Dash is an alignment gap. ? or lower case letter is an incomplete codon resulting in a frameshift. * is a terminator.
SCH 6/3/98
GALV_env MVLLPGS (extra N-terminal peptide on GALV env)
1 50
MoMLV_env MARSTLSKPL KNKVNP--RG PLIPLILLML RGVSTASPGS SPHQVYNITW
GALV_env MLLTSNLHHL RHQMSPGSWK RLIILLSCVF GGGGTSLQNK NPHQPMTLTW
MuRVY_env MKTTSEKI-- ------GQWP LLIILKLCL- --RCTPTLGN NPHTLMTLTG
MuERVC_env ---------- ---------- ---------- ---------- ----------
MuRRS_env ---------- ---------- ---------- ---------- ----------
51 100
MoMLV_env EVTNGDRETV WATSGNHPLW TWWPDLTPDL CMLAHHGPSY WGLEYQSPFS
GALV_env QVLSQTGDVV WDTKAVQPPW TWWPTLKPDV CALA-ASLES WDIPGTDVSS
MuRVY_env RTISQAGDTL WSTS?APPLY TWCPPLFPEI CALI-DGLDA WDIPEESHET
MuERVC_env ---------- ---------- ---------- ---------- ----------
MuRRS_env ---------- ---------- ---------- ---------- ----------
101 150
MoMLV_env SPPG-PPCCS GGSSPGCSRD CEEPLTSLTP RCNTAWNRLK LDQTTHKSNE
GALV_env SKRV-RPPDS DYTA------ AYKQITWGAI GCSYPRARTR M------ASS
MuRVY_env VPQDEVIYHK QAISPGVK?- SQGKYIADIP GCSSRSQQRR LCQ------E
MuERVC_env ---------- ---------- ---------- ---------- ----------
MuRRS_env ---------- ---------- ---------- ---------- ----------
151 200
MoMLV_env GFYVCP---G PHRPRESKSC GGPDSFYCAY WGCETTGRAY WKPSSSWDFI
GALV_env TFYVCPRD-G RTLSEARR-C GGLESLYCKE WDCETTGTGY WLSKSSKDLI
MuRVY_env PFYVCPRN?G QIKKRSRW-C GGIEGIFCSQ WRCETTGTTH WDPSS-----
MuERVC_env ---------- ---------- ---------- ---------- ----------
MuRRS_env ---------- ---------- ---------- ---------- ----------
201 250
MoMLV_env TVNNNLTSDQ AVQVCKDNK- -WCNPLVIRF TDAGRRVT-S WTTGHYWGLR
GALV_env TVKWDQNSEW TQKFQQCHQT GWCNPLKIDF TDKGKLSK-D WITGKTWGLR
MuRVY_env -------SLI LLZYPDEIR- -AIDSLNITF TQKAKETK?D WIRGRLWGLT
MuERVC_env ---------- ---------- ---------- ---------- ----------
MuRRS_env ---------- ---------- ---------- ---------- ----------
251 300
MoMLV_env LYVSGQDPGL TFGIRLRYQN LGPRVPIGPN PVLADQQPLS K------PKP
GALV_env FYVSG-HPGV QFTIRLKITN M-PAVAVGPD LVLVEQGPPR TSLALPPPLP
MuRVY_env FYVTGTGPGF TFKIRLKMKC P-PTQAVGPT PVLVK?---- ------PPMP
MuERVC_env ---------- ---------- ---------- ------?ALL LLQHAPPPGP
MuRRS_env ---------- ---------- ---------- ---------- ----------
301 350
MoMLV_env VKSPSVTKPP SGTPLSPTQL ---------- -----PPAGT ENRLLNLVDG
GALV_env PREAPPPSLP DSNSTALATS AQTPTVRKTI VTLNTPPPTT GDRLFDLVQG
MuRVY_env LPRPTFPGPT LVVPAIPTEV YTPCSDLKLT LPs--TPPDT ENRLFSLVQG
MuERVC_env AAAPCPALLT LTRHCTGTSS ---------- -----LPPTT NKRLSSLI*G
MuRRS_env ---------- ---------- ---------- ---------- ----------
351 400
MoMLV_env AYQALNLTSP -DKTQECWLC LVAGPPYYEG VAVLGTYSNH TSAPANCSVA
GALV_env AFLTLNATNP -GATESCWLC LAMGPPYYEA IASSGEVAYS T-DLDRCRWG
MuRVY_env AFWYAIVANP ?TVTKSCWLC YASNPSYYEG VAQVKTN-NK AEDNSQCPWG
MuERVC_env ASEALNVTRP -KVATSCWL* ---------- ---------- ----------
MuRRS_env ---------- ---------- ---------- ---------- ----------
401 450
MoMLV_env SQHKLTLSEV TGQGLCIGAV PKTHQALCNT TQTSSR---G SYYLVAPTGT
GALV_env TQGKLTLTEV SGHGLCIGKV PFTHQHLCNQ TLSINSS-GD HQYLLPSNHS
MuRVY_env ENRKLTLAAV SGNGLCLEQV PHDKWZLCNQ THHLQSSNNR GQYLVPPLVT
MuERVC_env ---------- ---------- ---------- ---------- ----------
MuRRS_env ---------- ---------- ---------- ---------- ----------
451 500
MoMLV_env MWACSTGLTP CISTTILNLT TDYCVLVELW PRVTYHSPSY VYGLFERSN-
GALV_env WWACSTGLTP CLSTSVFNQT RDFCIQVQLI PRIYYYPEEV LLQAYDNSHP
MuRVY_env VWACNTGLTP CVFTSVFNTS KDYCRLVQSV PRLLYHDDSF L?QWINHWT-
MuERVC_env ---------- ---------- ---------- ---------- ----------
MuRRS_env ---------- ---------- ---------- ---------- ----------
501 550
MoMLV_env RHKREPVSLT LALLLGGLTM GGIAAGIGTG TTALMATQQ- FQQLQA-AVQ
GALV_env RTKREAVSLT LAVLLGLGIT AGIGTGSTAL IKGPIDLQQG LTSLQI-AID
MuRVY_env RYKREPITMT LAVLLG---- LGTAAGVGKG TTALIQTPHY FHELHN?AMD
MuERVC_env ---------- ---------- ---------- ---------- ----------
MuRRS_env ---------- ---------- ---------- ---------- ----------
551 600
MoMLV_env DDLREVEKSI SNLEKSLTSL SEVVLQNRRG LDLLFLKEGG LCAALKEECC
GALV_env ADLRALQDSV SKLEDSLTSL SEVVLQNRRG LDLLFLKEGG LCAALKEECC
MuRVY_env ADLGALEQSI TGLEESLTSL -----QNRRG LDLLFL?EGG LCAALKEECC
MuERVC_env ---------- ---------- ---------- ---------- ----------
MuRRS_env ---------- ---------- ---------- ---------- ----------
601 650
MoMLV_env FYADHTGLVR DSMAKLRERL NQRQKLFEST QGWFEGLFNR SPWFTTLIST
GALV_env FYIDHSGAVR DSMKKLKEKL DKRQLERQKS QNWYEGWFNN SPWFTTLLST
MuRVY_env FYVDHSGLIR DSMAKLRERL EKZSKEREAY *GWYENWFNR SPCFTTLI?T
MuERVC_env ---------- ---------- ---------- ---------- ----------
MuRRS_env ---------- ---------- ---------- ----ELLKNK PPWLTTLIST
651 700
MoMLV_env IMGPLIVLLM ILLFGPCILN RLVQFVKDRI SVVQALVLTQ QYHQLKP--I
GALV_env IAGPLLLLLL LLILGPCIIN KLVQFINDRI SAC*------ ----------
MuRVY_env LAGPLI?FFL LLSFGPCILN KLVAFVK--I NTI*------ ----------
MuERVC_env ---------- ---------- ---------- ---------- ----------
MuRRS_env LIDPLIILLL LLTCGPLILN NLMTFDRERI GTVQLLVLRQ QYQSLQNLKK
701 705
MoMLV_env EYEP*
GALV_env -----
MuRVY_env -----
MuERVC_env -----
MuRRS_env EVAV*