This sequence entry has been released in GenBank with locus name AF049340. The version below has a bit more documentation. It contains a retroviral like sequence named MuERVC-C105 which we are preparing a manuscript about. MuERVC-C105 is the prototype for a new Murine Endogenous Retroviral-like sequence family which will be named MuERVC. 5/27/98 ________________________________________________________________________ LOCUS MUSC105 7954 bp DNA ROD 30-JAN-1998 DEFINITION Mus musculus genomic DNA containing endogenous retroviral-like element MuERVC-C105 interrupted by a LINE-1 insertion. ACCESSION AF049340 KEYWORDS . SOURCE western European house mouse. ORGANISM Mus musculus domesticus Eukaryotae; Metazoa; Chordata; Vertebrata; Eutheria; Rodentia; Sciurognathi; Muridae; Murinae; Mus. REFERENCE 1 (bases 6544 to 7055) AUTHORS Greene-Till,R., Zhao,Y. and Hardies,S.C. TITLE Analysis of the sequence flanking the Mus spretus-like LINE-1 repeat L1C105 shows that it entered C57BL/6J in the context of a spretus haplotype JOURNAL Unpublished REMARK Unique seq. used in allele typing REFERENCE 2 (bases 1 to 7954) AUTHORS Zhao,Y., Jacobs,C., Wang,L. and Hardies,S.C. TITLE Direct Submission JOURNAL Submitted (30-JAN-1998) Biochemistry, The University of Texas Health Science Center at San Antonio, 7703 Floyd Curl Dr., San Antonio, TX 78284, USA COMMENT MuERVC-C105 is the prototype of a new endogenous retroviral-like repeat family named MuERVC. The gag, pol, and env genes are disrupted by frameshifts and premature terminations. This entire region is thought to have introgressed from Mus spretus. The genetic locus is D4Sh1. FEATURES Location/Qualifiers source 1..7954 /organism="Mus musculus domesticus" /strain="C57BL/6J" /clone="lamda c105" /chromosome="4" gene join(1..179,998..2006) /note="5' end incomplete" /gene="gag" /pseudo misc_feature complement(1..1111) /note="Complement of MUSL1C105 which gives further annotation on the L1C105 insertion element." repeat_region join(1..179,998..6234) /note="MuERVC-C105" repeat_region join(180..194,998..1012) /note="the target site duplication for L1C105 insertion element" repeat_region 194..1000 /note="L1C105, bipartite inverted LINE-1" gene 1195..5475 /gene="pol" /pseudo LTR 5723..6234 repeat_region 6235..6543 /note="ancient LINE-1" misc_feature 6544..7055 /note="Unique sequence" repeat_region complement(7056..7954) /note="ancient LINE-1" BASE COUNT 2276 a 1919 c 1641 g 2118 t ORIGIN 1 gatctatcca gagatagaag aacctccaga atggtgttac accccacccc aatatcccca 61 actgatcccc tcccagatct ctcaacaggg tgctgctggt gatgcggaag agggaccagc 121 tgctggaaac caaagctgga gagctcagag cccagaggga ccagactcaa ccaccgagct 181 acctttacat actttttttt ttttttcctc ttttcttttt tttttttttt tttttttttt 241 tttttccatt ttttattagg tatttagctc atttacattt ccaatgctat accaaaagtc 301 ccccgtaccc acccaccccc actcccctac ccacccactc ccccttttcg gccctggcgt 361 tcccctgtac tggggcatat aaagtttgcg tgtccaatgg gcctctcttt ccagtgatgg 421 ccgactaggc catcttttga tacatatgca gctagagtca agagctcagg ggtactggtt 481 agttcataat gttgttccac ctatagggtt gaagatccct ttagctcctt gggtactttc 541 tctagctcct ccattgggag ccctgtgatc catccattag ctgactgtgg gcatccactt 601 ctgtgtttgc taggccccgg catagtctca caagagacag ctacatctgg gtcctttcag 661 taaaatcttg ctagtgtgtg caatggtgtc agcatttgga tgctgattat ggggtggatc 721 cctggatatg gtagtctcta tatggtccat cctttcatct cagctccaaa ctttgtttct 781 gtaactccct ccatgggtgt tttgttccca cttctaagga gggggcatag tgtccacact 841 tcagtcttca tttttcttga gtttcatgtg tttaggaaat tgtatcttat atcgtgggta 901 tcctaggttt tgggctaata tccacttatc agtgagtaca tattgtgtga gttccttgga 961 tggacctgga gagcatcatc ctgagtgagg taacacatac ctttacatac ttatggccct 1021 cctccagcag accccgggca attgcagccc cttcaatact gtcctttttc ctcatctgat 1081 ctctataatt agaagacaaa tcatgccgcc ttctctctcc tcaagcctta ctaatctaat 1141 agaatctctc atgttctctc atcaacctac ttgggatgac tgtcagcagc ttttacaggt 1201 tcttttcacc acaggggaga aggaaaagat ttggctggag gcaagaaaaa atgtgctagg 1261 ggctaataga ctactgacac aagttctgaa tgaaatagat gcaggattcc ctctgacatg 1321 tcctgactag gaccctaaca ggcctgaagg tagggagcag ttgacaattt tccgccgggc 1381 tctggtagca ggactgagag gagctggcag gtgccccacc agtttggcca aggtaagaga 1441 gatcctacaa gggttaaagg aacccctaac agtgtgttta gagcacccct tagaggcata 1501 caggcattac actccctttg accctatatc agagagccaa caggtgacag tagccatggc 1561 agtctgcttc tgacatgaca tcaggagaag gttacattgt ctagagggtc tgcaaccatt 1621 atctttgcaa gatctggtta aggaggcaga gaaagtgtac cataagagag agactgaaaa 1681 ataagaaaaa acgagaaaga gaaaagagag aggctgaggc aagagaaagc agatgagata 1741 gaaggcaaga aagaaattta actaagattt tagatacatt cacaggtgat aaggaagttt 1801 atagaaaagg tagaggaagt aggcagacag ggtacctggg caacacagga ctgagaagac 1861 ctcagaactc cagagaacct tcacaaccac ctctggataa ggaccaatgt gcatgctaca 1921 aagaaaaggg acactgggca agagactgcc ccagaaaaga gacagatacc agaccaccca 1981 aggtccttac cctagaagat gataactagg ggagatgggg ctcagacccc ctccccaagt 2041 ctagggtaac cctaactgtg gaggggaccc ccacggattt ccttgttgat accggagcag 2101 agttttcagt cctgaaagag ccactgggga aattgaggaa caagaaaact gtagtaatcg 2161 gcgctactgg tcagaaacaa tattcttgga ccactgatag gaaacttgat ttgggaagaa 2221 gccaagtagc tcattacttc ctcgtcattc ctgaatgtcc caccccattg ttagggagag 2281 acttactatc aaaattaaaa gcccaaataa acttctcttt ggaaggaact tcagtctctt 2341 gacaagtccc tatctctata attttagctt taaacttaga agaagaatat agattacatg 2401 agcctcaagc cccatcaaga aaagtactag aagggacctg gttagagaga tatcctcaag 2461 cttgggcaga gactggaggt atgagagagg caaagagggt gccctccatc attgtgatgc 2521 tgaaaactgg tgtgactcct atctggtatg acaatacccc atgaacaaag aggcccaaga 2581 gggcatcaga cctcacattc aaaggtgagg tctgatgttt tggtcattat cagtctccct 2641 ggaatactcc attgctacca gttaaaaagc caggcactaa tgattatcgg ccagtacaag 2701 acttaagaga agtaaacaaa agagtacaag atattcatcc tactgtccct aacccctaca 2761 tctactcagt tctctccccc ctgacagaca atggtatatg gtactggacc tgaaggacac 2821 tcttctgcct aaaactacat cccatgagtt gggtaatctt tgcttttgag tggagagacc 2881 cagattcggg acaggctgga caactaactt ggacacattt gcctcaagga ttcaagaact 2941 ctcctactct ctttgatgag gccctccact gggacttggc acagttcagt tcagaaaacc 3001 cccaaatttc tctccttcag tatgttgatg accggcttct tgctgccacc accaagcaag 3061 agtgcagact aggacctgag aaattactgg cagaattgag cgaattgaga tacaaggcac 3121 ccactaataa agtccagatt tgccagacag aagtaaccta cttgggttat actctcaggg 3181 gagggaaaca gtggctgaca gaagctcaga aaaagactgt gactcaaatc cccatcccaa 3241 caacctcgaa gcaggtgagg gaatttctgg gcatggctgg gttttgtagg ctctggatcc 3301 caagctttgc cactctggca gccccactct acccccttac taaagagact gcgactttct 3361 catggacccc catacaccaa gaggccttta aagagattaa aaaggccttg cttagtgcac 3421 cagcactagc ccttctggac ctgactaagc ctttcactct atatgtagac aaaagtgcag 3481 gaatagcgag agggttcctg acccaagctc tggggccata gaaacgacct gtggcctact 3541 tgtcataaaa ttagacccag tggccagtgg gtggccatct tgcttaaaag ctatcactgc 3601 tgtggcacta cttctcaaag atgctgacaa actgactcta ggtcaacgaa ctatagtagt 3661 agaccccatg ccatagaaag cattgttaga caaccacctg atcactggat gactaatgct 3721 cgcatgatcc attatcagag cctctttctg actgagagag tgcagtttac accccctgct 3781 gtcctaaatc ctgctacctt gctgccataa gtctacgact ccctaccagt acaccagtgt 3841 atggacatcc tggctgaaga aaccagaact aggaaagacc tcacaggcca gccatggcca 3901 ggctgcccca actggtacac agatagtagc agctttttgg ttgaaagaaa gtgaaaagca 3961 ggggcagcag tggtcaacgg aaaacaaact atctgggcca gcagcttgcc tgaagggacg 4021 acagcccaga gagcagagct aatcacactc acccaagcct tgcggctggc agaagagaac 4081 attaatatct acacagacag caggcatgct ttcgccaccg ctcatataca tggggcaaag 4141 ggggttattc acatctgctg ggaaagatat taaaagtaaa gaagaaatct tgagcctatt 4201 agaagtcata cacttgacaa aaacctggcc atcatacatt gccctggtca ccagaaaggc 4261 catggtgcca tagcaaaggg aaatcaggtg gctgacctgg ctgccacaca ggcagcccaa 4321 ggagctatga tcctcatagc tagagagaaa aataaagaac ttaaggatca ttatgaactc 4381 aaagccacag gctttgacta cactccagaa gatcaggaac taacaggcaa aatacctgag 4441 atatgtaggt atactcccca ggaagtggct aagacccaag atggttgctt ggtcctgccc 4501 accaaagaag gacaacaata tgtagccaat gtacaccagc tcatgcactt agaaactaag 4561 aatctcaaag aaattgttaa gaactcaaac tactatgtta taaaactgtt caacgttgcc 4621 caggagattg ttaataaatg ccaagcctgt gccctcacca atgccaggca ccacaagaac 4681 gtccccggaa ggtggctaag aggtgaccgg ccaggggcat actgaaaagt aaattttact 4741 gaagttaaac cagccaagta cggtaataaa tatctattag tttttataga cactttttga 4801 gggtgggaga ccgccaatgt tgtgacgaag atattagagg aaattttccc aagatttggc 4861 accctaaggt actttcatca gacaatggcc cctcttcgtt gcccaggtaa gtcaagcgtt 4921 agccagacaa ttggggattg attggaagtt acattgtgtt tatagaaccc agagttcaag 4981 acagttagag cggataaata gaacattaaa agaaacatta actaaattgg ctttagagac 5041 tggctgaaaa gattgggcag ctctcctttc cttccccttg ttctgagtac agaacacccc 5101 agggaaattt aaacttaaac cctttgaact cctccatggg ggaccccccc ccttaacaga 5161 agcaggggga atgtttgacc ctgatgttcc ttcttcccaa cccctgctag ctcgcttgaa 5221 ggccctagaa ctggtcaaaa aagatgcctg agaattgctg aaaaaaagta tgaaccaaga 5281 accaccgcag tgtcacgtaa atttcaaata agggatcctg tcctggtcta gcgccactgt 5341 tccagcaacc ttgaacccaa atggaaagga ccctacctgg tgcttctgac aagccctgct 5401 gctactccag catgctcccc ctcctggccc tgctgctgcc ccctgcccag ccctgctcac 5461 actcaccagg cactgcacag gaacctcctc cctccctcct accactaaca agagactctc 5521 tagtctcatt tgaggggctt ctgaggctct caatgttaca agacctaaag ttgcaacctc 5581 atgttggctt tgacagctgg gccagaggtt taattttcct agttctaaga ttagaactat 5641 gtactagaag gagtggggaa tgtgagaccc caacttagag cgtttctccc tagaaggtaa 5701 agccccggat gttccccaag cttgttttcc ctgatctcta aaaattcagc tagaaagaag 5761 ctctttgttc tctatagcca gcaaaaagcc tttttgtttc tatactttac aaccagagat 5821 acctgccttc ctgtgctgag gacatggaga taaaatttca gaaagaactc acttcccact 5881 cctgccttgt aaatttcacc aaagacaccc agaagagaag aactctcctt ctaactcctc 5941 ccaactcttc ccaactcctc ccaacttctc ccaactcttc ccaactcctc ccaactcttc 6001 ccaactctcc tcccaactcc tcccaattcc tcacctaact gttaaaatct gcctactgtc 6061 aacactcaca gttgaactcc cctggcatgc aaggtggagg gacttcatcc tcagctagct 6121 gataataaaa cctcttggag tttgcatcag gtgtgatttt ctctcgggac attggggtgt 6181 tgaccacctc atcccaggac ttgagtggag tcccagcatc aggggggtct tacaatactg 6241 cagagaaata gtgattaaaa actgcatgtt acaggtacac agacaaaaag gttgatctat 6301 ggaatagaat taaagaccca gaaataaaac cacacactta aggatgcttg atctttgaca 6361 aagaagccaa aaattatgca gtggtaaaaa gaaagcattc agagggtaga caggggttgg 6421 ggtggggtga taaattctag agtgtaaata aataaataaa taaataaata aataaataaa 6481 tacatctgta acattttcta tttcaaaatg tgtaaaaaaa taaaaaacct tattgaattc 6541 taatggatat acctgttgaa gcatcatcag cttcaatctg tgaagttatt tctaagctag 6601 tcatcatctt taaaaaatat gattttagaa ttatctttta aataaatcaa ggtagaagcc 6661 cattggaatt ctgaatatga atcaatagta tcaatagtat gatgtatcga catgtgtaca 6721 tactttagat tattttaatt ttccaaaaga aaacacataa actattgtat accattgttc 6781 taagatagca ttattaatta gaatctggac tcttaattca gaatactgca tctctatgca 6841 ttacctttct aattcctcaa atctttgtgg atttttctca tctggaacta taggtttcag 6901 attgaattct tgtgaagact gtttactctg attcaaagaa tattctaatc tttgttctat 6961 gacctctaat ttagcatctc gtctttcact cctctcctta tctgagcttg ttttattctg 7021 acctttatta cagaggatat acaaaattgt aaccgttacc aaacataatt aaatcttttt 7081 aaatgtattt atttatttat ttacttgttc gtctatttta cattccatat tttattccct 7141 accctgtcca ccctcctact gctccacatc ctataccgtg tcctcacccc cctctcttta 7201 tgtggatgtc cccactccct tgtcacctga cctctaaatg ccctggggcc tccagtctct 7261 tgagggttag gtgcatcatc tctgaatgaa cagaaaccag gaagtcctct gatgtatatg 7321 tgttggaggc ttcataccaa ttggtgtgtg ctgcctgttt ggtggtccag tgtttgagag 7381 atttcagagg tccaaattaa ctgagaatgc aggtcctcct acagggttac cctcctcctc 7441 agcttctttc agtctttcct aactcaacaa caggggtcag ctgctttgtt ccattggttg 7501 agtgcaacta tctgaccaac cctttcagct gcttgttgga tcttctggag ggcagccaat 7561 ataggtccct ttttgtgagt gctccatagc ctcagtaaca gtatcaggcc ttgggatcac 7621 cccttgagct tgatccctct ttgggcatgt tgctcaacct tcttttcctc aggctccttt 7681 ccatttccat ccttgtaatt ctttcataca ggaacaatta tgggtcagag ttgtgactgt 7741 gggatgcccc ttccctcttt taatgccctg tcttccagct agaggtaagc tctacaagtc 7801 ccctctccct aatgtccagc atgtcatcta aggcccctct ctttgagtcc tgagagtcgc 7861 tgacctccca ggtctctgag gaatcttaaa tggttgataa acacctaaag aaattattct 7921 tatgttaaca gtccaaacaa actgtgtggg atcc //