#NEXUS [Sequences in the Ms475 and Ms7024 families. SAF is closer to the domesticus/spretus split. Both arms of PL3 included. 1/9/99] Begin data; Dimensions ntax=29 nchar=1280; Format datatype=DNA interleave gap=- matchchar=.; Matrix [ 6100 ' ' ' ' ] L1MdA2 ACTGAACAAA GAATTCTCAC CCGAGGAATA CCGAATGGCA GAGAAGCACT TFnode2 .......... .......... .t........ .......... .........c Saf ---------- --........ .t........ .......... .........c Ks105 ---------- ---------- ---------- ---------- ---------- Sk11 ---------- ---------- ---------- ---------- ---------- Sk13 ---------- ---------- ---------- ---------- ---------- Sk5 ---------- ---------- ---------- ---------- ---------- Sk1 ---------- ---------- ---------- ---------- ---------- Ks101 ---------- ---------- ---------- ---------- ---------- Ks106 ---------- ---------- ---------- ---------- ---------- Sk9 ---------- ---------- ---------- ---------- ---------- S22 ---------- ---------- ---------- ---------- ---------- Sk2 ---------- ---------- ---------- ---------- ---------- Sk6 ---------- ---------- ---------- ---------- ---------- Sk23 ---------- ---------- ---------- ---------- ---------- El111 ---------- ---------- ---------- ---------- ---------- PL3uf ---------- ---------- ---------- ---------- ---------- Sk31 ---------- ---------- ---------- ---------- ---------- Sk7 ---------- ---------- ---------- ---------- ---------- Sk3 ---------- ---------- ---------- ---------- ---------- Sc7 ---------- ---------- ---------- ---------- ---------- C105 ---------- ---------- ---------- ---------- ---------- Sc3 ---------- ---------- ---------- ---------- ---------- Sc4 ---------- ---------- ---------- ---------- ---------- Sk30 ---------- ---------- ---------- ---------- ---------- Sk4 ---------- ---------- ---------- ---------- ---------- Sk29 ---------- ---------- ---------- ---------- ---------- Sk20 ---------- ---------- ---------- ---------- ---------- PL2 ---------- .......... .t........ .......... .........c [ 6150 ' ' ' ' ] L1MdA2 TGAAAAAATG TTCAACATCC TTAATCATCA GGGAAATGCA AATCAAAACA TFnode2 .......... .......... .......... .......... .......... Saf .......... .......... .......... .......... .......... Ks105 ---------- ---------- ---------- ---------- ---------- Sk11 ---------- ---------- ---------- ---------- ---------- Sk13 ---------- ---------- ---------- ---------- ---------- Sk5 ---------- ---------- ---------- ---------- ---------- Sk1 ---------- ---------- ---------- ---------- ---------- Ks101 ---------- ---------- ---------- ---------- ---------- Ks106 ---------- ---------- ---------- ---------- ---------- Sk9 ---------- ---------- ---------- ---------- ---------- S22 ---------- ---------- ---------- ---------- ---------- Sk2 ---------- ---------- ---------- ---------- ---------- Sk6 ---------- ---------- ---------- ---------- ---------- Sk23 ---------- ---------- ---------- ---------- ---------- El111 ---------- ---------- ----...... .......... .......... PL3uf ---------- ---------- ---------- ---------- ---------- Sk31 ---------- ---------- ---------- ---------- ---------- Sk7 ---------- ---------- ---------- ---------- ---------- Sk3 ---------- ---------- ---------- ---------- ---------- Sc7 ---------- ---------- ---------- ---------- ---------- C105 ---------- ---------- ---------- ---------- ---------- Sc3 ---------- ---------- ---------- ---------- ---------- Sc4 ---------- ---------- ---------- ---------- ---------- Sk30 ---------- ---------- ---------- ---------- ---------- Sk4 ---------- ---------- ---------- ---------- ---------- Sk29 ---------- ---------- ---------- ---------- ---------- Sk20 ---------- ---------- ---------- ---------- ---------- PL2 .......... .........t .......... .......... .......... [ 6200 ' ' ' ' ] L1MdA2 ACCCTGAGAT TCCACCTCAC ACCAGTCAGA ATGGCTAAGA TCAAAAATTC TFnode2 .......... .......... ......g... .......... .......... Saf .......... .......... ......g.a. .......... .......... Ks105 ---------- ---------- ---------- ---------- ---------- Sk11 ---------- ---------- ---------- ---------- ---------- Sk13 ---------- ---------- ---------- ---------- ---------- Sk5 ---------- ---------- ---------- ---------- ---------- Sk1 ---------- ---------- ---------- ---------- ---------- Ks101 ---------- ---------- ---------- ---------- ---------- Ks106 ---------- ---------- ---------- ---------- ---------- Sk9 ---------- ---------- ---------- ---------- ---------- S22 ---------- ---------- ---------- ---------- ---------- Sk2 ---------- ---------- ---------- ---------- ---------- Sk6 ---------- ---------- ---------- ---------- ---------- Sk23 ---------- ---------- ---------- ---------- ---------- El111 .......... .......... ......g... .......... .......... PL3uf ---------- ---------- ---------- ---------- ---------- Sk31 ---------- ---------- ---------- ---------- ---------- Sk7 ---------- ---------- ---------- ---------- ---------- Sk3 ---------- ---------- ---------- ---------- ---------- Sc7 ---------- ---------- ---------- ---------- ---------- C105 ---------- ---------- ---------- ---------- ---------- Sc3 ---------- ---------- ---------- ---------- ---------- Sc4 ---------- ---------- ---------- ---------- ---------- Sk30 ---------- ---------- ---------- ---------- ---------- Sk4 ---------- ---------- ---------- ---------- ---------- Sk29 ---------- ---------- ---------- ---------- ---------- Sk20 ---------- ---------- ---------- ---------- ---------- PL2 .......... .......... t.....g... .......... .......... [ 6250 ' ' ' ' ] L1MdA2 AGGTGACAGC AGATGCTGGC GAGGATGTGG AGAAAGAGGA ACACTCCTCC TFnode2 .......... .......... .......... .......... .......... Saf .......... .......... .t........ .......... .......... Ks105 ---------- ---------- ---------- ---------- ---------- Sk11 ---------- ---------- ---------- ---------- ---------- Sk13 ---------- ---------- ---------- ---------- ---------- Sk5 ---------- ---------- ---------- ---------- ---------- Sk1 ---------- ---------- ---------- ---------- ---------- Ks101 ---------- ---------- ---------- ---------- ---------- Ks106 ---------- ---------- ---------- ---------- ---------- Sk9 ---------- ---------- ---------- ---------- ---------- S22 ---------- ---------- ---------- ---------- ---------- Sk2 ---------- ---------- ---------- ---------- ---------- Sk6 ---------- ---------- ---------- ---------- ---------- Sk23 ---------- ---------- ---------- ---------- ---------- El111 .......... .......... .t........ .......... .......... PL3uf ---------- ---------- ---------- ---------- ---------- Sk31 ---------- ---------- ---------- ---------- ---------- Sk7 ---------- ---------- ---------- ---------- ---------- Sk3 ---------- ---------- ---------- ---------- ---------- Sc7 ---------- ---------- ---------- ---------- ---------- C105 ---------- ---------- ---------- ---------- ---------- Sc3 ---------- ---------- ---------- ---------- ---------- Sc4 ---------- ---------- ---------- ---------- ---------- Sk30 ---------- ---------- ---------- ---------- ---------- Sk4 ---------- ---------- ---------- ---------- ---------- Sk29 ---------- ---------- ---------- ---------- ---------- Sk20 ---------- ---------- ---------- ---------- ---------- PL2 .......... .......... .t........ .......... g......... [ 6300 ' ' ' ' ] L1MdA2 ATTGTTGGTG GGAGTGCAGG CTTGTACAAC CACTCTGGAA ATCAGTCTGG TFnode2 .......... ...t...... .......... .......... .......... Saf .......... ...t...... .......... .......... .......... Ks105 ---------- ---------- ---------- ---------- ---------- Sk11 ---------- ---------- ---------- ---------- ---------- Sk13 ---------- ---------- ---------- ---------- ---------- Sk5 ---------- ---------- ---------- ---------- ---------- Sk1 ---------- ---------- ---------- ---------- ---------- Ks101 ---------- ---------- ---------- ---------- ---------- Ks106 ---------- ---------- ---------- ---------- ---------- Sk9 ---------- ---------- ---------- ---------- ---------- S22 ---------- ---------- ---------- ---------- ---------- Sk2 ---------- ---------- ---------- ---------- ---------- Sk6 ---------- ---------- ---------- ---------- ---------- Sk23 ---------- ---------- ---------- ---------- ---------- El111 .......... ...t...... ...------- .......... .......... PL3uf ---------- ---------- ---------- ---------- ---------- Sk31 ---------- ---------- ---------- ---------- ---------- Sk7 ---------- ---------- ---------- ---------- ---------- Sk3 ---------- ---------- ---------- ---------- ---------- Sc7 ---------- ---------- ---------- ---------- ---------- C105 ---------- ---------- ---------- ---------- ---------- Sc3 ---------- ---------- ---------- ---------- ---------- Sc4 ---------- ---------- ---------- ---------- ---------- Sk30 ---------- ---------- ---------- ---------- ---------- Sk4 ---------- ---------- ---------- ---------- ---------- Sk29 ---------- ---------- ---------- ---------- ---------- Sk20 ---------- ---------- ---------- ---------- ---------- PL2 .......... ...t...... .......... .......... .......... [ 6350 ' ' ' ' ] L1MdA2 CGGTTCCTCA GAAAACTGGA CATAGTACTA CCGGAGGATC CAGCAATACC TFnode2 .......... .....t.... .......... .......... .......... Saf t......... .....t.... .......... .......... .......... Ks105 ---------- ---------- ---------- ---------- ---------- Sk11 ---------- ---------- ---------- ---------- ---------- Sk13 ---------- ---------- ---------- ---------- ---------- Sk5 ---------- ---------- ---------- ---------- ---------- Sk1 ---------- ---------- ---------- ---------- ---------- Ks101 ---------- ---------- ---------- ---------- ---------- Ks106 ---------- ---------- ---------- ---------- ---------- Sk9 ---------- ---------- ---------- ---------- ---------- S22 ---------- ---------- ---------- -----..... .......... Sk2 ---------- ---------- ---------- ---------- ---------- Sk6 ---------- ---------- ---------- ---------- ---------- Sk23 ---------- ---------- ---------- ---------- ---------- El111 .......... .....t.... .......... .......... .......... PL3uf ---------- ---------- ---------- ---------- ---------- Sk31 ---------- ---------- ---------- ---------- ---------- Sk7 ---------- ---------- ---------- ---------- ---------- Sk3 ---------- ---------- ---------- ---------- ---------- Sc7 ---------- ---------- ---------- ---------- ---------- C105 ---------- ---------- ---------- ---------- ---------- Sc3 ---------- ---------- ---------- ---------- ---------- Sc4 ---------- ---------- ---------- ---------- ---------- Sk30 ---------- ---------- ---------- ---------- ---------- Sk4 ---------- ---------- ---------- ---------- ---------- Sk29 ---------- ---------- ---------- ---------- ---------- Sk20 ---------- ---------- ---------- ---------- ---------- PL2 .......... .....t.... .......... .......... .......... [ 6400 ' ' ' ' ] L1MdA2 TCTCCTGGGC ATATATCCAG AAGATGCCCC AACAGGTAAG AAGGACACAT TFnode2 .......... .......... ....a..... ...t...... .......... Saf .......... .......... ....a..... ...t...... .......... Ks105 ---------- ---------- ---------- ---------- ---------- Sk11 ---------- ---------- ---------- ---------- ---------- Sk13 ---------- ---------- ---------- ---------- ---------- Sk5 ---------- ---------- ---------- ---------- ---------- Sk1 ---------- ---------- ---------- ---------- ---------- Ks101 ---------- ---------- ---------- ---------- ---------- Ks106 ---------- ---------- ---------- ---------- ---------- Sk9 ---------- ---------- ---------- ---------- ---------- S22 .......... .......... ....a..... ...t...... .......... Sk2 ---------- ---------- ---------- ---------- ---------- Sk6 ---------- ---------- ---------- ---------- ---------- Sk23 ---------- ---------- ---------- ---------- ---------- El111 .......... .......... ....a..... ...t...... .......... PL3uf ---------- ---------- ---------- ---------- ---------- Sk31 ---------- ---------- ---------- ---------- ---------- Sk7 ---------- ---------- ---------- ---------- ---------- Sk3 ---------- ---------- ---------- ---------- ---------- Sc7 ---------- ---------- ---------- ---------- ---------- C105 ---------- ---------- ---------- ---------- ---------- Sc3 ---------- ---------- ---------- ---------- ---------- Sc4 ---------- ---------- ---------- ---------- ---------- Sk30 ---------- ---------- ---------- ---------- ---------- Sk4 ---------- ---------- ---------- ---------- ---------- Sk29 ---------- ---------- ---------- ---------- ---------- Sk20 ---------- ---------- ---------- ---------- ---------- PL2 .......... .......... ....a..... ...t...... .......... [ 6450 ' ' ' ' ] L1MdA2 GCTCCACTAT GTTCATAGCA GCCTTATTTA TAATAGCCAG AAGCTGGAAA TFnode2 .......... .......... .......... .......... ..a....... Saf .......... .......... .......... .......... ..a....... Ks105 ---------- ---------- ---------- ---------- ---------- Sk11 ---------- ---------- ---------- ---------- ---------- Sk13 ---------- ---------- ---------- ---------- ---------- Sk5 ---------- ---------- ---------- ---------- ---------- Sk1 ---------- ---------- ---------- ---------- ---------- Ks101 ---------- ---------- ---------- ---------- ---------- Ks106 ---------- ---------- ---------- ---------- ---------- Sk9 ---------- ---------- ---------- ---------- ---------- S22 .......... .......... .......... .......... ..a....... Sk2 ---------- ---------- ---------- ---------- ---------- Sk6 ---------- ---------- ---------- ---------- ---------- Sk23 ---------- ---------- ---------- ---------- ---------- El111 .......... .......... .......... .......... ..a....... PL3uf ---------- ---------- ---------- ---------- ---------- Sk31 ---------- ---------- ---------- ---------- ---------- Sk7 ---------- ---------- ---------- ---------- ---------- Sk3 ---------- ---------- ---------- ---------- ---------- Sc7 ---------- ---------- ---------- ---------- ---------- C105 ---------- ---------- ---------- ---------- ---------- Sc3 ---------- ---------- ---------- ---------- ---------- Sc4 ---------- ---------- ---------- ---------- ---------- Sk30 ---------- ---------- ---------- ---------- ---------- Sk4 ---------- ---------- ---------- ---------- ---------- Sk29 ---------- ---------- ---------- ---------- ---------- Sk20 ---------- ---------- ---------- ---------- ---------- PL2 .......... .......... .......... .......... ..a....... [ 6500 ' ' ' ' ] L1MdA2 GAACCTAGAT GCCCCTCAAC AGAGGAATGG ATACAGAAAA TGTGGTACAT TFnode2 .....c.... .......... .......... .......... .......... Saf .....c.... .......... .......... .......... .......... Ks105 ---------- ---------- ---------- ---------- ---------- Sk11 ---------- ---------- ---------- ---------- ---------- Sk13 ---------- ---------- ---------- ---------- ---------- Sk5 ---------- ---------- ---------- ---------- ---------- Sk1 ---------- ---------- ---------- ---------- ---------- Ks101 ---------- ---------- ---------- ---------- ---------- Ks106 ---------- ---------- ---------- ---------- ---------- Sk9 ---------- ---------- ---------- ---------- ---------- S22 .....c.... .......... .......... .......... .......... Sk2 ---------- ---------- ---------- ---------- ---------- Sk6 ---------- ---------- ---------- ---------- ---------- Sk23 ---------- ---------- ---------- ---------- ---------- El111 .....c.... .......... .......... .......... .......... PL3uf ---------- ---------- ---------- ---------- ---------- Sk31 ---------- ---------- ---------- ---------- ---------- Sk7 ---------- ---------- ---------- ---------- ---------- Sk3 ---------- ---------- ---------- ---------- ---------- Sc7 ---------- ---------- ---------- ---------- ---------- C105 ---------- ---------- ---------- ---------- ---------- Sc3 ---------- ---------- ---------- ---------- ---------- Sc4 ---------- ---------- ---------- ---------- ---------- Sk30 ---------- ---------- ---------- ---------- ---------- Sk4 ---------- ---------- ---------- ---------- ---------- Sk29 ---------- ---------- ---------- ---------- ---------- Sk20 ---------- ---------- ---------- ---------- ---------- PL2 .....c.... .......... .......... .......... .......... [ 6550 ' ' ' ' ] L1MdA2 CTACACAATG GAGTACTACT CAGCTATTAA AAAGAATGAA TTTATGAAAT TFnode2 .......... .......... .......... .......... .......... Saf .......... .......... .......... .......... .........c Ks105 ---------- ---------- ---------- ---------- ---------- Sk11 ---------- ---------- ---------- ---------- ---------- Sk13 ---------- ---------- ---------- ---------- ---------- Sk5 ---------- ---------- ---------- ---------- ---------- Sk1 ---------- ---------- ---------- ---------- ---------- Ks101 ---------- ---------- ---------- ---------- ---------- Ks106 ---------- ---------- ---------- ---------- ---------- Sk9 ---------- ---------- ---------- ---------- ---------- S22 .......... .......... .......... .......... .......... Sk2 ---------- ---------- ---------- ---------- ---------- Sk6 ---------- ---------- ---------- ---------- ---------- Sk23 ---------- ---------- ---------- ---------- ---------- El111 .......... .......... .......... .......... .......... PL3uf ---------- ---------- ---------- ---------- ---------- Sk31 ---------- ---------- ---------- ---------- ---------- Sk7 ---------- ---------- ---------- ---------- ---------- Sk3 ---------- ---------- ---------- ---------- ---------- Sc7 ---------- ---------- ---------- ---------- ---------- C105 ---------- ---------- ---------- ---------- ---------- Sc3 ---------- ---------- ---------- ---------- ---------- Sc4 ---------- ---------- ---------- ---------- ---------- Sk30 ---------- ---------- ---------- ---------- ---------- Sk4 ---------- ---------- ---------- ---------- ---------- Sk29 ---------- ---------- ---------- ---------- ---------- Sk20 ---------- ---------- ---------- ---------- ---------- PL2 .......... .......... .......... .......... .......... [ 6600 ' ' ' ' ] L1MdA2 TCCTAGCCAA ATGGATGGAC CTGGAGGGCA TCATCCTGAG TGAGGTAACA TFnode2 .......... .......... ......a... .......... .......... Saf .......... .......... .......... .......... .......... Ks105 ---------- ---------- -.....a... .......... .......... Sk11 ---------- ---------- -.....a... .......... .......... Sk13 ---------- ---------- -.....a... .......... .......... Sk5 ---------- ---------- -.....a... .......... .......... Sk1 ---------- ---------- -.....a... .......... .......... Ks101 ---------- ---------- -.....a... .......... .......... Ks106 ---------- ---------- -.....a... .......... .......... Sk9 ---------- ---------- -.....a... .......... .......... S22 .......... .......... ......a... .......... .......... Sk2 ---------- ---------- -.....a... .......... .......... Sk6 ---------- ---------- -.....a... .......... .......... Sk23 ---------- ---------- -.....a... .......... .......... El111 .......... .......... ......a... .......... .......... PL3uf ---------- ---------- ---------- ---....... .......... Sk31 ---------- ---------- -.....a... .......... .......... Sk7 ---------- ---------- -.....a... .......... .......... Sk3 ---------- ---------- -.....a... .......... .......... Sc7 ---------- ---------- ---------- ---------- ---------- C105 ---------- -......... ......a... .......... .......... Sc3 ---------- ---------- ---------- ---------- ---------- Sc4 ---------- ---------- ---------- ---------- ---------- Sk30 ---------- ---------- ---------- ---------- ---------- Sk4 ---------- ---------- -.....a... .......... .......... Sk29 ---------- ---------- -.....a... .......... .......... Sk20 ---------- ---------- -.....a... .......... .......... PL2 .......... .......... ......a... .......... .......... [ 6650 ' ' ' ' ] L1MdA2 CATTCACAAA GAAACTCACA CAATATGTAT TCACTGATAA GTGGATATTA TFnode2 ..a....... .g........ .........c .......... .......c.. Saf .......... .g........ .........c .......... .......... Ks105 .......... .g........ .........c .......... .......... Sk11 .......... .g........ .........c .......... .......... Sk13 .......... .g...a.... .........c .......... .......... Sk5 .......... .g........ .........c .......... .......... Sk1 .......... .g........ .........c .......... .......... Ks101 .......... .g........ .........c .......... .......... Ks106 .......... .g........ .........c .......... .......... Sk9 .......... .g........ .........c .......... .......... S22 .......... .g........ .........c .......... .......... Sk2 .......... .g........ .........c .......... .......... Sk6 .......... .g........ .........c .......... .......... Sk23 .......... .g........ .........c .......... .......... El111 .......... .g..t..... .........c .......... .......... PL3uf .......... .g........ .........c .......... .......... Sk31 .......... .g........ .........c .......... ....c..... Sk7 .......... .......... .........c .......... .......... Sk3 .......... .g........ .........c .......... .......... Sc7 ---------- ---------- ---------- ---------- ---------- C105 ...------. .g........ .........c .......... .......... Sc3 ---------- ---------- ---------- ---------- ---------- Sc4 ---------- ---------- ---------- ---------- ---------- Sk30 -------... .g........ .........c .......... .......... Sk4 .......... .g........ .........c .......... .......... Sk29 .......... .g........ .........c .......... .......... Sk20 .......... .g........ .........c .......... .......... PL2 .......... .g........ .........c .......... .......... [ 6700 ' ' ' ' ] L1MdA2 GCCCCAAACC TAGGATACCC AAGATATAAG ATATAATTTG CTAAACACAT TFnode2 ....a..... .......... .c........ ...c.....c .......... Saf ....a..... .......... .c........ ...c.....c .......... Ks105 ....a..... .......... .c........ ...c.....c .......... Sk11 ....a..... .......... .c........ ...c.....c .......... Sk13 ....a..... .......... .c........ ...c.....c .......... Sk5 ....a..... .......... .c........ ...c.....c .......... Sk1 ....a..... .......... .c........ ...c.....c .......... Ks101 ....a..... .......... .c........ ...c.....c .......... Ks106 ....a..... .......... .c........ ...c.....c .......... Sk9 ....a..... .......... .c........ ...c.....c .......... S22 ....a..... .......... .c........ ...c.....c .......... Sk2 ....a..... .......... .c........ ...c.....c .......... Sk6 ....a..... .......... .c........ ...c.....c .......... Sk23 ....a..... .......... .c........ ...c.....c .......... El111 ....a..... .......... .c........ ...c.....c .......... PL3uf ....a..... .......... .c........ ...c.....c .......... Sk31 ....a..... .......... .c........ ...c..a..c .......... Sk7 ....a..... .......... .c........ ...c.....c .......... Sk3 ....a..... .......... .c........ ...c.....c .......... Sc7 ---------- ---------- ---------- ---------- ---------- C105 ....a..... .......... .c........ ...c.....c .......... Sc3 ---------- ---------- ---------- ---------- ---------- Sc4 ---------- ---------- ---------- ---------- ---------- Sk30 ....a..... .......... .c........ ...c.....c .......... Sk4 ....a..... .......... .c........ ...c.....c .......... Sk29 ....a..... .......... .c........ ...c.....c .......... Sk20 ....a..... .......... .c........ ...c.....c .......... PL2 ....a..... .......... .c........ ...c.....c .......... [ 6750 ' ' ' ' ] L1MdA2 GAAACTCAAG GAGAATGAAG ACTGAAGTGT GGACACTATG -CCCCTCCTT TFnode2 .......... a.a....... .......... .......... -......... Saf .......... a.a....... .......... .......... -......... Ks105 .......... a.a....... .......... .......... c......... Sk11 .......... a.a....... .......... .......... c......... Sk13 .......... a.a....... .......... .......... c......... Sk5 .......... a.a....... .......... .......... c......... Sk1 .......... a.a....... .......... .......... c......... Ks101 .....c.... a.a....... .......... .......... c......... Ks106 .....c.... a.a....... .......... .......... c......... Sk9 .....c.... a.a....... .......... .......... c......... S22 .....c.... a.a....... .......... .......... c......... Sk2 .....c.... a.a....... .......... .......... c......... Sk6 .....c.... a.a....... .......... .......... c......... Sk23 .....c.... a.a....... .......... .......... c......... El111 .....c.... a.a....... .......... .......... c......... PL3uf .....c.... a.a....... .......... .......... c......... Sk31 .......... a.a....... .......... .......... c......... Sk7 .......... a.a....... .......... .......... c......... Sk3 .......... a.a....... .......... .......... c......... Sc7 ---------- ---------- ---------- ---------- ---------- C105 .......... a.a....... .......... .......... c......... Sc3 ---------- ---------- ---------- ---------- ---------- Sc4 ---------- ---------- ---------- ---------- ---------- Sk30 .......... a.a....... .......... .......... c......... Sk4 .......... a.a....... .......... .......... c......... Sk29 .......... a.a....... .......... .......... c......... Sk20 .......... a.a....... .......... .......... c......... PL2 .......... a.a....... .......... .......... c......... [ 6800 ' ' ' ' ] L1MdA2 AGATTTGGG- AACAAAACAC CCATGGAAGG AGTTACAGAG ACGGAGTTTG TFnode2 ...ag....- .......... .......... .........a ..aa...... Saf ...ag....- .......... .......... .........a ..aa...... Ks105 ...ag....- .......... .......... .........a ..aa...... Sk11 ...ag....- .......... .......... .........a ..aa...... Sk13 ...ag....- .......... .......... .........a ..aa...... Sk5 ...ag....- .......... .......... .........a ..aa...... Sk1 ...ag....- .......... .......... .........a ..aa...... Ks101 ...ag....- ..a....... .......... .........a ..aa...... Ks106 ...ag....- ..a....... .......... .........a ..aa...... Sk9 ...ag....- ..a....... .......... .........a ..aa...... S22 ...ag....- ..a....... .......... .........a ..aa...... Sk2 ...ag....- ..a....... .......... .........a ..aa...... Sk6 ...ag....- ..a....... .......... .........a ..aa...... Sk23 ...ag....- ..a....... .......... .........a ..aa...... El111 ...ag....a ..a....... .......... .........a ..aa...... PL3uf ...ag....- ..a....... .......... .........a ..aa...... Sk31 ...ag....- .......... .......g.. .........a ..aa...... Sk7 ...ag....- .......... .......g.. .........a ..aa...... Sk3 ...ac....- .......... .......g.. .........a ..aa...... Sc7 ---------- ---------- ---------- ---------- ---------- C105 ...ag....- .......... .......g.. .........a ..aa...... Sc3 ---------- ---------- ---------- ---------- ---------- Sc4 ---------- ---------- ---------- ---------- ---------- Sk30 ...ag....- .......... .......g.. .........a ..aa...... Sk4 ...ag....- .......... .......g.. .........a ..aa...... Sk29 ...ag....- .......... .......g.. .........a ..aa...... Sk20 ...ag....- .......... .......g.. .........a ..aa...... PL2 ...ag.a..- .......... .......g.. .........a ..aa...... [ 6850 ' ' ' ' ] L1MdA2 GAGCTGAGAT GAAAGGATGG ACCATGTAGA GACTGCCATA GCCAGGGATC TFnode2 .......... .......... .......... .......... t......... Saf .......... .......... .......... .......... t......... Ks105 .......... .......... .....a.... .......... t......... Sk11 .......... .......... .....a.... .......... t......... Sk13 .......... .......... .....a.... .......... t......... Sk5 .......... .......... .....a.... .......... t......... Sk1 .......... .......... .....a.... .......... t......... Ks101 .......c.. .......... .....a.... .......... t......... Ks106 .......c.. .......... .....a.... .......... t......... Sk9 ....c..c.. .......... .....a.... .......... ta........ S22 ....c..c.. .......... .....a.... .......... ta........ Sk2 ....c..c.. .......... .....a.... .......... ta........ Sk6 ....c..c.. .......... .....a.... .......... ta........ Sk23 ....c..c.. .......... .....a.... .......... ta........ El111 ....c..c.. .......... .....a.... .......... ta........ PL3uf .......c.. .......... .....a.... .......... t......... Sk31 .......... .......... .....a.... .......... t......... Sk7 .......... .......... .....a.... .......... t......... Sk3 .......... .......... .....a.... .......... t......... Sc7 ---------- ---------- -----a.... .......... t......... C105 .......... .......... .....a.... ....a..... t......... Sc3 ---------- ---------- -----a.... .......... t......... Sc4 ---------- ---------- -----a.... .......... t......... Sk30 .......... .......... .....a.... .......... t......... Sk4 .......... .......... .....a.... .......... t......... Sk29 .......... .......... .....a.... .......... t......... Sk20 .......... .......... .....a.... .......... t......... PL2 .......... .......... .....a.... .......... t......... [ 6900 ' ' ' ' ] L1MdA2 CACCCCATAA TCAGCATCCA AACGCTGACA CCATTGCATA CACTAGCAAG TFnode2 .......... .......... .......... .......... t......... Saf .......... .......... ..t....... .......... .......... Ks105 .......... .......... ..t....... ........c. .......... Sk11 .......... .......... ..t....... ........c. .......... Sk13 .......... .......... ..t....... ........c. .......... Sk5 .......... .......... ..t....... ........c. .......... Sk1 .......... .......... ..t....... ........c. .......... Ks101 .......... .......... ..t....... ........c. .......... Ks106 ..a....... .......... ..t....... ........c. .......... Sk9 .......... .......... ..t....... ........c. .......... S22 .--------- ---------- ---------- ---------- ---------- Sk2 .......... .......... ..t....... ........c. .......... Sk6 .......... .......... ..t....... ........c. .......... Sk23 .......... .......... ..t....... ........c. .......... El111 .......... .......... ..t....... ........c. .......... PL3uf .......... .......... ..t....... ........c. .......... Sk31 .......... .......... ..t....... ........c. .......... Sk7 .......... .......... ..t....... ........c. .......... Sk3 .......... .......... ..t....... ........c. .......... Sc7 .......... .......... ..t....... ........c. .......... C105 .......... .......... ..t....... ........c. .......... Sc3 .......... .......... ..t....... ........c. .......... Sc4 .......... .......... ..t....... ........c. .......... Sk30 .......... .......... ..t....... ........c. .......... Sk4 .......... .......... ..t....... ........c. .......... Sk29 .......... .......... ..t....... ........c. .......... Sk20 .......... .......... ..t....... ........c. .......... PL2 .......... .......... ..t....... ........c. .......... [ 6950 ' ' ' ' ] L1MdA2 ATTTTATTGA AAGGACGCAG ATGTAGCTGT CTCTTGTGAG ACTATGCCGG TFnode2 .......c.. ......c... .......... .......... .......... Saf ......c... ....g.c... .......... .......... .......... Ks105 ......c... ......c... .......... .......... .......... Sk11 ......c... ......c... .......... .......... .......... Sk13 .....tc... ......c... .......... .......... .......... Sk5 ......c... ......c... .......... .......... .......... Sk1 ......c... ......c... .......... .......... .......... Ks101 ......c... ......c... .......... .......... .......... Ks106 ......c... ......c... .......... .......... .......... Sk9 ......c... ......c... .......... .......... .......... S22 ---------- ---------- ---------- ---------- ---------- Sk2 ......c... ......c... .......... ...a...... .......... Sk6 ......c... ......c... .......... ...a...... .......... Sk23 ......c... ......c... .......... ...a...... .......... El111 ......c... ......c... .......... ...a...... .......... PL3uf ......c... ......c... .......... .......... .......... Sk31 ......c... ......c... .......... .......... .......... Sk7 ......c... ......c... .......... .......... .......... Sk3 ......c... ......c... .......... .......... .......... Sc7 ......c... ......c... .......... .......... .......... C105 ......c... ......c... .......... .......... .......... Sc3 ......c... ......c... .......... .......... .......... Sc4 ......c... ......c... .......... .......... .......... Sk30 ......c... ......c... .......... .......... .......... Sk4 ......c... ......c... .......... .......... .......... Sk29 ......c... ......c... .......... .......... .......... Sk20 ......c... ......c... .......... .......... .......... PL2 ......c... ......c... .......... .......... .......... [ 7000 ' ' ' ' ] L1MdA2 GGCCCAGCAA ACACAGAAGT GGATGCTCAC AGTCAGCTAA TGGATGGATC TFnode2 ....t..... .......... .......... .......... .......... Saf ....t..... .......... .......... .......... .......... Ks105 ....t..... .......... .......... .......... .......... Sk11 ....t..... .......... .......... .......... .......... Sk13 ....t..... .......... .......... .......... .......... Sk5 ....t..... .......... .......... .......... ......a... Sk1 ....t..... .......... .......... .......... .......... Ks101 ....t..... .......... .......... .......... .......... Ks106 ....t..... .......... .......... .......... .......... Sk9 ....t..... .......... .......... .......... .......... S22 ---------- ---------- ---------- ---------- ---------- Sk2 ....t..... .......... .......... .......... .......... Sk6 ....t..... .......... .......... .......... .......... Sk23 ....t..... .......... .......... .......... .......... El111 ....t..... .......... .......... .......... .......... PL3uf ....t..... .......... .......... .......... .......... Sk31 ....t..... .......... .......... .......... .......... Sk7 ....t..... .......... .......... .......... .......... Sk3 ....t..... .......... .......... .....c.... .......... Sc7 ....t..... .......... .......... .......... .......... C105 ....t..... .......... ......c... .......... .......... Sc3 ....t..... .......... ......c... .......... .......... Sc4 ....t..... .......... ......c... .......... .......... Sk30 ....t..... .......... ......c... .......... .......... Sk4 ....t..... .......... ......c... .......... .......... Sk29 ....t..... .......... ......c... .......... .......... Sk20 ....t..... .......... ......c... .......... .......... PL2 ....t..... .......... ......c... .......... .......... [ 7050 ' ' ' ' ] L1MdA2 ATAGGGCTCC CAATGGAGGA GCTAGAGAAA GTAGCCAAGG AGCTAAAGGG TFnode2 .c........ .......... .......... ...c...... .......... Saf .c........ .......... .......... ...c...... .......... Ks105 .c........ .......... .......... ...c...... .......... Sk11 .c........ .......... .......... ...c...... .......... Sk13 .c........ .......... .......... ...c...... .......... Sk5 .c........ .......... .......... ...c...... .......... Sk1 .c........ .......... .......... ...c...... .......... Ks101 .c........ .......... .......... ...c...... .......... Ks106 .c........ .......... .......... ...c...... .......... Sk9 .c........ .......... .......... ...c...... .......... S22 ---------- ---------- ---------- ---------- ---------- Sk2 .c........ .......... .......... ...c...... .......... Sk6 .c........ .......... .......... ...c...... .......... Sk23 .c........ .......... .......... ...c...... .......... El111 .c........ .......... .......... ...c...... .......... PL3uf .c........ .......... .......... ...c...... .......... Sk31 .c........ .......... .......... ...c...... .......... Sk7 .c........ .......... .......... ...c...... .......... Sk3 .c........ .......... .......... ...c...... .......... Sc7 .c........ .......... .......... ...c...... .......... C105 .c........ .......... .......... ...c...... .......... Sc3 .c.......t .......... .......... ...c...... .......... Sc4 .c........ .......... .......... ...c...... .......... Sk30 .c........ .......... .......... ...c...... .......... Sk4 .c........ .......... .......... ...c...... .......... Sk29 .c........ .......... .......... ...c...... .......... Sk20 .c........ .......... .......... ...c...... .......... PL2 .c........ .......... .......... ...c...... .......... [ 7100 ' ' ' ' ] L1MdA2 ATCTGCAACC CTATAGGTGG AACAACATTA TGAGCTAACC AGTACCCCGG TFnode2 ....t..... .......... .......... ...a...... ........t. Saf ....t..... ....------ ---------- ---------- ---------- Ks105 ....t..... ........a- ---------- ---------- ---------- Sk11 ....t..... .........- ---------- ---------- ---------- Sk13 ....t..... .........- ---------- ---------- ---------- Sk5 ....t..... .........- ---------- ---------- ---------- Sk1 ....t..... .......... .......... ...a...... ........t. Ks101 ....t..... .......... .......... ...a...... ........t. Ks106 ....t..... .......... .......... ...a...... ........t. Sk9 ....t..... .......... .......... ...a...... ........t. S22 ---------- ---------- ---------- ---------- ---------- Sk2 ....t..... .......... .......... ...a...... ........t. Sk6 ....t..... .......... .......... ...a...... ........t. Sk23 ....t..... .......... .......... ...a...... ........t. El111 ....t..... .......... .......... ...a...... ........t. PL3uf ....t..... .......... .......... ...a...... ........t. Sk31 ....t..... .........- ---------- ---------- ---------- Sk7 ....t..... .........- ---------- ---------- ---------- Sk3 ....t..... .........- ---------- ---------- ---------- Sc7 ....t..... .......... .......... ...a...... ........t. C105 ....t..... .......... .......... ...a...... ........t. Sc3 ....t..... .......... .......... ...a...... ........t. Sc4 ....t..... .......... g......... ...a...... ........t. Sk30 ....t..... .......... .......... ...a...... ........t. Sk4 ....t..... .......... .......... ...a...... ........t. Sk29 ....t..... .......... .......... ...a...... ........t. Sk20 ....t..... .......... .......... ...a...... ........t. PL2 ....t..... .......... .......... ...a...... ........t. [ 7150 ' ' ' ' ] L1MdA2 AGCTCTTGAC TCTAGCTGCA TATATATCAA AAGATGGCCT AGTCGGCCAT TFnode2 .......... .......... ...g...... .......... .......... Saf ---------- ---------- ---------- ---------- ---------- Ks105 ---------- ---------- ---------- ---------- ---------- Sk11 ---------- ---------- ---------- ---------- ---------- Sk13 ---------- ---------- ---------- ---------- ---------- Sk5 ---------- ---------- ---------- ---------- ---------- Sk1 .....----- ---------- ---------- ---------- ---------- Ks101 .....----- ---------- ---------- ---------- ---------- Ks106 .....----- ---------- ---------- ---------- ---------- Sk9 .....----- ---------- ---------- ---------- ---------- S22 ---------- ---------- ---------- ---------- ---------- Sk2 .....----- ---------- ---------- ---------- ---------- Sk6 .....----- ---------- ---------- ---------- ---------- Sk23 .....----- ---------- ---------- ---------- ---------- El111 .......... .......... ...g...... .......... .......... PL3uf .......... .......... ...g...... .......... .......... Sk31 ---------- ---------- ---------- ---------- ---------- Sk7 ---------- ---------- ---------- ---------- ---------- Sk3 ---------- ---------- ---------- ---------- ---------- Sc7 .......... .......... ...g...... .......... .......... C105 .......... .......... ...g...... .......... .......... Sc3 .......... .......... ...g...... .......... .......... Sc4 .......... .......... ...g...... .......... .......... Sk30 .....----- ---------- ---------- ---------- ---------- Sk4 .....----- ---------- ---------- ---------- ---------- Sk29 .....----- ---------- ---------- ---------- ---------- Sk20 .....----- ---------- ---------- ---------- ---------- PL2 .......... .......... ...g...... ....a..... .......... [ 7200 ' ' ' ' ] L1MdA2 CACTGGAAAG AGAGGCCCAT TGGACTTGCA AACTTTATAT GCCCCAGTAC TFnode2 .......... .......... .....ac... g.....g.g. .....g.... Saf ---------- ---------- ---------- ---------- ---------- Ks105 ---------- ---------- ---------- ---------- ---------- Sk11 ---------- ---------- ---------- ---------- ---------- Sk13 ---------- ---------- ---------- ---------- ---------- Sk5 ---------- ---------- ---------- ---------- ---------- Sk1 ---------- ---------- ---------- ---------- ---------- Ks101 ---------- ---------- ---------- ---------- ---------- Ks106 ---------- ---------- ---------- ---------- ---------- Sk9 ---------- ---------- ---------- ---------- ---------- S22 ---------- ---------- ---------- ---------- ---------- Sk2 ---------- ---------- ---------- ---------- ---------- Sk6 ---------- ---------- ---------- ---------- ---------- Sk23 ---------- ---------- ---------- ---------- ---------- El111 ..a....... .......... .....ac... .......... .......... PL3uf ..a....... .......... .....ac... .......... .......... Sk31 ---------- ---------- ---------- ---------- ---------- Sk7 ---------- ---------- ---------- ---------- ---------- Sk3 ---------- ---------- ---------- ---------- ---------- Sc7 .......... .......... .....ac... .......... .......... C105 .......... .......... .....ac... .......... .......... Sc3 .......... .......... .....ac... .......... .......... Sc4 .......... .......... .....ac... .......... .......... Sk30 ---------- ---------- ---------- ---------- ---------- Sk4 ---------- ---------- ---------- ---------- ---------- Sk29 ---------- ---------- ---------- ---------- ---------- Sk20 ---------- ---------- ---------- ---------- ---------- PL2 .......... .......... .....ac... .......... .......... [ 7250 ' ' ' ' ] L1MdA2 AGGGGAATAC CAGGGCCAAA AAGGGGGAGT GGGTGGGCAG GGGAGTGGGG TFnode2 .......cg. .......... gg........ .......t.. .......... Saf ---------- ---------- ---------- ---------- ---------- Ks105 ---------- ---------- ---------- ---------- ---------- Sk11 ---------- ---------- ---------- ---------- ---------- Sk13 ---------- ---------- ---------- ---------- ---------- Sk5 ---------- ---------- ---------- ---------- ---------- Sk1 ---------- ---------- ---------- ---------- ---------- Ks101 ---------- ---------- ---------- ---------- ---------- Ks106 ---------- ---------- ---------- ---------- ---------- Sk9 ---------- ---------- ---------- ---------- ---------- S22 ---------- ---------- ---------- ---------- ---------- Sk2 ---------- ---------- ---------- ---------- ---------- Sk6 ---------- ---------- ---------- ---------- ---------- Sk23 ---------- ---------- ---------- ---------- ---------- El111 .......cg. .......g.. .......... .......t.. .......... PL3uf .......cg. .......g.. .......... .......t.. .......... Sk31 ---------- ---------- ---------- ---------- ---------- Sk7 ---------- ---------- ---------- ---------- ---------- Sk3 ---------- ---------- ---------- ---------- ---------- Sc7 .......cg. .......g.. .......... .......t.- ---------- C105 .......cg. .......g.. .......... .......t.. .......... Sc3 .......cg. .......g.. .......... .......t.- ---------- Sc4 .......cg. .......g.. .......... .......t.- ---------- Sk30 ---------- ---------- ---------- ---------- ---------- Sk4 ---------- ---------- ---------- ---------- ---------- Sk29 ---------- ---------- ---------- ---------- ---------- Sk20 ---------- ---------- ---------- ---------- ---------- PL2 .......cg. .......g.. .......... .......t.. .......... [ 7300 ' ' ' ' ] L1MdA2 GTGGGTGGAT ATGGGGGACT TTTGGTATAG CATTGGAAAT GTAAATGAGT TFnode2 ........g. .a........ .......... .......... .........c Saf ---------- ---------- ---------- ---------- ---------- Ks105 ---------- ---------- ---------- ---------- ---------- Sk11 ---------- ---------- ---------- ---------- ---------- Sk13 ---------- ---------- ---------- ---------- ---------- Sk5 ---------- ---------- ---------- ---------- ---------- Sk1 ---------- ---------- ---------- ---------- ---------- Ks101 ---------- ---------- ---------- ---------- ---------- Ks106 ---------- ---------- ---------- ---------- ---------- Sk9 ---------- ---------- ---------- ---------- ---------- S22 ---------- ---------- ---------- ---------- ---------- Sk2 ---------- ---------- ---------- ---------- ---------- Sk6 ---------- ---------- ---------- ---------- ---------- Sk23 ---------- ---------- ---------- ---------- ---------- El111 ........g. .......... .......... .......... .........c PL3uf ........g. .......... .......--- ---------- ---------- Sk31 ---------- ---------- ---------- ---------- ---------- Sk7 ---------- ---------- ---------- ---------- ---------- Sk3 ---------- ---------- ---------- ---------- ---------- Sc7 ---------- -......... .......... .......... .........c C105 ........g. .c........ .......... .......... .........c Sc3 ---------- -......... .......... .......... .........c Sc4 ---------- -......... .......... .......... .........c Sk30 ---------- ---------- ---------- ---------- ---------- Sk4 ---------- ---------- ---------- ---------- ---------- Sk29 ---------- ---------- ---------- ---------- ---------- Sk20 ---------- ---------- ---------- ---------- ---------- PL2 ........g. .......... .......... .......... .........c [ 7350 ' ' ] L1MdA2 TAAATACCTA ATAAAAAATG GAAAAAAAAA TFnode2 .......... .......... .......... Saf ---------- ---------- ---------- Ks105 ---------- ---------- ---------- Sk11 ---------- ---------- ---------- Sk13 ---------- ---------- ---------- Sk5 ---------- ---------- ---------- Sk1 ---------- ---------- ---------- Ks101 ---------- ---------- ---------- Ks106 ---------- ---------- ---------- Sk9 ---------- ---------- ---------- S22 ---------- ---------- ---------- Sk2 ---------- ---------- ---------- Sk6 ---------- ---------- ---------- Sk23 ---------- ---------- ---------- El111 .......... .......... .g........ PL3uf ---------- ---------- ---------- Sk31 ---------- ---------- ---------- Sk7 ---------- ---------- ---------- Sk3 ---------- ---------- ---------- Sc7 .......... .....----- ---------- C105 .......... .....----- ---------- Sc3 .......... .....----- ---------- Sc4 .......... .....----- ---------- Sk30 ---------- ---------- ---------- Sk4 ---------- ---------- ---------- Sk29 ---------- ---------- ---------- Sk20 ---------- ---------- ---------- PL2 .......... .......... a......... ; End;