#NEXUS [!Imported GCG-MSF file "c:\tf\tf2.nxx" (Wed Sep 29 10:52:01 1999)] [ Tf2.Msf MSF: 5883 Type: N September 29, 1999 10:04 Check: 196 .. ] Begin data; Dimensions ntax=26 nchar=5883; Format datatype=DNA interleave gap=- matchchar=.; Matrix [ ' 1550 ' ' ' ] L1mdA2 ACTTCTGCCA GGAGTCTGGT TCGAACACCA GATATCTGGG TACCTGCCTT Dat ---------- ---------- ---------- ---------- ---------- Af081112 t....g.... ....-ga... c.a..t..a. ........c. c....t..c. Af081107 t....g.... ....-ga..c c.a..t..a. ........c. c....t..c. Ac5938b t....g.... ....-ga... c.a..t..a. ........c. c....t..c. Tfnode2 t....g.... ....-ga... c.a..t..a. ........c. c....t..c. Ac4405lr ---------- ---------- ---------- ---------- ---------- Af081113 t....g.... ....-ga... c.a..t..a. ........c. c....t..c. Af081106 t....g.... ....-ga... c.a..t..a. ........c. c....t..c. D2 ---------- ---------- ---------- ---------- ---------- D3 ---------- ---------- ---------- ---------- ---------- L1md4 ---------- ---------- ---------- ---------- ---------- Dab ---------- ---------- ---------- ---------- ---------- Dar ---------- ---------- ---------- ---------- ---------- Daq ---------- ---------- ---------- ---------- ---------- Dap ---------- ---------- ---------- ---------- ---------- Daa ---------- ---------- ---------- ---------- ---------- Dae ---------- ---------- ---------- ---------- ---------- Dan ---------- ---------- ---------- ---------- ---------- L1orl t....g.... ....-ga... c.a..t..a. ........c. c....t..c. Musmht ---------- ---------- ---------- ---------- ---------- Dad ---------- ---------- ---------- ---------- ---------- Af081111 t....g.... ....-ga... c.a..t..a. ........c. c....t..c. Af081109 t....g.... ....-ga... c.a..t..a. ........c. c....t..c. L1spa t....gt... ....-ga... c.a..t..a. ........c. c....t..c. Tfnode1 t....g.... ....-ga... c.a..t..a. ........c. c....t..c. [ ' 1600 ' ' ' ] L1mdA2 GCAAGAAGAG AGCTTGCCTG CAGAGAATAC TCTGCCCACT GAAACT-A-A Dat ---------- ---------- ---------- ---------- ---------- Af081112 .t....---. ........a. ......g.g. ....ag.... ......c.g. Af081107 .t....---. ........a. ......g.g. ....ag.... ......c.g. Ac5938b .t....---. ........a. ......g.g. ....ag.... ......c.g. Tfnode2 .t....---. ........a. ......g.g. ....ag.... ......c.g. Ac4405lr ---------- ---------- ---------- ---------- ---------- Af081113 .t....---. ........a. ......g.g. ....ag.... ......c.g. Af081106 .t....---. ........a. ......g.g. ....ag.... ......c.g. D2 ---------- ---------- ---------- ---------- ---------- D3 ---------- ---------- ---------- ---------- ---------- L1md4 ---------- ---------- ---------- ---------- ---------- Dab ---------- ---------- ---------- ---------- ---------- Dar ---------- ---------- ---------- ---------- ---------- Daq ---------- ---------- ---------- ---------- ---------- Dap ---------- ---------- ---------- ---------- ---------- Daa ---------- ---------- ---------- ---------- ---------- Dae ---------- ---------- ---------- ---------- ---------- Dan ---------- ---------- ---------- ---------- ---------- L1orl .t....---. ........a. ......g.g. ....ag.... ......c.g. Musmht ---------- ---------- ---------- ---------- ---------- Dad ---------- ---------- ---------- ---------- ---------- Af081111 .t....---. ........a. ......g.g. ....ag.... ......c.g. Af081109 .t....---. ........a. ......g.g. ....ag.... ......c.g. L1spa .t....---. ........a. ......g.g. ....ag.... ......c.g. Tfnode1 .t....---. ........a. ......g.g. ....ag.... ......c.g. [ ' 1650 ' ' ' ] L1mdA2 GGAGAGTGCT ACCCTCC-AG GTCTGCTCAT AGAGGCTAAC AGAGTCACCT Dat ---------- ---------- ---------- ---------- ---------- Af081112 ......aatc tgt....c.. .......g.. ...c.g.... ...a.....a Af081107 ......aatc tgt....c.. .......g.. ...c.g.... ...a.....a Ac5938b ......aatc tgt....c.. .......g.. ...c.g.... ...a.....a Tfnode2 ......aatc tgt....c.. .......g.. ...c.g.... ...a.....a Ac4405lr ---------- ---------- ---------- ---------- ---------- Af081113 ......aatc tgt....c.. .......g.. ...c.g.... ...a.....a Af081106 ......aatc tgt....c.. .......g.. ...c.g.... ...a.....a D2 ---------- ---------- ---------- ---------- ---------- D3 ---------- ---------- ---------- ---------- ---------- L1md4 ---------- ---------- ---------- ---------- ---------- Dab ---------- ---------- ---------- ---------- ---------- Dar ---------- ---------- ---------- ---------- ---------- Daq ---------- ---------- ---------- ---------- ---------- Dap ---------- ---------- ---------- ---------- ---------- Daa ---------- ---------- ---------- ---------- ---------- Dae ---------- ---------- ---------- ---------- ---------- Dan ---------- ---------- ---------- ---------- ---------- L1orl ......aatc tgt....c.. .......g.. ...c.g.... ...a.....a Musmht ---------- ---------- ---------- ---------- ---------- Dad ---------- ---------- ---------- ---------- ---------- Af081111 ......aatc tgt....c.. .......g.. ...c.g.... ...a.....a Af081109 ......aatc tgt....c.. .......g.. ...c.g.... ...a.....a L1spa ......aatc tgt....c.. .......g.. ...c.g.... ...a.....a Tfnode1 ......aatc tgt....c.. .......g.. ...c.g.... ...a.....a [ ' 1700 ' ' ' ] L1mdA2 GAAGAACAAG CTCTTAACAG TGACAACTAA AAC-AGCTAG CTTCAGAGAT Dat ---------- ---------- ---------- ---------- ---------- Af081112 .........t ....a..... a.t......t ...-ta...a ..c....... Af081107 .........t ....a..... a.t......t ...-ta...a ..c....... Ac5938b .........t ....a..... a.t......t ...-ta...a ..c....... Tfnode2 .........t ....a..... a.t......t ...-ta...a ..c....... Ac4405lr ---------- ---------- ---------- ---------- ---------- Af081113 .........t ....a..... a.t......t ...-ta...a ..c....... Af081106 .........t ....a..... a.t......t ...-ta...a ..c....... D2 ---------- ---------- ---------- ---------- ---------- D3 ---------- ---------- ---------- ---------- ---------- L1md4 ---------- ---------- ---------- ---------- ---------- Dab ---------- ---------- ---------- ---------- ---------- Dar ---------- ---------- ---------- ---------- ---------- Daq ---------- ---------- ---------- ---------- ---------- Dap ---------- ---------- ---------- ---------- ---------- Daa ---------- ---------- ---------- ---------- ---------- Dae ---------- ---------- ---------- ---------- ---------- Dan ---------- ---------- ---------- ---------- ---------- L1orl .........t ....a..... a.t......t ...-ta...a ..c....... Musmht ---------- ---------- ---------- ---------- ---------- Dad ---------- ---------- ---------- ---------- ---------- Af081111 .........t ....a..... a.t......t ...-ta...a ..c....... Af081109 .........t ....a..... a.t......t ...tta...a ..c....... L1spa .........t ....a..... a.t......t ...-ta...a ..c....... Tfnode1 .........t ....a..... a.t......t ...-ta...a ..c....... [ ' 1750 ' ' ' ] L1mdA2 TACCAGATGG CGAAAGGCAA ACGTAAGAAT CCTACTAACA GAAATCAAGA Dat ---------- ---------- ---------- ---------- ---------- Af081112 .......... .......t.. ..tg.g.... .t........ .g..c..... Af081107 .......... .......t.. ...g.g.... .t........ .g..c..... Ac5938b .......... .......t.. ...g.g.... .t........ .g..c..... Tfnode2 .......... .......t.. ...g.g.... .t........ .g..c..... Ac4405lr ---------- ---------- ---------- ---------- ---------- Af081113 .......... .......t.. ...g.g.... .t........ .g..c..... Af081106 .......... .......t.. ...g.g.... .t........ .g..c..... D2 ---------- ---------- ---------- ---------- ---------- D3 ---------- ---------- ---------- ---------- ---------- L1md4 ---------- ---------- ---------- ---------- ---------- Dab ---------- ---------- ---------- ---------- ---------- Dar ---------- ---------- ---------- ---------- ---------- Daq ---------- ---------- ---------- ---------- ---------- Dap ---------- ---------- ---------- ---------- ---------- Daa ---------- ---------- ---------- ---------- ---------- Dae ---------- ---------- ---------- ---------- ---------- Dan ---------- ---------- ---------- ---------- ---------- L1orl .......... .......t.. ...g.g.... .t........ .g..c..... Musmht ---------- ---------- ---------- ---------- ---------- Dad ---------- ---------- ---------- ---------- ---------- Af081111 .......... .......t.. ...g.g.... .t........ .g..c..... Af081109 .......... .......t.. ...g.g.... .t........ .g..c..... L1spa .......... .......t.. ...g.g.... .t........ .g..c..... Tfnode1 .......... .......t.. ...g.g.... .t........ .g..c..... [ ' 1800 ' ' ' ] L1mdA2 CCACTCACCA TCATCAGAAC GCAGCACTCC CACCCCACCT AGTCCTGGGC Dat ---------- ---------- ---------- ---------- ---------- Af081112 .......... ...c...... c......a.. ...tt.g..c .....a...a Af081107 .......... ...c...... c......a.. ...tt.g..c .....a...a Ac5938b .......... ...c...... c......a.. ...tt.g..c .....a...a Tfnode2 .......... ...c...... c......a.. ...tt.g..c .....a...a Ac4405lr ---------- ---------- ---------- ---------- ---------- Af081113 .......... ...c...... c......a.. ...tt.g..c .....a...a Af081106 .......... ...c...... c......a.. ...tt.g..c .....a...a D2 ---------- ---------- ---------- ---------- ---------- D3 ---------- ---------- ---------- ---------- ---------- L1md4 ---------- ---------- ---------- ---------- ---------- Dab ---------- ---------- ---------- ---------- ---------- Dar ---------- ---------- ---------- ---------- ---------- Daq ---------- ---------- ---------- ---------- ---------- Dap ---------- ---------- ---------- ---------- ---------- Daa ---------- ---------- ---------- ---------- ---------- Dae ---------- ---------- ---------- ---------- ---------- Dan ---------- ---------- ---------- ---------- ---------- L1orl .......... ...c...... c......a.. ...tt.g..c .....a...a Musmht ---------- ---------- ---------- ---------- ---------- Dad ---------- ---------- ---------- ---------- ---------- Af081111 .......... ...c...... c......a.. ...tt.g..c .....a...a Af081109 .......... ...c...... c......a.. ...tt.g..c .....a...a L1spa .......... ...c...... c......a.. ...tt.g..c .....a...a Tfnode1 .......... ...c...... c......a.. ...tt.g..c .....a...a [ ' 1850 ' ' ' ] L1mdA2 ACCCCAACAC AACCGAAAAT CTAGACCCAG ATTTAAAAAC ATTTCTCATG Dat ---------- ---------- ---------- ---------- ---------- Af081112 .......... .c.t..g..c .......t.. ........g. ..a....... Af081107 .......... .c.t..g..c .......t.. ........g. ..a....... Ac5938b .......... .c.t..g..c .......t.. ........g. ..a....... Tfnode2 .......... .c.t..g..c .......t.. ........g. ..a....... Ac4405lr ---------- ---------- ---------- ---------- ---------- Af081113 .......... .c.t..g..c .......t.. ........g. ..a....... Af081106 .......... .c.t..g..c .......t.. ........g. ..a....... D2 ---------- ---------- ---------- ---------- ---------- D3 ---------- ---------- ---------- ---------- ---------- L1md4 ---------- ---------- ---------- ---------- ---------- Dab ---------- ---------- ---------- ---------- ---------- Dar ---------- ---------- ---------- ---------- ---------- Daq ---------- ---------- ---------- ---------- ---------- Dap ---------- ---------- ---------- ---------- ---------- Daa ---------- ---------- ---------- ---------- ---------- Dae ---------- ---------- ---------- ---------- ---------- Dan ---------- ---------- ---------- ---------- ---------- L1orl .......... .c.t..g..c .......t.. ........g. ..a....... Musmht ---------- ---------- ---------- ---------- ---------- Dad ---------- ---------- ---------- ---------- ---------- Af081111 .......... .c.t..g..c .......t.. ........g. ..a....... Af081109 .......... .c.t..g..c .......t.. ........g. ..a....... L1spa .......... .c.t..g..c .......t.. ........g. ..a....... Tfnode1 .......... .c.t..g..c .......t.. ........g. ..a....... [ ' 1900 ' ' ' ] L1mdA2 ATGATGATAG AGGACATCAA GAAGGACTTT CATAAGTCAC TTAAAGATTT Dat ---------- ---------- ---------- ---------- ---------- Af081112 ......g... .......... .......... a....a.... .......aa. Af081107 ......g... .......... .......... a....a.... .......aa. Ac5938b ......g... .......... .......... a....a.... .......aa. Tfnode2 ......g... .......... .......... a....a.... .......aa. Ac4405lr ---------- ---------- ---------- ---------- ---------- Af081113 ......g... .......... .......... a....a.... .......aa. Af081106 ......g... .......... .......... a....a.... .......aa. D2 ---------- ---------- ---------- ---------- ---------- D3 ---------- ---------- ---------- ---------- ---------- L1md4 ---------- ---------- ---------- ---------- ---------- Dab ---------- ---------- ---------- ---------- ---------- Dar ---------- ---------- ---------- ---------- ---------- Daq ---------- ---------- ---------- ---------- ---------- Dap ---------- ---------- ---------- ---------- ---------- Daa ---------- ---------- ---------- ---------- ---------- Dae ---------- ---------- ---------- ---------- ---------- Dan ---------- ---------- ---------- ---------- ---------- L1orl ......g... .......... .......... a....a.... .......aa. Musmht ---------- ---------- ---------- ---------- ---------- Dad ---------- ---------- ---------- ---------- ---------- Af081111 ......g... .......t.. .......... a....a.... .......aa. Af081109 ......g... .......... .......... a....a.... .......aa. L1spa ......g... ...g...... .......... a....a.... .......aa. Tfnode1 ......g... .......... .......... a....a.... .......aa. [ ' 1950 ' ' ' ] L1mdA2 ACAGGAGAGC ACTGCTAAAG AGTTACAGGC TCTTAAAGAA AAGCAGGAAA Dat ---------- ---------- ---------- ---------- ---------- Af081112 ........a. .......... .......a.t c......... ..a....... Af081107 ........a. .......... .......a.t c......... ..a....... Ac5938b ........a. .......... .......a.t c......... ..a....... Tfnode2 ........a. .......... .......a.t c......... ..a....... Ac4405lr ---------- ---------- ---------- ---------- ---------- Af081113 ........a. .......... .......a.t c......... ..a....... Af081106 ........a. .......... .a.....a.t c......... ..a....... D2 ---------- ---------- ---------- ---------- ---------- D3 ---------- ---------- ---------- ---------- ---------- L1md4 ---------- ---------- ---------- ---------- ---------- Dab ---------- ---------- ---------- ---------- ---------- Dar ---------- ---------- ---------- ---------- ---------- Daq ---------- ---------- ---------- ---------- ---------- Dap ---------- ---------- ---------- ---------- ---------- Daa ---------- ---------- ---------- ---------- ---------- Dae ---------- ---------- ---------- ---------- ---------- Dan ---------- ---------- ---------- ---------- ---------- L1orl ........a. .......... .......a.t c......... ..a....... Musmht ---------- ---------- ---------- ---------- ---------- Dad ---------- ---------- ---------- ---------- ---------- Af081111 ........a. .......... .......a.t c......... ..a....... Af081109 ........a. .......... .......a.t c......... ..a....... L1spa ........a. .......... .......a.t c......... ..a....... Tfnode1 ........a. .......... .......a.t c......... ..a....... [ ' 2000 ] L1mdA2 ACACAGCCAA ACAGGT---- ---------- ---------- ---------- Dat ---------- ---------- ---------- ---------- ---------- Af081112 .....at... ......agaa gtccttacag aaaaagagga aaaaacatac Af081107 .....at... ......agaa gtccttacag aaaaagagga aaaaacatac Ac5938b .....at... ......agaa gtccttacag aaaaagagga aaaaacatac Tfnode2 .....at... ......agaa gtccttacag aaaaagagga aaaaacatac Ac4405lr ---------- ---------- ---------- ---------- ---------- Af081113 .....at... ......agaa gtccttacag aaaaagagga aaaaacatac Af081106 .....at... ......agaa gtccttacag aaaaagagga aaaaacatac D2 ---------- ---------- ---------- ---------- ---------- D3 ---------- ---------- ---------- ---------- ---------- L1md4 ---------- ---------- ---------- ---------- ---------- Dab ---------- ---------- ---------- ---------- ---------- Dar ---------- ---------- ---------- ---------- ---------- Daq ---------- ---------- ---------- ---------- ---------- Dap ---------- ---------- ---------- ---------- ---------- Daa ---------- ---------- ---------- ---------- ---------- Dae ---------- ---------- ---------- ---------- ---------- Dan ---------- ---------- ---------- ---------- ---------- L1orl .....at... ......agaa gtccttacag aaaaagagga aaaaacatac Musmht ---------- ---------- ---------- ---------- ---------- Dad ---------- ---------- ---------- ---------- ---------- Af081111 .....at... ......agaa gtccttacag aaaaagagga aaaaacatac Af081109 .....at... ......agaa gtccttacag aaaaagagga aaaaacatac L1spa .....at... ......agaa gtccttacag aaaaagagga aaaaacatac Tfnode1 .....at... ......agaa gtccttacag aaaaagagga aaaaacatac [ ' ' ' ' ] L1mdA2 --------GA TGGAAATGAA CAAAACCATA CTAGAACTAA AAGGGGAAGT Dat ---------- ---------- ---------- ---------- ---------- Af081112 aaacaggt.. .......... .......... .....c.... ..a....... Af081107 aaacaggt.. .......... .......... .....c.... ..a....... Ac5938b aaacaggt.. .......... .......... .....c.... ..a....... Tfnode2 aaacaggt.. .......... .......... .....c.... ..a....... Ac4405lr ---------- ---------- ---------- ---------- ---------- Af081113 aaacaggt.. .......... .......... .....c.... ..a....... Af081106 aaacaggt.. .......... .......... .....c.... ..a....... D2 ---------- ---------- ---------- ---------- ---------- D3 ---------- ---------- ---------- ---------- ---------- L1md4 ---------- ---------- ---------- ---------- ---------- Dab ---------- ---------- ---------- ---------- ---------- Dar ---------- ---------- ---------- ---------- ---------- Daq ---------- ---------- ---------- ---------- ---------- Dap ---------- ---------- ---------- ---------- ---------- Daa ---------- ---------- ---------- ---------- ---------- Dae ---------- ---------- ---------- ---------- ---------- Dan ---------- ---------- ---------- ---------- ---------- L1orl aaacaggt.. .......... .......... .....c.... ..a....... Musmht ---------- ---------- ---------- ---------- ---------- Dad ---------- ---------- ---------- ---------- ---------- Af081111 aaacaggt.. .......... .......... .....c.... ..a....... Af081109 aaacaggt.. .......... .......... .....c.... ..a....... L1spa aaacaggt.. .......... .......... .....c.... ..a....... Tfnode1 aaacaggt.. .......... .......... .....c.... ..a....... [ 2050 ' ' ' ' ] L1mdA2 AGACACAATA AAGAAAACCC AAAGCGAGGC AACGCTGGAG ATAGAAACCC Dat ---------- ---------- ---------- ---------- ---------- Af081112 .......... ........t. .......... ...a..a... .......... Af081107 .......... ........t. .......... ...a...... .......... Ac5938b .......... ........t. .......... ...a..a... .......... Tfnode2 .......... ........t. .......... ...a..a... .......... Ac4405lr ---------- ---------- ---------- ---------- ---------- Af081113 .......... ........t. .......... ...a..a... .......... Af081106 .......... ........t. .......... ...a..a... .......... D2 ---------- ---------- ---------- ---------- ---------- D3 ---------- ---------- ---------- ---------- ---------- L1md4 ---------- ---------- ---------- ---------- ---------- Dab ---------- ---------- ---------- ---------- ---------- Dar ---------- ---------- ---------- ---------- ---------- Daq ---------- ---------- ---------- ---------- ---------- Dap ---------- ---------- ---------- ---------- ---------- Daa ---------- ---------- ---------- ---------- ---------- Dae ---------- ---------- ---------- ---------- ---------- Dan ---------- ---------- ---------- ---------- ---------- L1orl .......... ........t. .......... ...a..a... .......... Musmht ---------- ---------- ---------- ---------- ---------- Dad ---------- ---------- ---------- ---------- ---------- Af081111 .......... ........t. .......... ...a..a... .......... Af081109 .......... ........t. .......... ...a..a... .......... L1spa .......... ........t. .......... ...a..a... .......... Tfnode1 .......... ........t. .......... ...a..a... .......... [ 2100 ' ' ' ' ] L1mdA2 TAGGAAAGAG ATCTGGAACC ATAGATGCGA GCATCAGCAA CAGAATACAA Dat ---------- ---------- ---------- ---------- ---------- Af081112 .........a .......... ......tt.. .......... .......... Af081107 .........a .......... ......tt.. .......... .......... Ac5938b .........a .......... ......tt.. .......... .......... Tfnode2 .........a .......... ......tt.. .......... .......... Ac4405lr ---------- ---------- ---------- ---------- ---------- Af081113 .........a .......... ......tt.. .......... .......... Af081106 .........a .......... ......tt.. .......... .......... D2 ---------- ---------- ---------- ---------- ---------- D3 ---------- ---------- ---------- ---------- ---------- L1md4 ---------- ---------- ---------- ---------- ---------- Dab ---------- ---------- ---------- ---------- ---------- Dar ---------- ---------- ---------- ---------- ---------- Daq ---------- ---------- ---------- ---------- ---------- Dap ---------- ---------- ---------- ---------- ---------- Daa ---------- ---------- ---------- ---------- ---------- Dae ---------- ---------- ---------- ---------- ---------- Dan ---------- ---------- ---------- ---------- ---------- L1orl .........a .......... ......tt.. .......... .......... Musmht ---------- ---------- ---------- ---------- ---------- Dad ---------- ---------- ---------- ---------- ---------- Af081111 .........a .......... ......tt.. .......... .......... Af081109 .........a .......... ......tt.. .......... .......... L1spa .........a .......... ......tt.. .......... .......... Tfnode1 .........a .......... ......tt.. .......... .......... [ 2150 ' ' ' ' ] L1mdA2 GAAATGGAAG AGAGAATCTC AGGTGCAGAA GATTCCATAG AGAACATCGA Dat ---------- ---------- ---------- ---------- ---------- Af081112 ..g....... .......... .......... .......... .........g Af081107 ..g....... .......... .......... .......... .........g Ac5938b ..g....... .......... .......... .......... .........g Tfnode2 ..g....... .......... .......... .......... .........g Ac4405lr ---------- ---------- ---------- ---------- ---------- Af081113 ..g....... .......... .......... .......... .........g Af081106 ..g....... .......... .......... .......... .........g D2 ---------- ---------- ---------- ---------- ---------- D3 ---------- ---------- ---------- ---------- ---------- L1md4 ---------- ---------- ---------- ---------- ---------- Dab ---------- ---------- ---------- ---------- ---------- Dar ---------- ---------- ---------- ---------- ---------- Daq ---------- ---------- ---------- ---------- ---------- Dap ---------- ---------- ---------- ---------- ---------- Daa ---------- ---------- ---------- ---------- ---------- Dae ---------- ---------- ---------- ---------- ---------- Dan ---------- ---------- ---------- ---------- ---------- L1orl ..g....... .......... .......... .......... .........g Musmht ---------- ---------- ---------- ---------- ---------- Dad ---------- ---------- ---------- ---------- ---------- Af081111 ..g....... .......... .......... .......... .........g Af081109 ..g....... .......... .......... .......... .........g L1spa ..g....... .......... .......... c......... .........g Tfnode1 ..g....... .......... .......... .......... .........g [ 2200 ' ' ' ' ] L1mdA2 CACAACAGTC AAAGAAAATA CAAAATGCAA AAGGATCCTA ACTCAAAACA Dat ---------- ---------- ---------- ---------- ---------- Af081112 .......a.. .........g g......... ..a....... ........t. Af081107 .......a.. .........g g......... ..a....... ........t. Ac5938b .......a.. .........g g......... ..a....... ........t. Tfnode2 .......a.. .........g g......... ..a....... ........t. Ac4405lr ---------- ---------- ---------- ---------- ---------- Af081113 .......a.. .........g g......... ..a....... ........t. Af081106 .......a.. .........g g......... ..a....... ........t. D2 ---------- ---------- ---------- ---------- ---------- D3 ---------- ---------- ---------- ---------- ---------- L1md4 ---------- ---------- ---------- ---------- ---------- Dab ---------- ---------- ---------- ---------- ---------- Dar ---------- ---------- ---------- ---------- ---------- Daq ---------- ---------- ---------- ---------- ---------- Dap ---------- ---------- ---------- ---------- ---------- Daa ---------- ---------- ---------- ---------- ---------- Dae ---------- ---------- ---------- ---------- ---------- Dan ---------- ---------- ---------- ---------- ---------- L1orl .......a.. .........g g......... ..a....... ........t. Musmht ---------- ---------- ---------- ---------- ---------- Dad ---------- ---------- ---------- ---------- ---------- Af081111 .......a.. .........g g......... ..a....... ........t. Af081109 .......a.. .........g g......... ..a....... ........t. L1spa .......a.. .........g g......... ..a....... ........t. Tfnode1 .......a.. .........g g......... ..a....... ........t. [ 2250 ' ' ' ' ] L1mdA2 TCCAGGTAAT CCAGGACACA ATGAGAAGAC CAAACCTACG GATAATAGGA Dat ---------- ---------- ---------- ---------- ---------- Af081112 ......a... .......... ..a....... .....g.... .......... Af081107 ......a... .......... ..a....... .....g.... .......... Ac5938b ......a... .......... ..a....... .....g.... .......... Tfnode2 ......a... .......... ..a....... .....g.... .......... Ac4405lr ---------- ---------- ---------- ---------- ---------- Af081113 ......a... .......... ..a....... .....a.... .......... Af081106 ......a... .......... ..a....... .....g.... .......... D2 ---------- ---------- ---------- ---------- ---------- D3 ---------- ---------- ---------- ---------- ---------- L1md4 ---------- ---------- ---------- ---------- ---------- Dab ---------- ---------- ---------- ---------- ---------- Dar ---------- ---------- ---------- ---------- ---------- Daq ---------- ---------- ---------- ---------- ---------- Dap ---------- ---------- ---------- ---------- ---------- Daa ---------- ---------- ---------- ---------- ---------- Dae ---------- ---------- ---------- ---------- ---------- Dan ---------- ---------- ---------- ---------- ---------- L1orl ......a... .......... ..a....... .....g.... .......... Musmht ---------- ---------- ---------- ---------- ---------- Dad ---------- ---------- ---------- ---------- ---------- Af081111 ......a... .......... ..a....... .....g.... .......... Af081109 ......a... .......... ..a....... .....g.... .......... L1spa ......a... .......... ..a....... .....g.... .......... Tfnode1 ......a... .......... ..a....... .....g.... .......... [ 2300 ' ' ' ' ] L1mdA2 ATTGATGAGA ATGAAGATTT TCAACTTAAA GGGCCAGCTA ATATCTTCAA Dat ---------- ---------- ---------- ---------- ---------- Af081112 g.g....... .......... ......c... ..t.....a. .c........ Af081107 g.g....... .......... ......c... ..t.....a. .c........ Ac5938b g.g....... .......... ......c... ..t.....a. .c........ Tfnode2 g.g....... .......... ......c... ..t.....a. .c........ Ac4405lr ---------- ---------- ---------- ---------- ---------- Af081113 g.g....... .......... ......c... ..t.....a. .c........ Af081106 g.g....... .......... ......c... ..t.....a. .c........ D2 ---------- ---------- ---------- ---------- ---------- D3 ---------- ---------- ---------- ---------- ---------- L1md4 ---------- ---------- ---------- ---------- ---------- Dab ---------- ---------- ---------- ---------- ---------- Dar ---------- ---------- ---------- ---------- ---------- Daq ---------- ---------- ---------- ---------- ---------- Dap ---------- ---------- ---------- ---------- ---------- Daa ---------- ---------- ---------- ---------- ---------- Dae ---------- ---------- ---------- ---------- ---------- Dan ---------- ---------- ---------- ---------- ---------- L1orl g.g....... .......... ......c... ..t.....a. .c........ Musmht ---------- ---------- ---------- ---------- ---------- Dad ---------- ---------- ---------- ---------- ---------- Af081111 g.g....... .......... ......c... ..t.....a. .c........ Af081109 g.g....... .......... ......c... ..t.....a. .c........ L1spa g.g....... .......... ......c... ..t.....a. .c........ Tfnode1 g.g....... .......... ......c... ..t.....a. .c........ [ 2350 ' ' ' ' ] L1mdA2 CAAAATAATA GAAGAAAACT TCCCAAACAT AAAAAAAGAG ATGCCCATGA Dat ---------- ---------- ---------- ---------- ---------- Af081112 ......t..t .......... .......tc. ...g..t... ....at.... Af081107 ......t..t .......... .......tc. ...g..t... ....at.... Ac5938b ......t..t .......... .......tc. ...g..t... ....at.... Tfnode2 ......t..t .......... .......tc. ...g..t... ....at.... Ac4405lr ---------- ---------- ---------- ---------- ---------- Af081113 ......t..t .......... .......tc. ...g..t... ....at.... Af081106 ......t..t .......... .......tc. ...g..t... ....at.... D2 ---------- ---------- ---------- ---------- ---------- D3 ---------- ---------- ---------- ---------- ---------- L1md4 ---------- ---------- ---------- ---------- ---------- Dab ---------- ---------- ---------- ---------- ---------- Dar ---------- ---------- ---------- ---------- ---------- Daq ---------- ---------- ---------- ---------- ---------- Dap ---------- ---------- ---------- ---------- ---------- Daa ---------- ---------- ---------- ---------- ---------- Dae ---------- ---------- ---------- ---------- ---------- Dan ---------- ---------- ---------- ---------- ---------- L1orl ......t..t .......... .......tc. ...g..t... ....at.... Musmht ---------- ---------- ---------- ---------- ---------- Dad ---------- ---------- ---------- ---------- ---------- Af081111 ......t..t .......... .......tc. ...g..t... ....at.... Af081109 ......t..t .......... .......tc. ...g..t... ....at.... L1spa ......t..t .......... .......tc. ...g..t... ....at.... Tfnode1 ......t..t .......... .......tc. ...g..t... ....at.... [ 2400 ' ' ' ' ] L1mdA2 TCATACAAGA AGCATACAGA ACTCCAAATA GACTGGACCA GAAAAGAAAT Dat ---------- ---------- ---------- ---------- ---------- Af081112 a......... ...c...... .......... .......... .......... Af081107 a......... ...c...... .......... .......... .......... Ac5938b a......... ...c...... .......... .......... .......... Tfnode2 a......... ...c...... .......... .......... .......... Ac4405lr ---------- ---------- ---------- ---------- ---------- Af081113 a......... ...c...... .......... .......... .......... Af081106 a......... ...c...... .......... .......... .......... D2 ---------- ---------- ---------- ---------- ---------- D3 ---------- ---------- ---------- ---------- ---------- L1md4 ---------- ---------- ---------- ---------- ---------- Dab ---------- ---------- ---------- ---------- ---------- Dar ---------- ---------- ---------- ---------- ---------- Daq ---------- ---------- ---------- ---------- ---------- Dap ---------- ---------- ---------- ---------- ---------- Daa ---------- ---------- ---------- ---------- ---------- Dae ---------- ---------- ---------- ---------- ---------- Dan ---------- ---------- ---------- ---------- ---------- L1orl a......... ...c...... .......... .......... .......... Musmht ---------- ---------- ---------- ---------- ---------- Dad ---------- ---------- ---------- ---------- ---------- Af081111 a......... ...c...... .......... .......... .......... Af081109 a......... ...c...... .......... .......... .......... L1spa a......... ...c...... .......... .......... .......... Tfnode1 a......... ...c...... .......... .......... .......... [ 2450 ' ' ' ' ] L1mdA2 TCCTCCCGAC ACATAATAAT CAGAACAACA AATGCACTAA ATAAAGATAG Dat ---------- ---------- ---------- ---------- ---------- Af081112 .......... .......... .......t.. .......... .......... Af081107 .......... .......... .......t.. .......... .......... Ac5938b .......... .......... .......t.. .......... .......... Tfnode2 .......... .......... .......t.. .......... .......... Ac4405lr ---------- ---------- ---------- ---------- ---------- Af081113 .......... .......... .......t.. .......c.. .......... Af081106 .......... .......... .......t.. .......... .......... D2 ---------- ---------- ---------- ---------- ---------- D3 ---------- ---------- ---------- ---------- ---------- L1md4 ---------- ---------- ---------- ---------- ---------- Dab ---------- ---------- ---------- ---------- ---------- Dar ---------- ---------- ---------- ---------- ---------- Daq ---------- ---------- ---------- ---------- ---------- Dap ---------- ---------- ---------- ---------- ---------- Daa ---------- ---------- ---------- ---------- ---------- Dae ---------- ---------- ---------- ---------- ---------- Dan ---------- ---------- ---------- ---------- ---------- L1orl .......... .......... .......t.. ......t... .......... Musmht ---------- ---------- ---------- ---------- ---------- Dad ---------- ---------- ---------- ---------- ---------- Af081111 .......... .......... .......t.. .......... .......... Af081109 .......... .......... .......t.. .......... .......... L1spa .......... .......... .......t.. .......... .......... Tfnode1 .......... .......... .......t.. .......... .......... [ 2500 ' ' ' ' ] L1mdA2 AATATTAAAA GCAGTAAGGG AGAAAGGTCA AGTAACATAT AAAGGAAGGC Dat ---------- ---------- ---------- ---------- ---------- Af081112 ....c..... .......... .a........ .......... .......a.. Af081107 ....c..... .......... .a........ .......... .....c.a.. Ac5938b ....c...g. .......... .a........ .......... .....c.a.. Tfnode2 ....c..... .......... .a........ .......... .....c.a.. Ac4405lr ---------- ---------- ---------- ---------- ---------- Af081113 ....c..... .......... .a........ .......... .....c.a.. Af081106 ....c..... .......... .a........ .......... .....c.a.. D2 ---------- ---------- ---------- ---------- ---------- D3 ---------- ---------- ---------- ---------- ---------- L1md4 ---------- ---------- ---------- ---------- ---------- Dab ---------- ---------- ---------- ---------- ---------- Dar ---------- ---------- ---------- ---------- ---------- Daq ---------- ---------- ---------- ---------- ---------- Dap ---------- ---------- ---------- ---------- ---------- Daa ---------- ---------- ---------- ---------- ---------- Dae ---------- ---------- ---------- ---------- ---------- Dan ---------- ---------- ---------- ---------- ---------- L1orl ....c..... .......... .a........ .......... .....c.a.. Musmht ---------- ---------- ---------- ---------- ---------- Dad ---------- ---------- ---------- ---------- ---------- Af081111 ....c..... .......... .a........ .......... .....c.a.. Af081109 ....c..... .......... .a........ .......... .....c.a.. L1spa ....c..... .......... .a........ .......... .....c.a.. Tfnode1 ....c..... .......... .a........ .......... .....c.a.. [ 2550 ' ' ' ' ] L1mdA2 CTATCAGAAT TACACCAGAC TTTTCACCAG AGACTATGAA AGCCAGAAGA Dat ---------- ---------- ---------- ---------- ---------- Af081112 .......... .........t .......... .......... .......... Af081107 .......... .........t .......... .......... .......... Ac5938b .......... .........t .......... .......... .......... Tfnode2 .......... .........t .......... .......... .......... Ac4405lr ---------- ---------- ---------- ---------- ---------- Af081113 .......... .........t .......... .......... .......... Af081106 .......... .........t c......... .......... .......... D2 ---------- ---------- ---------- ---------- ---------- D3 ---------- ---------- ---------- ---------- ---------- L1md4 ---------- ---------- ---------- ---------- ---------- Dab ---------- ---------- ---------- ---------- ---------- Dar ---------- ---------- ---------- ---------- ---------- Daq ---------- ---------- ---------- ---------- ---------- Dap ---------- ---------- ---------- ---------- ---------- Daa ---------- ---------- ---------- ---------- ---------- Dae ---------- ---------- ---------- ---------- ---------- Dan ---------- ---------- ---------- ---------- ---------- L1orl .......... .........t .......... .......... .......... Musmht ---------- ---------- ---------- ---------- ---------- Dad ---------- ---------- ---------- ---------- ---------- Af081111 .......... .........t .......... .......... .......... Af081109 .......... .........t .......... .......... .......... L1spa .......... .........t .......... .......... .......... Tfnode1 .......... .........t .......... .......... .......... [ 2600 ' ' ' ' ] L1mdA2 GCCTGGACAG ATGTTATACA GACACTAAGA GAACACAAAT GCCAGCCCAG Dat ---------- ---------- ---------- ---------- ---------- Af081112 .......... .......... .......... .........c tg........ Af081107 .......... .......... .......... .........c tg........ Ac5938b .......... .......... .......... .........c tg........ Tfnode2 .......... .......... .......... .........c tg........ Ac4405lr ---------- ---------- ---------- ---------- ---------- Af081113 .......... .......... .......... .........c tg........ Af081106 .......... .......... .......... .........c tg........ D2 ---------- ---------- ---------- ---------- ---------- D3 ---------- ---------- ---------- ---------- ---------- L1md4 ---------- ---------- ---------- ---------- ---------- Dab ---------- ---------- ---------- ---------- ---------- Dar ---------- ---------- ---------- ---------- ---------- Daq ---------- ---------- ---------- ---------- ---------- Dap ---------- ---------- ---------- ---------- ---------- Daa ---------- ---------- ---------- ---------- ---------- Dae ---------- ---------- ---------- ---------- ---------- Dan ---------- ---------- ---------- ---------- ---------- L1orl .......... .......... .......... .........c tg........ Musmht ---------- ---------- ---------- ---------- ---------- Dad ---------- ---------- ---------- ---------- ---------- Af081111 .......... .......... .......... .........c tg........ Af081109 .......... .......... .......... .........c tg........ L1spa .......... .......... .......... .........c tg........ Tfnode1 .......... .......... .......... .........c tg........ [ 2650 ' ' ' ' ] L1mdA2 GCTACTATAC CCGGCCAAAC TCTCAATTAC CATAGATGGA GAAACCAAAG Dat ---------- ---------- ---------- ---------- ---------- Af081112 .......... ..a....... .........t ......g... .......... Af081107 .......... ..a....... .........t ......g... .......... Ac5938b ......t... ..a....... .........t ......g... .......... Tfnode2 .......... ..a....... .........t ......g... .......... Ac4405lr ---------- ---------- ---------- ---------- ---------- Af081113 .......... ..a....... .........t ......g... .......... Af081106 .......... ..a....... .........t ......g... .......... D2 ---------- ---------- ---------- ---------- ---------- D3 ---------- ---------- ---------- ---------- ---------- L1md4 ---------- ---------- ---------- ---------- ---------- Dab ---------- ---------- ---------- ---------- ---------- Dar ---------- ---------- ---------- ---------- ---------- Daq ---------- ---------- ---------- ---------- ---------- Dap ---------- ---------- ---------- ---------- ---------- Daa ---------- ---------- ---------- ---------- ---------- Dae ---------- ---------- ---------- ---------- ---------- Dan ---------- ---------- ---------- ---------- ---------- L1orl .......... ..a....... .........t ......g... .......... Musmht ---------- ---------- ---------- ---------- ---------- Dad ---------- ---------- ---------- ---------- ---------- Af081111 .......... ..a....... .........t ......g... .......... Af081109 .......... ..a....... .........t ......g... .......... L1spa .......... ..a....... .........t ......g... .......... Tfnode1 .......... ..a....... .........t ......g... .......... [ 2700 ' ' ' ' ] L1mdA2 TATTCCACGA CAAAACCAAG TTCACACAAT ATCTTTCCAC GAATCCAGCC Dat ---------- ---------- ---------- ---------- ---------- Af081112 .......... .........a .....g..t. ....c..... .......... Af081107 .......... .........a .....g..t. ....c..... .......... Ac5938b .......... .........a .....g..t. ....c..... .......... Tfnode2 .......... .........a .....g..t. ....c..... .......... Ac4405lr ---------- ---------- ---------- ---------- ---------- Af081113 .......... .........a .....g..t. ....c..... .......... Af081106 .......... .........a .....g..t. ....c..... .......... D2 ---------- ---------- ---------- ---------- ---------- D3 ---------- ---------- ---------- ---------- ---------- L1md4 ---------- ---------- ---------- ---------- ---------- Dab ---------- ---------- ---------- ---------- ---------- Dar ---------- ---------- ---------- ---------- ---------- Daq ---------- ---------- ---------- ---------- ---------- Dap ---------- ---------- ---------- ---------- ---------- Daa ---------- ---------- ---------- ---------- ---------- Dae ---------- ---------- ---------- ---------- ---------- Dan ---------- ---------- ---------- ---------- ---------- L1orl .......... .........a .....g..t. ....c..... .......... Musmht ---------- ---------- ---------- ---------- ---------- Dad ---------- ---------- ---------- ---------- ---------- Af081111 .......... .........a .....g..t. ....c..... .......... Af081109 .......... .........a .....g..t. ....c..... .......... L1spa .......... .........a .....g..t. ....c..... .......... Tfnode1 .......... .........a .....g..t. ....c..... .......... [ 2750 ' ' ' ' ] L1mdA2 CTTCAAAGGA TAATAACAGA AAAGAAACAA TACAAGGACG GAAATCACGC Dat ---------- ---------- ---------- ---------- ---------- Af081112 .......... .......... ...a..c... ......a... .g..ca.... Af081107 .......... .g........ ...a..c... ......a... .g..ca.... Ac5938b .......... .......... ...a..c... ......a... .g..ca.... Tfnode2 .......... .......... ...a..c... ......a... .g..ca.... Ac4405lr ---------- ---------- ---------- ---------- ---------- Af081113 .......... .......... ...a..c... ......a... .g..ca.... Af081106 .......... .......... ...a..c... ......a... .g..ca.... D2 ---------- ---------- ---------- ---------- ---------- D3 ---------- ---------- ---------- ---------- ---------- L1md4 ---------- ---------- ---------- ---------- ---------- Dab ---------- ---------- ---------- ---------- ---------- Dar ---------- ---------- ---------- ---------- ---------- Daq ---------- ---------- ---------- ---------- ---------- Dap ---------- ---------- ---------- ---------- ---------- Daa ---------- ---------- ---------- ---------- ---------- Dae ---------- ---------- ---------- ---------- ---------- Dan ---------- ---------- ---------- ---------- ---------- L1orl .......... .......... ...a..c... ......a... .g..ca.... Musmht ---------- ---------- ---------- ---------- ---------- Dad ---------- ---------- ---------- ---------- ---------- Af081111 .......... .......... ...a..c... ......a... .g..ca.... Af081109 .......... .......... ...a..c... ......a... .g..ca.... L1spa .......... .......... ...a..c... ......a... .g..ca.... Tfnode1 .......... .......... ...a..c... ......a... .g..ca.... [ 2800 ' ' ' ' ] L1mdA2 CCTAGAACAA CCAAGAAAGT AATCATTCAA CAAACCAAAA AGAAGACAGC Dat ---------- ---------- ---------- ---------- ---------- Af081112 .......a.. a......g.. ....cc.... ......t... .......... Af081107 .......a.. a......g.. ....cc.... ......t... .......... Ac5938b .......a.. a......g.. ....cc.... ......t... .......... Tfnode2 .......a.. a......g.. ....cc.... ......t... .......... Ac4405lr ---------- ---------- ---------- ---------- ---------- Af081113 .......a.. a......g.. ....cc.... ......t... .......... Af081106 .......a.. a......g.. ....cc.... ......t... .......... D2 ---------- ---------- ---------- ---------- ---------- D3 ---------- ---------- ---------- ---------- ---------- L1md4 ---------- ---------- ---------- ---------- ---------- Dab ---------- ---------- ---------- ---------- ---------- Dar ---------- ---------- ---------- ---------- ---------- Daq ---------- ---------- ---------- ---------- ---------- Dap ---------- ---------- ---------- ---------- ---------- Daa ---------- ---------- ---------- ---------- ---------- Dae ---------- ---------- ---------- ---------- ---------- Dan ---------- ---------- ---------- ---------- ---------- L1orl .......a.. a......g.. ....cc.... ......t... .......... Musmht ---------- ---------- ---------- ---------- ---------- Dad ---------- ---------- ---------- ---------- ---------- Af081111 .......a.. a......g.. ....cc.... ......t... .......... Af081109 .......a.. a......g.. ....cc.... ......t... .......... L1spa .......a.. a......g.. ....cc.... ......t... .......... Tfnode1 .......a.. a......g.. ....cc.... ......t... .......... [ 2850 ' ' ' ] L1mdA2 CACAAGAACA GAATGCCAAC TCTAACAACA AAAATAAAAG GGAGCAACAA Dat ---------- ---------- ---------- ---------- ---------- Af081112 .......... ........c. .t.......t .......c.. .a........ Af081107 .......... ........c. .t.......t .......c.. .a........ Ac5938b .......... ........c. .t.......t .......c.. .a........ Tfnode2 .......... ........c. .t.......t .......c.. .a........ Ac4405lr ---------- ---------- ---------- ---------- ---------- Af081113 .......... ........c. .t.......t .......c.. .a........ Af081106 .......... ........c. .t.......t .......c.. .a........ D2 ---------- ---------- ---------- ---------- ---------- D3 ---------- ---------- ---------- ---------- ---------- L1md4 ---------- ---------- ---------- ---------- ---------- Dab ---------- ---------- ---------- ---------- ---------- Dar ---------- ---------- ---------- ---------- ---------- Daq ---------- ---------- ---------- ---------- ---------- Dap ---------- ---------- ---------- ---------- ---------- Daa ---------- ---------- ---------- ---------- ---------- Dae ---------- ---------- ---------- ---------- ---------- Dan ---------- ---------- ---------- ---------- ---------- L1orl .......... ........c. .t.......t .......c.. .a........ Musmht ---------- ---------- ---------- ---------- ---------- Dad ---------- ---------- ---------- ---------- ---------- Af081111 .......... ........c. .t.......t .......c.. .a........ Af081109 .......... ........c. .t.......t .......c.. .a........ L1spa .......... ........c. .t.......t .......c.. .a........ Tfnode1 .......... ........c. .t.......t .......c.. .a........ [ 2900 ' ' ' ] L1mdA2 TTACTTTTCC TTAATATCTC TTAATATCAA TGGACTCAAT TCCCCAATAA Dat ---------- ---------- ---------- ---------- ---------- Af081112 .......... .......... ....c..... ...t.....c ..g....... Af081107 .......... .......... ....c..... ...t.....c ..g....... Ac5938b .......... .......... ....c..... ...t.....c ..g....... Tfnode2 .......... .......... ....c..... ...t.....c ..g....... Ac4405lr ---------- ---------- ---------- ---------- ---------- Af081113 .......... .......... ....c..... ...t.....c ..g....... Af081106 .......... .......... ....c..... ...t.....c ..g....... D2 ---------- ---------- ---------- ---------- ---------- D3 ---------- ---------- ---------- ---------- ---------- L1md4 ---------- ---------- ---------- ---------- ---------- Dab ---------- ---------- ---------- ---------- ---------- Dar ---------- ---------- ---------- ---------- ---------- Daq ---------- ---------- ---------- ---------- ---------- Dap ---------- ---------- ---------- ---------- ---------- Daa ---------- ---------- ---------- ---------- ---------- Dae ---------- ---------- ---------- ---------- ---------- Dan ---------- ---------- ---------- ---------- ---------- L1orl .......... .......... ....c..... ...t.....c ..g....... Musmht ---------- ---------- ---------- ---------- ---------- Dad ---------- ---------- ---------- ---------- ---------- Af081111 .......... .......... ....c..... ...t.....c ..g....... Af081109 .......... .......... ....c..... ...t.....c ..g....... L1spa .......... .......... ....c..... ...t.....c ..g....... Tfnode1 .......... .......... ....c..... ...t.....c ..g....... [ 2950 ' ' ' ' ] L1mdA2 AAAGACATAG ACTAACAGAC TGGCTACACA AACAGGACCC AACATTCTGC Dat ---------- ---------- ---------- ---------- ---------- Af081112 .......... .......a.. .......... ....a..... ......t... Af081107 .......... .......a.. .......... ....a..... ......t... Ac5938b .......... .......a.. .......... ....a..... ......t... Tfnode2 .......... .......a.. .......... ....a..... ......t... Ac4405lr ---------- ---------- ---------- ---------- ---------- Af081113 .......... .......a.. .......... ....a..... ......t... Af081106 .......... .......a.. .......... ....a..... ......t... D2 ---------- ---------- ---------- ---------- ---------- D3 ---------- ---------- ---------- ---------- ---------- L1md4 ---------- ---------- ---------- ---------- ---------- Dab ---------- ---------- ---------- ---------- ---------- Dar ---------- ---------- ---------- ---------- ---------- Daq ---------- ---------- ---------- ---------- ---------- Dap ---------- ---------- ---------- ---------- ---------- Daa ---------- ---------- ---------- ---------- ---------- Dae ---------- ---------- ---------- ---------- ---------- Dan ---------- ---------- ---------- ---------- ---------- L1orl .......... .......a.. .......... ....a..... ......t... Musmht ---------- ---------- ---------- ---------- ---------- Dad ---------- ---------- ---------- ---------- ---------- Af081111 .......... .......a.. .......... ....a..... ......t... Af081109 .......... .......a.. .......... ....a..... ......t... L1spa .......... .......a.. .......... ....a..... ......t... Tfnode1 .......... .......a.. .......... ....a..... ......t... [ 3000 ' ' ' ' ] L1mdA2 TGCTTACAGG AAACCCATCT CAGGGAAAAA GACAGACACT ACCTCAGAGT Dat ---------- ---------- ---------- ---------- ---------- Af081112 .......... ....t..... ...a...... ..t....... ........a. Af081107 .......... ....t..... ...a...... ..t....... ........a. Ac5938b .......... ....t..... ...a...... ..t....... ........a. Tfnode2 .......... ....t..... ...a...... ..t....... ........a. Ac4405lr ---------- ---------- ---------- ---------- ---------- Af081113 .......... ....t..... ...a...... ..t....... ........a. Af081106 .......... ....t..... ...a...... ..t....... ........a. D2 ---------- ---------- ---------- ---------- ---------- D3 ---------- ---------- ---------- ---------- ---------- L1md4 ---------- ---------- ---------- ---------- ---------- Dab ---------- ---------- ---------- ---------- ---------- Dar ---------- ---------- ---------- ---------- ---------- Daq ---------- ---------- ---------- ---------- ---------- Dap ---------- ---------- ---------- ---------- ---------- Daa ---------- ---------- ---------- ---------- ---------- Dae ---------- ---------- ---------- ---------- ---------- Dan ---------- ---------- ---------- ---------- ---------- L1orl .......... ....t..... ...a...... ..t....... ........a. Musmht ---------- ---------- ---------- ---------- ---------- Dad ---------- ---------- ---------- ---------- ---------- Af081111 .......... ....t..... ...a...... ..t....... ........a. Af081109 .......... ....t..... ...a...... ..t....... ........a. L1spa .......... ....t..... ...a...... ..t....... ........a. Tfnode1 .......... ....t..... ...a...... ..t....... ........a. [ 3050 ' ' ' ' ] L1mdA2 GAAAGGCTGG AAAACAATTT TCCAAGCAAA TGGACTGAAG AAACAAGCTG Dat ---------- ---------- ---------- ---------- ---------- Af081112 .......... .......... .......... ...ta..... ........a. Af081107 .......... .......... .......... ...ta..... ........a. Ac5938b .......... .......... .......... ...ta..... ........a. Tfnode2 .......... .......... .......... ...ta..... ........a. Ac4405lr ---------- ---------- ---------- ---------- ---------- Af081113 .......... .......... .......... ...ta..... ........a. Af081106 .......... .......... .......... ...ta..... ........a. D2 ---------- ---------- ---------- ---------- ---------- D3 ---------- ---------- ---------- ---------- ---------- L1md4 ---------- ---------- ---------- ---------- ---------- Dab ---------- ---------- ---------- ---------- ---------- Dar ---------- ---------- ---------- ---------- ---------- Daq ---------- ---------- ---------- ---------- ---------- Dap ---------- ---------- ---------- ---------- ---------- Daa ---------- ---------- ---------- ---------- ---------- Dae ---------- ---------- ---------- ---------- ---------- Dan ---------- ---------- ---------- ---------- ---------- L1orl .......... .......... .......... ...ta..... ........a. Musmht ---------- ---------- ---------- ---------- ---------- Dad ---------- ---------- ---------- ---------- ---------- Af081111 .......... .......... .......... ...ta..... ........a. Af081109 .......... .......... .......... ...ta..... ........a. L1spa .......... .......... .......... ...ta..... ........a. Tfnode1 .......... .......... .......... ...ta..... ........a. [ 3100 ' ' ' ' ] L1mdA2 GAGTAGCCAT TTTAATATCG GATAAAATCG ACTTCCAACC CAAAGTTATC Dat ---------- ---------- ---------- ---------- ---------- Af081112 .......... cc.......t .....g..t. .......... ......c... Af081107 .......... cc.......t .....g..t. .......... ......c... Ac5938b .......... cc.......t .....g..t. .......... ......c... Tfnode2 .......... cc.......t .....g..t. .......... ......c... Ac4405lr ---------- ---------- ---------- ---------- ---------- Af081113 .......... cc.......t .....g..t. .......... ......c... Af081106 .......... cc.......t .....g..t. .......... ......c... D2 ---------- ---------- ---------- ---------- ---------- D3 ---------- ---------- ---------- ---------- ---------- L1md4 ---------- ---------- ---------- ---------- ---------- Dab ---------- ---------- ---------- ---------- ---------- Dar ---------- ---------- ---------- ---------- ---------- Daq ---------- ---------- ---------- ---------- ---------- Dap ---------- ---------- ---------- ---------- ---------- Daa ---------- ---------- ---------- ---------- ---------- Dae ---------- ---------- ---------- ---------- ---------- Dan ---------- ---------- ---------- ---------- ---------- L1orl .......... cc.......t .....g..t. .......... ......c... Musmht ---------- ---------- ---------- ---------- ---------- Dad ---------- ---------- ---------- ---------- ---------- Af081111 .......... cc.......t .....g..t. .......... ......c... Af081109 .......... cc.......t .....g..t. .......... ......c... L1spa .......... cc.......t .....g..t. .......... ......c... Tfnode1 .......... cc.......t .....g..t. .......... ......c... [ 3150 ' ' ' ' ] L1mdA2 AAAAAAGACA AGGAGGGACA CTTCATACTC ATCAAAGGTA AAATCCTCCA Dat ---------- ---------- ---------- ---------- ---------- Af081112 .......... .......... ......t... .......... .......... Af081107 .......... .......... ......t... .......... .......... Ac5938b .......... .......... ......t... .......... .......... Tfnode2 .......... .......... ......t... .......... .......... Ac4405lr ---------- ---------- ---------- ---------- ---------- Af081113 .......... .......... ......t... .......... .......... Af081106 .......... .......... ......t... .......... .......... D2 ---------- ---------- ---------- ---------- ---------- D3 ---------- ---------- ---------- ---------- ---------- L1md4 ---------- ---------- ---------- ---------- ---------- Dab ---------- ---------- ---------- ---------- ---------- Dar ---------- ---------- ---------- ---------- ---------- Daq ---------- ---------- ---------- ---------- ---------- Dap ---------- ---------- ---------- ---------- ---------- Daa ---------- ---------- ---------- ---------- ---------- Dae ---------- ---------- ---------- ---------- ---------- Dan ---------- ---------- ---------- ---------- ---------- L1orl .......... .......... ......t... .......... .......... Musmht ---------- ---------- ---------- ---------- ---------- Dad ---------- ---------- ---------- ---------- ---------- Af081111 .......... .......... ......t... .......... .......... Af081109 .......... .......... ......t... .......... .......... L1spa .......... .......... ......t... .......... .......... Tfnode1 .......... .......... ......t... .......... .......... [ 3200 ' ' ' ' ] L1mdA2 AGAGGAACTC TCAATTCTGA ATATCTACGC ACCAAATGCA AGGGCAGCCA Dat ---------- ---------- ---------- ---------- ---------- Af081112 .......... .......... .......t.. t......a.. ..a....... Af081107 .......... .......... .......t.. t......a.. ..a....... Ac5938b .......... .......... .......t.. t......a.. ..a...a... Tfnode2 .......... .......... .......t.. t......a.. ..a....... Ac4405lr ---------- ---------- ---------- ---------- ---------- Af081113 .......... .......... .......t.. t......a.. ..a....... Af081106 .......... .......... .......t.. t......a.. ..a....... D2 ---------- ---------- ---------- ---------- ---------- D3 ---------- ---------- ---------- ---------- ---------- L1md4 ---------- ---------- ---------- ---------- ---------- Dab ---------- ---------- ---------- ---------- ---------- Dar ---------- ---------- ---------- ---------- ---------- Daq ---------- ---------- ---------- ---------- ---------- Dap ---------- ---------- ---------- ---------- ---------- Daa ---------- ---------- ---------- ---------- ---------- Dae ---------- ---------- ---------- ---------- ---------- Dan ---------- ---------- ---------- ---------- ---------- L1orl .......... .......... .......t.. t......aa. ..a....... Musmht ---------- ---------- ---------- ---------- ---------- Dad ---------- ---------- ---------- ---------- ---------- Af081111 .......... .......... .......t.. t......a.. ..a....... Af081109 .......... .......... .......t.. t......a.. ..a....... L1spa .......... .......... .......t.. t......a.. ..a....... Tfnode1 .......... .......... .......t.. t......a.. ..a....... [ 3250 ' ' ' ' ] L1mdA2 CATTCATTAG AGACACTTTA GTAAAGCTCA AAGCATACAT TGCACCTCAC Dat ---------- ---------- ---------- ---------- ---------- Af081112 ......c..a ...a...... .......... .....c.... ...g...... Af081107 ......c..a ...a...... .......... .....c.... ...g...... Ac5938b ......c..a ...a...... .......... .....c.... ...g...... Tfnode2 ......c..a ...a...... .......... .....c.... ...g...... Ac4405lr ---------- ---------- ---------- ---------- ---------- Af081113 ......c..a ...a...... .......... .....c.... ...g...... Af081106 ......c..a ...a...... .......... .....c.... ...g...... D2 ---------- ---------- ---------- ---------- ---------- D3 ---------- ---------- ---------- ---------- ---------- L1md4 ---------- ---------- ---------- ---------- ---------- Dab ---------- ---------- ---------- ---------- ---------- Dar ---------- ---------- ---------- ---------- ---------- Daq ---------- ---------- ---------- ---------- ---------- Dap ---------- ---------- ---------- ---------- ---------- Daa ---------- ---------- ---------- ---------- ---------- Dae ---------- ---------- ---------- ---------- ---------- Dan ---------- ---------- ---------- ---------- ---------- L1orl ......c..a ...a...... .......... .....c.... ...g...... Musmht ---------- ---------- ---------- ---------- ---------- Dad ---------- ---------- ---------- ---------- ---------- Af081111 ......c..a ...a...... .......... .....c.... ...g...... Af081109 ......c..a ...a...... .......... .....c.... ...g...... L1spa ......c..a ...a...... .......... .....c.... ...g...... Tfnode1 ......c..a ...a...... .......... .....c.... ...g...... [ 3300 ' ' ' ' ] L1mdA2 ACAATAATAG TGGGAGACTT CAACACACCA CTTTCTTCAA AGGACAGATC Dat ---------- ---------- ---------- ---------- ---------- Af081112 .......... .......... .......... .....ac... t......... Af081107 .......... .......... .......... .....ac... t......... Ac5938b .......... .......... .......... .....ac... t......... Tfnode2 .......... .......... .......... .....ac... t......... Ac4405lr ---------- ---------- ---------- ---------- ---------- Af081113 .......... .......... .......... .....ac... t......... Af081106 .......... .......... .......... .....ac... t......... D2 ---------- ---------- ---------- ---------- ---------- D3 ---------- ---------- ---------- ---------- ---------- L1md4 ---------- ---------- ---------- ---------- ---------- Dab ---------- ---------- ---------- ---------- ---------- Dar ---------- ---------- ---------- ---------- ---------- Daq ---------- ---------- ---------- ---------- ---------- Dap ---------- ---------- ---------- ---------- ---------- Daa ---------- ---------- ---------- ---------- ---------- Dae ---------- ---------- ---------- ---------- ---------- Dan ---------- ---------- ---------- ---------- ---------- L1orl .......... .......... .......... .....ac... t......... Musmht ---------- ---------- ---------- ---------- ---------- Dad ---------- ---------- ---------- ---------- ---------- Af081111 .......... .......... .......... .....ac... t......... Af081109 .......... .......... .......... .....ac... t......... L1spa .......... .......... .......... .....ac... t......... Tfnode1 .......... .......... .......... .....ac... t......... [ 3350 ' ' ' ' ] L1mdA2 GTGGAAACAG AAACTAAACA GGGACACAGT GAAACTAACA GAAGTTATGA Dat ---------- ---------- ---------- ---------- ---------- Af081112 a......... .......... ........c. .......... .....g.... Af081107 a......... .......... ........c. .......... .....g.... Ac5938b a......... .......... ........c. .......... .....g.... Tfnode2 a......... .......... ........c. .......... .....g.... Ac4405lr ---------- ---------- ---------- ---------- ---------- Af081113 a......... .......... ........c. .......... .....g.... Af081106 a......... .......... ........c. .......... .....g.... D2 ---------- ---------- ---------- ---------- ---------- D3 ---------- ---------- ---------- ---------- ---------- L1md4 ---------- ---------- ---------- ---------- ---------- Dab ---------- ---------- ---------- ---------- ---------- Dar ---------- ---------- ---------- ---------- ---------- Daq ---------- ---------- ---------- ---------- ---------- Dap ---------- ---------- ---------- ---------- ---------- Daa ---------- ---------- ---------- ---------- ---------- Dae ---------- ---------- ---------- ---------- ---------- Dan ---------- ---------- ---------- ---------- ---------- L1orl a......... .......... ........c. .......... .....g.... Musmht ---------- ---------- ---------- ---------- ---------- Dad ---------- ---------- ---------- ---------- ---------- Af081111 a......... .......... ........c. .......... .....g.... Af081109 a......... .......... ........c. .......... .....g.... L1spa a......... .......... ........c. .......... .....g.... Tfnode1 a......... .......... ........c. .......... .....g.... [ 3400 ' ' ' ' ] L1mdA2 AACAAATGGA CCTGACAGAT ATCTACAGAA CATTTTATCC TAAAACAAAA Dat ---------- ---------- ---------- ---------- ---------- Af081112 .......... t......... .......... .......... .......... Af081107 .......... t......... .......... .......... .......... Ac5938b .......... t..a...... .......... .......... .......... Tfnode2 .......... t......... .......... .......c.. .......... Ac4405lr ---------- ---------- ---------- ---------- ---------- Af081113 .......... t......... .......... .......c.. .......... Af081106 .......... t......... .......... .......c.. .......... D2 ---------- ---------- ---------- ---------- ---------- D3 ---------- ---------- ---------- ---------- ---------- L1md4 ---------- ---------- ---------- ---------- ---------- Dab ---------- ---------- ---------- ---------- ---------- Dar ---------- ---------- ---------- ---------- ---------- Daq ---------- ---------- ---------- ---------- ---------- Dap ---------- ---------- ---------- ---------- ---------- Daa ---------- ---------- ---------- ---------- ---------- Dae ---------- ---------- ---------- ---------- ---------- Dan ---------- ---------- ---------- ---------- ---------- L1orl .......... t......... .......... ......tc.. .......... Musmht ---------- ---------- ---------- ---------- ---------- Dad ---------- ---------- ---------- ---------- ---------- Af081111 .......... t......... .......... .......... .......... Af081109 .......... t......... .......... .......c.. .......... L1spa .......... t......... .......... .......c.. .......... Tfnode1 .......... t......... .......... .......... .......... [ 3450 ' ' ' ' ] L1mdA2 GGATATACCT TCTTCTCAGC ACCTCACGGG ACCTTCTCCA AAATTGACCA Dat ---------- ---------- ---------- ---------- ---------- Af081112 .......... .......... ......t..t .......... .......... Af081107 .......... .......... ......t..t .......... .......... Ac5938b .......... .......... ......t..t .......... .......... Tfnode2 .......... .......... ......t..t .......... .......... Ac4405lr ---------- ---------- ---------- ---------- ---------- Af081113 .......... .......... ......t..t .......... .......... Af081106 .......... .......... ......t..t .......... .......... D2 ---------- ---------- ---------- ---------- ---------- D3 ---------- ---------- ---------- ---------- ---------- L1md4 ---------- ---------- ---------- ---------- ---------- Dab ---------- ---------- ---------- ---------- ---------- Dar ---------- ---------- ---------- ---------- ---------- Daq ---------- ---------- ---------- ---------- ---------- Dap ---------- ---------- ---------- ---------- ---------- Daa ---------- ---------- ---------- ---------- ---------- Dae ---------- ---------- ---------- ---------- ---------- Dan ---------- ---------- ---------- ---------- ---------- L1orl .......... .......... ......t..t .......... .......... Musmht ---------- ---------- ---------- ---------- ---------- Dad ---------- ---------- ---------- ---------- ---------- Af081111 .......... .......... ......t..t .......... .......... Af081109 .......... .......... ......t..t .......... .......... L1spa .......... .......... ......t..t .......... .......... Tfnode1 .......... .......... ......t..t .......... .......... [ 3500 ' ' ' ' ] L1mdA2 TATAATTGGT CACAAAACAG GCCTCAATAG ATACAAAAAT ATTGAAATTG Dat ---------- ---------- ---------- ---------- ---------- Af081112 c.....a... ......t... .......c.. ..t....... .......... Af081107 c.....a... ......t... .......c.. ..t....... .......... Ac5938b c.....a... ......t... .......c.. ..t....... .......... Tfnode2 c.....a... ......t... .......c.. ..t....... .......... Ac4405lr ---------- ---------- ---------- ---------- ---------- Af081113 c.....a... ......t... .......c.. ..t....... .......... Af081106 c.....a... ......t... .......c.. ..t....... .......... D2 ---------- ---------- ---------- ---------- ---------- D3 ---------- ---------- ---------- ---------- ---------- L1md4 ---------- ---------- ---------- ---------- ---------- Dab ---------- ---------- ---------- ---------- ---------- Dar ---------- ---------- ---------- ---------- ---------- Daq ---------- ---------- ---------- ---------- ---------- Dap ---------- ---------- ---------- ---------- ---------- Daa ---------- ---------- ---------- ---------- ---------- Dae ---------- ---------- ---------- ---------- ---------- Dan ---------- ---------- ---------- ---------- ---------- L1orl c.....a... ......t... .......c.. ..t....... .......... Musmht ---------- ---------- ---------- ---------- ---------- Dad ---------- ---------- ---------- ---------- ---------- Af081111 c.....a... ......t... .......c.. ..t....... .......... Af081109 c.....a... ......t... .......c.. ..ta...... .......... L1spa c.....a... ......t... .......c.. ..ta...... .......... Tfnode1 c.....a... ......t... .......c.. ..t....... .......... [ 3550 ' ' ' ' ] L1mdA2 TCCCATGTAT CCTATCAGAC CACCATGGCC TAAGACTGAT CTTCAATAAC Dat ---------- ---------- ---------- ---------- ---------- Af081112 .......... .........t .......ca. ....g..... .......... Af081107 .......... .........t ......aca. ....g..... .......... Ac5938b .......... .........t .......ca. ....g..... .......... Tfnode2 .......... .........t .......ca. ....g..... .......... Ac4405lr ---------- ---------- ---------- ---------- ---------- Af081113 .......... .........t .......ca. ....g..... .......... Af081106 .......... .........t .......ca. ....g..... .......... D2 ---------- ---------- ---------- ---------- ---------- D3 ---------- ---------- ---------- ---------- ---------- L1md4 ---------- ---------- ---------- ---------- ---------- Dab ---------- ---------- ---------- ---------- ---------- Dar ---------- ---------- ---------- ---------- ---------- Daq ---------- ---------- ---------- ---------- ---------- Dap ---------- ---------- ---------- ---------- ---------- Daa ---------- ---------- ---------- ---------- ---------- Dae ---------- ---------- ---------- ---------- ---------- Dan ---------- ---------- ---------- ---------- ---------- L1orl .......... .........t .......ca. ....g..... .......... Musmht ---------- ---------- ---------- ---------- ---------- Dad ---------- ---------- ---------- ---------- ---------- Af081111 .......... .........t .......ca. ....g..... .......... Af081109 .......... .........t .......ca. ....g..... .......... L1spa .......... .........t .......ca. ....g..... .......... Tfnode1 .......... .........t .......ca. ....g..... .......... [ 3600 ' ' ' ' ] L1mdA2 AACATAAATA ATGGAAAGCC AACATTCACG TGGAAACTGA ATAACACTCT Dat ---------- ---------- ---------- ---------- ---------- Af081112 ..a....... .ca....... .........a .......... .c........ Af081107 ..a....... .ca....... .........a .......... .c........ Ac5938b ..a....... .ca....... .........a .......... .c........ Tfnode2 ..a....... .ca....... .........a .......... .c........ Ac4405lr ---------- ---------- ---------- ---------- ---------- Af081113 ..a....... .ca....... .........a .......... .c........ Af081106 ..a....... .ca....... .........a .......... .c........ D2 ---------- ---------- ---------- ---------- ---------- D3 ---------- ---------- ---------- ---------- ---------- L1md4 ---------- ---------- ---------- ---------- ---------- Dab ---------- ---------- ---------- ---------- ---------- Dar ---------- ---------- ---------- ---------- ---------- Daq ---------- ---------- ---------- ---------- ---------- Dap ---------- ---------- ---------- ---------- ---------- Daa ---------- ---------- ---------- ---------- ---------- Dae ---------- ---------- ---------- ---------- ---------- Dan ---------- ---------- ---------- ---------- ---------- L1orl ..a....... .ca....... .........a .......... .c........ Musmht ---------- ---------- ---------- ---------- ---------- Dad ---------- ---------- ---------- ---------- ---------- Af081111 ..a....... .ca....... .........a .......... .c........ Af081109 ..a....... .ca....... .........a .......... .c........ L1spa ..a....... .ca....... .........a .......... .c........ Tfnode1 ..a....... .ca....... .........a .......... .c........ [ 3650 ' ' ' ' ] L1mdA2 TCTCAATGAT ACCTTGGTCA AGGAAGGAAT AAAGAAAGAA ATTAAAGACT Dat ---------- ---------- ---------- ---------- ---------- Af081112 .......... .......... .......... .......... .......... Af081107 .......... .......... .......... .......... .......... Ac5938b .......... .......... .......... .......... .......... Tfnode2 .......... .......... .......... .......... .......... Ac4405lr ---------- ---------- ---------- ---------- ---------- Af081113 .......... .......... .......... .......... .......... Af081106 .......... .......... .......... .......... .......... D2 ---------- ---------- ---------- ---------- ---------- D3 ---------- ---------- ---------- ---------- ---------- L1md4 ---------- ---------- ---------- ---------- ---------- Dab ---------- ---------- ---------- ---------- ---------- Dar ---------- ---------- ---------- ---------- ---------- Daq ---------- ---------- ---------- ---------- ---------- Dap ---------- ---------- ---------- ---------- ---------- Daa ---------- ---------- ---------- ---------- ---------- Dae ---------- ---------- ---------- ---------- ---------- Dan ---------- ---------- ---------- ---------- ---------- L1orl .......... .......... .......... .......... .......... Musmht ---------- ---------- ---------- ---------- ---------- Dad ---------- ---------- ---------- ---------- ---------- Af081111 .......... .......... .......... .......... .......... Af081109 .......... .......... .......... .......... .......... L1spa .......... .......... .......... .......... .......... Tfnode1 .......... .......... .......... .......... .......... [ 3700 ' ' ' ' ] L1mdA2 TTTTAGAGTT TAATGAAAAT GAAGCCACAA CGTACCCAAA CCTATGGGAC Dat ---------- ---------- ---------- ---------- ---------- Af081112 .......... .......... .......... .......... ...t...... Af081107 .......... .......... .......... .......... ...t...... Ac5938b .......... .......... .......... .......... ...t...... Tfnode2 .......... .......... .......... .......... ...t...... Ac4405lr ---------- ---------- ---------- ---------- ---------- Af081113 .......... .......... .......... .......... ...t...... Af081106 .......... .......... .......... .......... ...t...... D2 ---------- ---------- ---------- ---------- ---------- D3 ---------- ---------- ---------- ---------- ---------- L1md4 ---------- ---------- ---------- ---------- ---------- Dab ---------- ---------- ---------- ---------- ---------- Dar ---------- ---------- ---------- ---------- ---------- Daq ---------- ---------- ---------- ---------- ---------- Dap ---------- ---------- ---------- ---------- ---------- Daa ---------- ---------- ---------- ---------- ---------- Dae ---------- ---------- ---------- ---------- ---------- Dan ---------- ---------- ---------- ---------- ---------- L1orl .......... .......... .......... .......... ...t...... Musmht ---------- ---------- ---------- ---------- ---------- Dad ---------- ---------- ---------- ---------- ---------- Af081111 .......... .......... .......... ......t... ...t...... Af081109 .......... .......... .......... .......... ...t...... L1spa .......... .......... .......... .......... ...t...... Tfnode1 .......... .......... .......... .......... ...t...... [ 3750 ' ' ' ' ] L1mdA2 ACAATGAAAG CATTTCTAAG AGGGAAACTC ATAGCGCTGA GTGCCTCCAA Dat ---------- ---------- ---------- ---------- ---------- Af081112 .......... .......... .......... .....ta... ......t... Af081107 .......... .......... .......... .....t.... .........t Ac5938b .......... .......... .......... .....ta... ......t... Tfnode2 .......... .......... .......... .....ta... ......t... Ac4405lr ---------- ---------- ---------- ---------- ---------- Af081113 .......... .......... .......... .....ta... ......t... Af081106 .......... .......... .......... .....ta... ......t... D2 ---------- ---------- ---------- ---------- ---------- D3 ---------- ---------- ---------- ---------- ---------- L1md4 ---------- ---------- ---------- ---------- ---------- Dab ---------- ---------- ---------- ---------- ---------- Dar ---------- ---------- ---------- ---------- ---------- Daq ---------- ---------- ---------- ---------- ---------- Dap ---------- ---------- ---------- ---------- ---------- Daa ---------- ---------- ---------- ---------- ---------- Dae ---------- ---------- ---------- ---------- ---------- Dan ---------- ---------- ---------- ---------- ---------- L1orl .......... .......... .......... .....ta... ......t... Musmht ---------- ---------- ---------- ---------- ---------- Dad ---------- ---------- ---------- ---------- ---------- Af081111 .......... .......... .......... .....ta... ......t... Af081109 .......... .......... .......... .....ta... ......t... L1spa .......... .......... .......... .....ta... ......t... Tfnode1 .......... .......... .......... .....ta... ......t... [ 3800 ' ' ' ' ] L1mdA2 GAAGAAACGG GAGACAGCAC ATACTAGCAG CTTGACAACA CATCTAAAAG Dat ---------- ---------- ---------- ---------- ---------- Af081112 ...a...... ....g..... .......... .......... .......... Af081107 t......... ....g..... .......... .......... .......... Ac5938b ...a...... ....g..... .......... .........- .......... Tfnode2 ...a...... ....g..... .......... .......... .......... Ac4405lr ---------- ---------- ---------- ---------- ---------- Af081113 ...a...... ....g..... .......... .......... .......... Af081106 ...a...... ....g..... .......... .......... .......... D2 ---------- ---------- ---------- ---------- ---------- D3 ---------- ---------- ---------- ---------- ---------- L1md4 ---------- ---------- ---------- ---------- ---------- Dab ---------- ---------- ---------- ---------- ---------- Dar ---------- ---------- ---------- ---------- ---------- Daq ---------- ---------- ---------- ---------- ---------- Dap ---------- ---------- ---------- ---------- ---------- Daa ---------- ---------- ---------- ---------- ---------- Dae ---------- ---------- ---------- ---------- ---------- Dan ---------- ---------- ---------- ---------- ---------- L1orl ...a...... ....g..... .......... .......... .......... Musmht ---------- ---------- ---------- ---------- ---------- Dad ---------- ---------- ---------- ---------- ---------- Af081111 ...a...... ....g..... .......... .......... .......... Af081109 ...a...... ....g..... .......... .......... .......... L1spa ...a...... ....g..... .......... .......... .......... Tfnode1 ...a...... ....g..... .......... .......... .......... [ 3850 ' ' ' ' ] L1mdA2 CCCTAGAAAA AAAGGAAGCA AATTCACCCA AGAGGAGTAG ACGGCAGGAA Dat ---------- ---------- ---------- ---------- ---------- Af081112 .t........ .......... .......... .......... .......... Af081107 .t........ .......... .......... .......... .......... Ac5938b .t........ .......... .......... .......... .......... Tfnode2 .t........ .......... .......... .......... .......... Ac4405lr ---------- ---------- ---------- ---------- ---------- Af081113 .t........ .......... .......... .......... .......... Af081106 .t........ .......... .......... .......... .......... D2 ---------- ---------- ---------- ---------- ---------- D3 ---------- ---------- ---------- ---------- ---------- L1md4 ---------- ---------- ---------- ---------- ---------- Dab ---------- ---------- ---------- ---------- ---------- Dar ---------- ---------- ---------- ---------- ---------- Daq ---------- ---------- ---------- ---------- ---------- Dap ---------- ---------- ---------- ---------- ---------- Daa ---------- ---------- ---------- ---------- ---------- Dae ---------- ---------- ---------- ---------- ---------- Dan ---------- ---------- ---------- ---------- ---------- L1orl .t........ .......... .......... .......... .......... Musmht ---------- ---------- ---------- ---------- ---------- Dad ---------- ---------- ---------- ---------- ---------- Af081111 .t........ .......... .......... .......... .......... Af081109 .t........ .......... .......... .......... .......... L1spa .t........ .......... .......... .......... .......... Tfnode1 .t........ .......... .......... .......... .......... [ 3900 ' ' ' ' ] L1mdA2 ATAATCAAAC TCAGGGGTGA AATCAACCAA GTGGAAACAA GAAGAACTAT Dat ---------- ---------- ---------- ---------- ---------- Af081112 .......... .......... .......... .......... .......... Af081107 .......... .......... .......... .......... .......... Ac5938b .......... .......... .......... .......... .......... Tfnode2 .......... .......... .......... .......... .......... Ac4405lr ---------- ---------- ---------- ---------- ---------- Af081113 .......... .......... .......... .......... .......... Af081106 .......... .......... .......... .......... .......... D2 ---------- ---------- ---------- ---------- ---------- D3 ---------- ---------- ---------- ---------- ---------- L1md4 ---------- ---------- ---------- ---------- ---------- Dab ---------- ---------- ---------- ---------- ---------- Dar ---------- ---------- ---------- ---------- ---------- Daq ---------- ---------- ---------- ---------- ---------- Dap ---------- ---------- ---------- ---------- ---------- Daa ---------- ---------- ---------- ---------- ---------- Dae ---------- ---------- ---------- ---------- ---------- Dan ---------- ---------- ---------- ---------- ---------- L1orl .......... .......... .......... .......... .......... Musmht ---------- ---------- ---------- ---------- ---------- Dad ---------- ---------- ---------- ---------- ---------- Af081111 .......... .......... .......... .......... .......... Af081109 .......... .......... .......... .......... .......... L1spa .......... .......... .......... .......... .......... Tfnode1 .......... .......... .......... .......... .......... [ 3950 ' ' ' ' ] L1mdA2 TCAAAGAATT AACCAAACGA GGAGTTGGTT CTTTGAGAAA ATCAACAAGA Dat ---------- ---------- ---------- ---------- ---------- Af081112 .......... .......... .......... .......... .......... Af081107 .......... .......... .......... .......... .......... Ac5938b .......... .......... .......... .......... .......... Tfnode2 .......... .......... .......... .......... .......... Ac4405lr ---------- ---------- ---------- ---------- ---------- Af081113 .......... .......... .......... .......... .......... Af081106 .......... .......... .......... .......... .......... D2 ---------- ---------- ---------- ---------- ---------- D3 ---------- ---------- ---------- ---------- ---------- L1md4 ---------- ---------- ---------- ---------- ---------- Dab ---------- ---------- ---------- ---------- ---------- Dar ---------- ---------- ---------- ---------- ---------- Daq ---------- ---------- ---------- ---------- ---------- Dap ---------- ---------- ---------- ---------- ---------- Daa ---------- ---------- ---------- ---------- ---------- Dae ---------- ---------- ---------- ---------- ---------- Dan ---------- ---------- ---------- ---------- ---------- L1orl .......... .......... .......... .......... .......... Musmht ---------- ---------- ---------- ---------- ---------- Dad ---------- ---------- ---------- ---------- ---------- Af081111 .......... .......... .......... .......... .......... Af081109 .......... .......... .......... .......... .......... L1spa .......... .......... .......... .......... .......... Tfnode1 .......... .......... .......... .......... .......... [ 4000 ' ' ' ' ] L1mdA2 TAGATAAACC CTTAGCTAGA CTCACTAAAG GGCACAGGGA CAAAATCCTA Dat ---------- ---------- ---------- ---------- ---------- Af081112 .......... ........c. .......... .......... .......... Af081107 .......... .......... .......... .......... .......... Ac5938b .......... .......... .......... .......... .......... Tfnode2 .......... .......... .......... .......... .......... Ac4405lr ---------- ---------- ---------- ---------- ---------- Af081113 .......... .......... .......... .......... .......... Af081106 .......... .......... .......... .......... .......... D2 ---------- ---------- ---------- ---------- ---------- D3 ---------- ---------- ---------- ---------- ---------- L1md4 ---------- ---------- ---------- ---------- ---------- Dab ---------- ---------- ---------- ---------- ---------- Dar ---------- ---------- ---------- ---------- ---------- Daq ---------- ---------- ---------- ---------- ---------- Dap ---------- ---------- ---------- ---------- ---------- Daa ---------- ---------- ---------- ---------- ---------- Dae ---------- ---------- ---------- ---------- ---------- Dan ---------- ---------- ---------- ---------- ---------- L1orl .......... .......... .......... .......... .......... Musmht ---------- ---------- ---------- ---------- ---------- Dad ---------- ---------- ---------- ---------- ---------- Af081111 .......... .......... .......... .......... .......... Af081109 .......... .......... .......... .......... .......... L1spa .......... .......... .......... .......... .......... Tfnode1 .......... .......... .......... .......... .......... [ 4050 ' ' ' ' ] L1mdA2 ATTAACAAAA TCAGAAATGA AAAGGGAGAC ATAACAACAG ATCCTGAAGA Dat ---------- ---------- ---------- ---------- ---------- Af081112 .......... ......c... .......... .......... .......... Af081107 .......... .......... .......... .......... .......... Ac5938b .......... .......... .......... .......... .......... Tfnode2 .......... .......... .......... .......... .......... Ac4405lr ---------- ---------- ---------- ---------- ---------- Af081113 .......... .......... .......... .......... .......... Af081106 .......... .......... .......... .......... .......... D2 ---------- ---------- ---------- ---------- ---------- D3 ---------- ---------- ---------- ---------- ---------- L1md4 ---------- ---------- ---------- ---------- ---------- Dab ---------- ---------- ---------- ---------- ---------- Dar ---------- ---------- ---------- ---------- ---------- Daq ---------- ---------- ---------- ---------- ---------- Dap ---------- ---------- ---------- ---------- ---------- Daa ---------- ---------- ---------- ---------- ---------- Dae ---------- ---------- ---------- ---------- ---------- Dan ---------- ---------- ---------- ---------- ---------- L1orl .......... .......... .......... .......... .......... Musmht ---------- ---------- ---------- ---------- ---------- Dad ---------- ---------- ---------- ---------- ---------- Af081111 .......... .......... .......... .......... .......... Af081109 .......... .......... .......... .......... .......... L1spa .......... .......... .......... .......... .......... Tfnode1 .......... .......... .......... .......... .......... [ 4100 ' ' ' ' ] L1mdA2 AATCCAAAAC ACCATCAGAT CCTTCTACAA AAGGCTATAC TCAACAAAAC Dat ---------- ---------- ---------- ---------- ---------- Af081112 .......... .......... .......... .......... .......... Af081107 .......... .......... .......... ...ct..... .......... Ac5938b .......... .......... .......... .......... .......... Tfnode2 .......... .......... .......... .......... .......... Ac4405lr ---------- ---------- ---------- ---------- ---------- Af081113 .......... .......... .......... .......... .......... Af081106 .......... .......... .......... .......... .......... D2 ---------- ---------- ---------- ---------- ---------- D3 ---------- ---------- ---------- ---------- ---------- L1md4 ---------- ---------- ---------- ---------- ---------- Dab ---------- ---------- ---------- ---------- ---------- Dar ---------- ---------- ---------- ---------- ---------- Daq ---------- ---------- ---------- ---------- ---------- Dap ---------- ---------- ---------- ---------- ---------- Daa ---------- ---------- ---------- ---------- ---------- Dae ---------- ---------- ---------- ---------- ---------- Dan ---------- ---------- ---------- ---------- ---------- L1orl .......... .......... .......... .......... .......... Musmht ---------- ---------- ---------- ---------- ---------- Dad ---------- ---------- ---------- ---------- ---------- Af081111 .......... .......... .......... .......... .......... Af081109 .......... .......... .......... .......... .......... L1spa .......... .......... .......... .......... .......... Tfnode1 .......... .......... .......... .......... .......... [ 4150 ' ' ' ' ] L1mdA2 TGGAAAACCT GGACGAAATG GACAAATTTC TGGACAGATA CCAGGTACCA Dat ---------- ---------- ---------- ---------- ---------- Af081112 .......... .......... .......... .......... .......... Af081107 .......... .......... .......... .......... .......... Ac5938b .......... .......... .......... .......... .......... Tfnode2 .......... .......... .......... .......... .......... Ac4405lr ---------- ---------- ---------- ---------- ---------- Af081113 .......... .......... .......... .......... .......... Af081106 .......... .......... .......... .......... .......... D2 ---------- ---------- ---------- ---------- ---------- D3 ---------- ---------- ---------- ---------- ---------- L1md4 ---------- ---------- ---------- ---------- ---------- Dab ---------- ---------- ---------- ---------- ---------- Dar ---------- ---------- ---------- ---------- ---------- Daq ---------- ---------- ---------- ---------- ---------- Dap ---------- ---------- ---------- ---------- ---------- Daa ---------- ---------- ---------- ---------- ---------- Dae ---------- ---------- ---------- ---------- ---------- Dan ---------- ---------- ---------- ---------- ---------- L1orl .......... .......... .......... .......... .......... Musmht ---------- ---------- ---------- ---------- ---------- Dad ---------- ---------- ---------- ---------- ---------- Af081111 .......... .......... .......... .......... .......... Af081109 .......... .......... .......... .......... .......... L1spa .......... .......... .......... .......... .......... Tfnode1 .......... .......... .......... .......... .......... [ 4200 ' ' ' ' ] L1mdA2 AAGTTGAATC AGGATCAAGT TGACCATCTA AACAGTCCCA TATCACCTAA Dat ---------- ---------- ---------- ---------- ---------- Af081112 .......... .......... .....t.... .......... ....c..... Af081107 .......... .......... .....t.... .......... ....c..... Ac5938b .......... .......... .....t.... .......... ....c..... Tfnode2 .......... .......... .....t.... .......... ....c..... Ac4405lr ---------- ---------- ---------- ---------- ---------- Af081113 .......... .......... .....t.... .......... ....c..... Af081106 .......... .......... .....t.... .......... ....c..... D2 ---------- ---------- ---------- ---------- ---------- D3 ---------- ---------- ---------- ---------- ---------- L1md4 ---------- ---------- ---------- ---------- ---------- Dab ---------- ---------- ---------- ---------- ---------- Dar ---------- ---------- ---------- ---------- ---------- Daq ---------- ---------- ---------- ---------- ---------- Dap ---------- ---------- ---------- ---------- ---------- Daa ---------- ---------- ---------- ---------- ---------- Dae ---------- ---------- ---------- ---------- ---------- Dan ---------- ---------- ---------- ---------- ---------- L1orl .......... .......... .....t.... .......... ....c..... Musmht ---------- ---------- ---------- ---------- ---------- Dad ---------- ---------- ---------- ---------- ---------- Af081111 .......... .......... .....t.... .......... ....c..... Af081109 .......... .......... .....t.... .......... ....c..... L1spa .......... .......... .....t.... .......... ....c..... Tfnode1 .......... .......... .....t.... .......... ....c..... [ 4250 ' ' ' ' ] L1mdA2 AGAAATAGAA GCAGTTATTA ATAGTCTCCC AACCAAAAAA AGCCCAGGAC Dat ---------- ---------- ---------- ---------- ---------- Af081112 .......... .......... ...c...... .g........ .......... Af081107 .......... .......... .......... .g........ .......... Ac5938b .....g.... .......... .......... .g........ .......... Tfnode2 .......... .......... .......... .g........ .......... Ac4405lr ---------- ---------- ---------- ---------- ---------- Af081113 .......... .......... .......... .g........ .......... Af081106 .......... .......... .......... .g........ .......... D2 ---------- ---------- ---------- ---------- ---------- D3 ---------- ---------- ---------- ---------- ---------- L1md4 ---------- ---------- ---------- ---------- ---------- Dab ---------- ---------- ---------- ---------- ---------- Dar ---------- ---------- ---------- ---------- ---------- Daq ---------- ---------- ---------- ---------- ---------- Dap ---------- ---------- ---------- ---------- ---------- Daa ---------- ---------- ---------- ---------- ---------- Dae ---------- ---------- ---------- ---------- ---------- Dan ---------- ---------- ---------- ---------- ---------- L1orl .......... .......... .......... .g........ .......... Musmht ---------- ---------- ---------- ---------- ---------- Dad ---------- ---------- ---------- ---------- ---------- Af081111 .......... .......... .......... .g........ .......... Af081109 .......... .......... .......... .g........ .......... L1spa .......... .......... .......... .g........ .......... Tfnode1 .......... .......... .......... .g........ .......... [ 4300 ' ' ' ' ] L1mdA2 CAGATGGGTT TAGTGCAGAG TTCTATCAGA CCTTCAAAGA AGATCTAATT Dat ---------- ---------- ---------- ---------- ---------- Af081112 ....c..... .......... .......... .......... ........c. Af081107 ....c..... .......... .......... .......... ........c. Ac5938b ....c..... .......... .......... .......... ........c. Tfnode2 ....c..... .......... .......... .......... ........c. Ac4405lr ---------- ---------- ---------- ---------- ---------- Af081113 ....c..... .......... .......... .......... ........c. Af081106 ....c..... .......... .......... .......... ........c. D2 ---------- ---------- ---------- ---------- ---------- D3 ---------- ---------- ---------- ---------- ---------- L1md4 ---------- ---------- ---------- ---------- ---------- Dab ---------- ---------- ---------- ---------- ---------- Dar ---------- ---------- ---------- ---------- ---------- Daq ---------- ---------- ---------- ---------- ---------- Dap ---------- ---------- ---------- ---------- ---------- Daa ---------- ---------- ---------- ---------- ---------- Dae ---------- ---------- ---------- ---------- ---------- Dan ---------- ---------- ---------- ---------- ---------- L1orl ....c..... .......... .......... .......... ........c. Musmht ---------- ---------- ---------- ---------- ---------- Dad ---------- ---------- ---------- ---------- ---------- Af081111 ....c..... .......... .......... .......... ........c. Af081109 ....c..... .......... .......... .......... ........c. L1spa ....c..... .......... .......... .......... ........c. Tfnode1 ....c..... .......... .......... .......... ........c. [ 4350 ' ' ' ' ] L1mdA2 CCAATTCTGC ACAAACTATT TCACAAAATA GAAGTAGAAG GTACTCTACC Dat ---------- ---------- ---------- ---------- ---------- Af081112 ...g...... .......t.. ......g... .......... ...t...... Af081107 ...g...... .......t.. ......g... .......... ...t...... Ac5938b ...g...... .......t.. ......g... .......... ...t...... Tfnode2 ...g...... .......t.. ......g... .......... ...t...... Ac4405lr ---------- ---------- ---------- ---------- ---------- Af081113 ...g...... .......t.. ......g... .......... ...t...... Af081106 ...g...... .......t.. ......g... .......... ...t...... D2 ---------- ---------- ---------- ---------- ---------- D3 ---------- ---------- ---------- ---------- ---------- L1md4 ---------- ---------- ---------- ---------- ---------- Dab ---------- ---------- ---------- ---------- ---------- Dar ---------- ---------- ---------- ---------- ---------- Daq ---------- ---------- ---------- ---------- ---------- Dap ---------- ---------- ---------- ---------- ---------- Daa ---------- ---------- ---------- ---------- ---------- Dae ---------- ---------- ---------- ---------- ---------- Dan ---------- ---------- ---------- ---------- ---------- L1orl ...g...... .......t.. ......g... .......... ...t...... Musmht ---------- ---------- ---------- ---------- ---------- Dad ---------- ---------- ---------- ---------- ---------- Af081111 ...g...... .......t.. ......g... .......... ...t...... Af081109 ...g...... .......t.. ......g... .......... ...t...... L1spa ...g...... .......t.. ......g... .......... ...t...... Tfnode1 ...g...... .......t.. ......g... .......... ...t...... [ 4400 ' ' ' ' ] L1mdA2 CAACTCATTT TATGAAGCCA CTATTACTCT GATACCTAAA CCACAGAAAG Dat ---------- ---------- ---------- ---------- ---------- Af081112 .......... .......... .......... .......... .......... Af081107 .......... .......... .......... .......... .......... Ac5938b .......... .......... .......... .......... .......... Tfnode2 .......... .......... .......... .......... .......... Ac4405lr ---------- ---------- ---------- ---------- ---------- Af081113 .......... .......... .......... .......... .......... Af081106 .......... .......... .......... .......... .......... D2 ---------- ---------- ---------- ---------- ---------- D3 ---------- ---------- ---------- ---------- ---------- L1md4 ---------- ---------- ---------- ---------- ---------- Dab ---------- ---------- ---------- ---------- ---------- Dar ---------- ---------- ---------- ---------- ---------- Daq ---------- ---------- ---------- ---------- ---------- Dap ---------- ---------- ---------- ---------- ---------- Daa ---------- ---------- ---------- ---------- ---------- Dae ---------- ---------- ---------- ---------- ---------- Dan ---------- ---------- ---------- ---------- ---------- L1orl .......... .......... .......... .......... .......... Musmht ---------- ---------- ---------- ---------- ---------- Dad ---------- ---------- ---------- ---------- ---------- Af081111 .......... .......... .......... .......... .......... Af081109 .......... .......... .......... .......... .......... L1spa .......... .......... .......... .......... .......... Tfnode1 .......... .......... .......... .......... .......... [ 4450 ' ' ' ' ] L1mdA2 ATCCAACAAA GATAGAGAAC TTCAGACCAA TTTCTCTTAT GAATATCGAT Dat ---------- ---------- ---------- ---------- ---------- Af081112 .......... .......... .......... .......... ...c...... Af081107 .......... .......... .......... .......... ...c...... Ac5938b .......... .......... .......... .......... ...c...... Tfnode2 .......... .......... .......... .......... ...c...... Ac4405lr ---------- ---------- ---------- ---------- ---------- Af081113 .......... .......... .......... .......... ...c...... Af081106 .......... .......... .......... .......... ...c...... D2 ---------- ---------- ---------- ---------- ---------- D3 ---------- ---------- ---------- ---------- ---------- L1md4 ---------- ---------- ---------- ---------- ---------- Dab ---------- ---------- ---------- ---------- ---------- Dar ---------- ---------- ---------- ---------- ---------- Daq ---------- ---------- ---------- ---------- ---------- Dap ---------- ---------- ---------- ---------- ---------- Daa ---------- ---------- ---------- ---------- ---------- Dae ---------- ---------- ---------- ---------- ---------- Dan ---------- ---------- ---------- ---------- ---------- L1orl .......... .......... .......... .......... ...c...... Musmht ---------- ---------- ---------- ---------- ---------- Dad ---------- ---------- ---------- ---------- ---------- Af081111 .......... .......... .......... .......... ...c...... Af081109 .......... .......... .......... .......... ...c...... L1spa .......... .......... .......... .......... ...c...... Tfnode1 .......... .......... .......... .......... ...c...... [ 4500 ' ' ' ' ] L1mdA2 GCAAAAATCC TCAATAAAAT TCTCGCTAAC CGAATCCAAG AACACATTAA Dat ---------- ---------- ---------- ---------- ---------- Af081112 .......... .t........ .......... .......... .......... Af081107 .......... .t........ .......... .......... .......... Ac5938b .......... .t........ .......... .......... .......... Tfnode2 .......... .t........ .......... .......... .......... Ac4405lr ---------- ---------- ---------- ---------- ---------- Af081113 .......... .t........ .......... .......... .......... Af081106 .......... .t........ .......... .......... .......... D2 ---------- ---------- ---------- ---------- ---------- D3 ---------- ---------- ---------- ---------- ---------- L1md4 ---------- ---------- ---------- ---------- ---------- Dab ---------- ---------- ---------- ---------- ---------- Dar ---------- ---------- ---------- ---------- ---------- Daq ---------- ---------- ---------- ---------- ---------- Dap ---------- ---------- ---------- ---------- ---------- Daa ---------- ---------- ---------- ---------- ---------- Dae ---------- ---------- ---------- ---------- ---------- Dan ---------- ---------- ---------- ---------- ---------- L1orl .......... .t........ .......... .......... .......... Musmht ---------- ---------- ---------- ---------- ---------- Dad ---------- ---------- ---------- ---------- ---------- Af081111 ........t. .t........ .......... .......... .......... Af081109 .......... .t........ .......... .......... .......... L1spa .......... .t........ .......... .......... .......... Tfnode1 ........t. .t........ .......... .......... .......... [ 4550 ' ' ' ' ] L1mdA2 AGCAATCATC CATCCTGACC AAGTAGGTTT TATTCCAGGG ATGCAGGGAT Dat ---------- ---------- ---------- ---------- ---------- Af081112 .......... .......... .......... .......... .......... Af081107 .......... .......... .......... .......... .......... Ac5938b .......... .......... .......... .......... .......... Tfnode2 .......... .......... .......... .......... .......... Ac4405lr ---------- ---------- ---------- ---------- ---------- Af081113 .......... .......... .......... .......... .......... Af081106 .......... .......... .......... .......... .......... D2 ---------- ---------- ---------- ---------- ---------- D3 ---------- ---------- ---------- ---------- ---------- L1md4 ---------- ---------- ---------- ---------- ---------- Dab ---------- ---------- ---------- ---------- ---------- Dar ---------- ---------- ---------- ---------- ---------- Daq ---------- ---------- ---------- ---------- ---------- Dap ---------- ---------- ---------- ---------- ---------- Daa ---------- ---------- ---------- ---------- ---------- Dae ---------- ---------- ---------- ---------- ---------- Dan ---------- ---------- ---------- ---------- ---------- L1orl .......... .......... .......... .......... .......... Musmht ---------- ---------- ---------- ---------- ---------- Dad ---------- ---------- ---------- ---------- ---------- Af081111 .......... .......... .......... .......... .......... Af081109 .......... .......... .......... .......... .......... L1spa .......... .......... .......... .......... .......... Tfnode1 .......... .......... .......... .......... .......... [ 4600 ' ' ' ' ] L1mdA2 GGTTTAATAT ACGAAAATCC ATCAATGTAA TCCATTATAT AAACAAACTC Dat ---------- ---------- ---------- ---------- ---------- Af081112 .......... .......... .......... .......... .......... Af081107 .......... .......... .......... .......... .......... Ac5938b .......... .......... .......... .......... .......... Tfnode2 .......... .......... .......... .......... .......... Ac4405lr ---------- ---------- ---------- ---------- ---------- Af081113 .......... .......... .......... .......... .......... Af081106 .......... .......... .......... .......... .......... D2 ---------- ---------- ---------- ---------- ---------- D3 ---------- ---------- ---------- ---------- ---------- L1md4 ---------- ---------- ---------- ---------- ---------- Dab ---------- ---------- ---------- ---------- ---------- Dar ---------- ---------- ---------- ---------- ---------- Daq ---------- ---------- ---------- ---------- ---------- Dap ---------- ---------- ---------- ---------- ---------- Daa ---------- ---------- ---------- ---------- ---------- Dae ---------- ---------- ---------- ---------- ---------- Dan ---------- ---------- ---------- ---------- ---------- L1orl .......... .......... .......... .......... .......... Musmht ---------- ---------- ---------- ---------- ---------- Dad ---------- ---------- ---------- ---------- ---------- Af081111 .......... .......... .......... .......... .......... Af081109 .......... .......... .......... .......... .......... L1spa .......... .......... .......... .......... .......... Tfnode1 .......... .......... .......... .......... .......... [ 4650 ' ' ' ' ] L1mdA2 AAAGACAAAA ACCACATGAT CATCTCGTTA GATGCAGAAA AAGCATTTGA Dat ---------- ---------- ---------- ---------- ---------- Af081112 .......... .......... .......... .......... .......... Af081107 .......... .......... .......... .......... .......... Ac5938b .......... .......... .......... .......... .......... Tfnode2 .......... .......... .......... .......... .......... Ac4405lr ---------- ---------- ---------- ---------- ---------- Af081113 .......... .......... .......... .......... .......... Af081106 .......... .......... .......... .......... .......... D2 ---------- ---------- ---------- ---------- ---------- D3 ---------- ---------- ---------- ---------- ---------- L1md4 ---------- ---------- ---------- ---------- ---------- Dab ---------- ---------- ---------- ---------- ---------- Dar ---------- ---------- ---------- ---------- ---------- Daq ---------- ---------- ---------- ---------- ---------- Dap ---------- ---------- ---------- ---------- ---------- Daa ---------- ---------- ---------- ---------- ---------- Dae ---------- ---------- ---------- ---------- ---------- Dan ---------- ---------- ---------- ---------- ---------- L1orl .......... .......... .......... .......... .......... Musmht ---------- ---------- ---------- ---------- ---------- Dad ---------- ---------- ---------- ---------- ---------- Af081111 .......... .......... .......... .......... .......... Af081109 .......... .......... .......... .......... .......... L1spa .......... .......... .......... .......... .......... Tfnode1 .......... .......... .......... .......... .......... [ 4700 ' ' ' ' ] L1mdA2 CAAGATCCAA CACCCATTCA TGATAAAAGT TTTGGAAAGA TCAGGAATTC Dat ---------- ---------- ---------- ---------- ---------- Af081112 .......... .......... .......... .c........ .......... Af081107 .......... .......... .......... .c........ .......... Ac5938b .......... .......... .......... .c........ .......... Tfnode2 .......... .......... .......... .c........ .......... Ac4405lr ---------- ---------- ---------- ---------- ---------- Af081113 .......... .......... .......... .c........ .......... Af081106 .......... .......... .......... .c........ .......... D2 ---------- ---------- ---------- ---------- ---------- D3 ---------- ---------- ---------- ---------- ---------- L1md4 ---------- ---------- ---------- ---------- ---------- Dab ---------- ---------- ---------- ---------- ---------- Dar ---------- ---------- ---------- ---------- ---------- Daq ---------- ---------- ---------- ---------- ---------- Dap ---------- ---------- ---------- ---------- ---------- Daa ---------- ---------- ---------- ---------- ---------- Dae ---------- ---------- ---------- ---------- ---------- Dan ---------- ---------- ---------- ---------- ---------- L1orl .......... .......... .......... .c........ .......... Musmht ---------- ---------- ---------- ---------- ---------- Dad ---------- ---------- ---------- ---------- ---------- Af081111 .......... .......... .......... .c........ .......... Af081109 .......... .......... .......... .c........ .......... L1spa .......... .......... .......... .c........ .......... Tfnode1 .......... .......... .......... .c........ .......... [ 4750 ' ' ' ' ] L1mdA2 AAGGCCCATA CCTAAACATG ATAAAAGCAA TCTACAGCAA ACCAGTAGCC Dat ---------- ---------- ---------- ---------- ---------- Af081112 ......a... .......... .......... .......... .......... Af081107 ......a... .......... .......... .......... .......... Ac5938b ......a... .......... .......... .......... .......... Tfnode2 ......a... .......... .......... .......... .......... Ac4405lr ---------- ---------- ---------- ---------- ---------- Af081113 ......a... .......... .......... .......... .......... Af081106 ......a... .......... .......... .......... .......... D2 ---------- ---------- ---------- ---------- ---------- D3 ---------- ---------- ---------- ---------- ---------- L1md4 ---------- ---------- ---------- ---------- ---------- Dab ---------- ---------- ---------- ---------- ---------- Dar ---------- ---------- ---------- ---------- ---------- Daq ---------- ---------- ---------- ---------- ---------- Dap ---------- ---------- ---------- ---------- ---------- Daa ---------- ---------- ---------- ---------- ---------- Dae ---------- ---------- ---------- ---------- ---------- Dan ---------- ---------- ---------- ---------- ---------- L1orl ......a... .......... .......... .......... .......... Musmht ---------- ---------- ---------- ---------- ---------- Dad ---------- ---------- ---------- ---------- ---------- Af081111 ......a... .......... .......... .......... .......... Af081109 ......a... .......... .......... .......... .......... L1spa ......a... .......... .......... .......... .......... Tfnode1 ......a... .......... .......... .......... .......... [ 4800 ' ' ' ' ] L1mdA2 AACATCAAAG TAAATGGAGA GAAGCTGGAA GCAATCCCAC TAAAATCAGG Dat ---------- ---------- ---------- ---------- ---------- Af081112 .......... .......... .......... .......... .......... Af081107 .......... .......... .......... .......... .......... Ac5938b .......... .......... .......... .......... .......... Tfnode2 .......... .......... .......... .......... .......... Ac4405lr ---------- ---------- ---------- ---------- ---------- Af081113 .......... .......... .......... .......... .......... Af081106 .......... .......... .......... .......... .......... D2 ---------- ---------- ---------- ---------- ---------- D3 ---------- ---------- ---------- ---------- ---------- L1md4 ---------- ---------- ---------- ---------- ---------- Dab ---------- ---------- ---------- ---------- ---------- Dar ---------- ---------- ---------- ---------- ---------- Daq ---------- ---------- ---------- ---------- ---------- Dap ---------- ---------- ---------- ---------- ---------- Daa ---------- ---------- ---------- ---------- ---------- Dae ---------- ---------- ---------- ---------- ---------- Dan ---------- ---------- ---------- ---------- ---------- L1orl .......... .......... .......... .......... .......... Musmht ---------- ---------- ---------- ---------- ---------- Dad ---------- ---------- ---------- ---------- ---------- Af081111 .......... .......... .......... .......... .......... Af081109 .......... .......... .......... .......... .......... L1spa .......... .......... .......... .......... .......... Tfnode1 .......... .......... .......... .......... .......... [ 4850 ' ' ' ' ] L1mdA2 GACTAGACAA GGCTGCCCAC TTTCTCCCTA CCTTTTCAAC ATAGTACTTG Dat ---------- ---------- ---------- ---------- ---------- Af081112 .......... .......... .......... .......... .......... Af081107 .......... .......... .......... .......... .......... Ac5938b .......... .......... .......... .......... .......... Tfnode2 .......... .......... .......... .......... .......... Ac4405lr ---------- ---------- ---------- ---------- ---------- Af081113 .......... .......... .........c .......... .......... Af081106 .......... .......... .......... .......... .......... D2 ---------- ---------- ---------- ---------- ---------- D3 ---------- ---------- ---------- ---------- ---------- L1md4 ---------- ---------- ---------- ---------- ---------- Dab ---------- ---------- ---------- ---------- ---------- Dar ---------- ---------- ---------- ---------- ---------- Daq ---------- ---------- ---------- ---------- ---------- Dap ---------- ---------- ---------- ---------- ---------- Daa ---------- ---------- ---------- ---------- ---------- Dae ---------- ---------- ---------- ---------- ---------- Dan ---------- ---------- ---------- ---------- ---------- L1orl .......... .......... .......... .......... .......... Musmht ---------- ---------- ---------- ---------- ---------- Dad ---------- ---------- ---------- ---------- ---------- Af081111 .......... .......... .......... .......... .......... Af081109 .......... .......... .......... .......... .......... L1spa .......... .......... .......... .......... .......... Tfnode1 .......... .......... .......... .......... .......... [ 4900 ' ' ' ' ] L1mdA2 AAGTATTAGC CAGAGCAATT CGACAACAAA AGGAGATCAA GGGGATACAA Dat ---------- ---------- ---------- ---------- ---------- Af081112 .......... .......... .......... .......... .......... Af081107 .......... .......... .......... .......... .......... Ac5938b .......... .......... .......... .......... .......... Tfnode2 .......... .......... .......... .......... .......... Ac4405lr ---------- ---------- ---------- ---------- ---------- Af081113 .......... .......... .......... .......... .......... Af081106 .......... .......... .......... .......... .......... D2 ---------- ---------- ---------- ---------- ---------- D3 ---------- ---------- ---------- ---------- ---------- L1md4 ---------- ---------- ---------- ---------- ---------- Dab ---------- ---------- ---------- ---------- ---------- Dar ---------- ---------- ---------- ---------- ---------- Daq ---------- ---------- ---------- ---------- ---------- Dap ---------- ---------- ---------- ---------- ---------- Daa ---------- ---------- ---------- ---------- ---------- Dae ---------- ---------- ---------- ---------- ---------- Dan ---------- ---------- ---------- ---------- ---------- L1orl .......... .......... .......... .......... .......... Musmht ---------- ---------- ---------- ---------- ---------- Dad ---------- ---------- ---------- ---------- ---------- Af081111 .......... .......... .......... .......... .......... Af081109 .......... .......... .......... .......... .......... L1spa .......... .......... .......... .......... .......... Tfnode1 .......... .......... .......... .......... .......... [ 4950 ' ' ' ' ] L1mdA2 ATTGGAAAAG AGGAAGTCAA AATATCACTT CTTGCAGATG ATATGATAGT Dat ---------- ---------- ---------- ---------- ---------- Af081112 .......... .......... .......... t......... .......... Af081107 .......... .......... .......... t......... .......... Ac5938b .......... .......... .......... t......... .......... Tfnode2 .......... .......... .......... t......... .......... Ac4405lr ---------- ---------- ---------- ---------- ---------- Af081113 .......... .......... .......... t......... .......... Af081106 .......... .......... .......... t......... .......... D2 ---------- ---------- ---------- ---------- ---------- D3 ---------- ---------- ---------- ---------- ---------- L1md4 ---------- ---------- ---------- ---------- ---------- Dab ---------- ---------- ---------- ---------- ---------- Dar ---------- ---------- ---------- ---------- ---------- Daq ---------- ---------- ---------- ---------- ---------- Dap ---------- ---------- ---------- ---------- ---------- Daa ---------- ---------- ---------- ---------- ---------- Dae ---------- ---------- ---------- ---------- ---------- Dan ---------- ---------- ---------- ---------- ---------- L1orl .......... .......... .......... t......... .......... Musmht ---------- ---------- ---------- ---------- ---------- Dad ---------- ---------- ---------- ---------- ---------- Af081111 .......... .......... .......... t......... .......... Af081109 .......... .......... .......... t......... .......... L1spa .......... .......... .......... t......... .......... Tfnode1 .......... .......... .......... t......... .......... [ 5000 ' ' ' ' ] L1mdA2 ATATATAAGT GACCCTAAAA ATTCTACCAG AGAACTCCTA AACCTGATAA Dat ---------- ---------- ---------- ---------- ---------- Af081112 .......... .......... ....c.a... .......... .......... Af081107 .......... .......... ....c.a... .......... .......... Ac5938b .......... .......... ....c.a... .......... .......... Tfnode2 .......... .......... ....c.a... .......... .......... Ac4405lr ---------- ---------- ---------- ---------- ---------- Af081113 .......... .......... ....c.a... .......... .......... Af081106 .......... .......... ....c.a... .......... .......... D2 ---------- ---------- ---------- ---------- ---------- D3 ---------- ---------- ---------- ---------- ---------- L1md4 ---------- ---------- ---------- ---------- ---------- Dab ---------- ---------- ---------- ---------- ---------- Dar ---------- ---------- ---------- ---------- ---------- Daq ---------- ---------- ---------- ---------- ---------- Dap ---------- ---------- ---------- ---------- ---------- Daa ---------- ---------- ---------- ---------- ---------- Dae ---------- ---------- ---------- ---------- ---------- Dan ---------- ---------- ---------- ---------- ---------- L1orl .......... .......... ....c.a... .......... .......... Musmht ---------- ---------- ---------- ---------- ---------- Dad ---------- ---------- ---------- ---------- ---------- Af081111 .......... .......... ....c.a... .......... .......... Af081109 .......... .......... ....c.a... .......... .......... L1spa .......... .......... ....c.a... .......... .......... Tfnode1 .......... .......... ....c.a... .......... .......... [ 5050 ' '