#NEXUS [TF promoter monomers, 1/11/99, after addition of 5938A and B] Begin data; Dimensions ntax=69 nchar=217; Format datatype=DNA gap=- missing=? matchchar=. interleave; Matrix [ ' ' ' ' 50] Consensus GACAGCCGGCCACCTTCCGGACCGGAGGACAGGTGCCCGCCCGGCTGGGG L1Spam1 .......a..........t...................a......a.... AF081109m1 ......................................a........... AF081111m1 ......................................a........... L1Orlm1 ......................................a........... AF081112m1 .......a......g................................... AF081113m1 .......................a.......................... AF081107m1 ......................t...............a........... AF081106m1 ......................................a......a.... AF081104m1 ......................................a........... AF081114m1 ......................................a........... AF081108m1 ......................................a........... AF081105m1 ......................................a......a.... AF081110m1 .......................a..................a....... AC5938Bm1 ......................................a......a.... AC5938Am1 .......a......a...a.................t............. L1Spam2 .......................a.......................... AF081109m2 .................................................. AF081111m2 .......a......g..t................................ L1Orlm2 .......................a..............a........... AF081112m2 .......a......g................................... AF081113m2 -------------------------------------------------- AF081107m2 ......................................a........... AF081106m2 .......a......g........................t.......... AF081104m2 .......a......g................................... AF081114m2 .......................a.......................... AF081108m2 ..............a................................... AF081105m2 .......................a.......................... AF081110m2 .......a......g................................... AC5938Bm2 .......a......g........................t.......... AC5938Am2 -------------------------------------------------- L1Spam3 .......................a.......................... AF081109m3 .................................................. AF081111m3 .................t................................ L1Orlm3 .................................................. AF081112m3 .......................a.......................... AF081107m3 ......................................a........... AF081106m3 .................................................. AF081104m3 -------------------------------------------------- AF081114m3 .......a...............a..............a........... AF081108m3 -------------------------------------------------- AF081105m3 -------------------------------------------------- AF081110m3 .......................................t..a....... AC5938Bm3 .................................................. L1Spam4 .................t.....a.......................... AF081109m4 -------------------------------------------------- AF081111m4 -----------...g...a............................... L1Orlm4 .......a......gg.t................................ AF081112m4 -------------------------------------------------- AF081107m4 -------------------------------------------------- AF081106m4 .......a......g..t................................ AF081114m4 ----------------------------------------..a....... AF081110m4 .......a......g......................t............ AC5938Bm4 .......................a..............a........... L1Spam5 .......a......a................................... L1Orlm5 .......................a.......................... AF081106m5 -------------------------------------------------- AF081110m5 .................................................. AC5938Bm5 .................................................. L1Spam6 .......................a.......................... L1Orlm6 -------------------------------------------------- AF081110m6 .......a......g................................... AC5938Bm6 .......a......g..t................................ L1Spam7 .................t.....a.......................... AF081110m7 -------------------------------------------------- AC5938Bm7 .......a......g................................... L1Spam8 -------------------------------------------------- AC5938Bm8 .......a......g................................... AC5938Bm9 -------------------------------------------------- [ ' ' ' ' 100] Consensus AGGCGGCCTAAGCCACAGCAGCAGCGGTCGCCATCTTGGTCC-GGGACCC L1Spam1 ..........................................c.....t. AF081109m1 ..........................................c.....t. AF081111m1 ..........................................c.....t. L1Orlm1 ..........................................c.....t. AF081112m1 ..........................................c.....t. AF081113m1 .....a....................................c.....t. AF081107m1 ..........................................c.....t. AF081106m1 ..........................................c.....t. AF081104m1 ..........................................c.....t. AF081114m1 ..........................................c.....t. AF081108m1 ....a.....................................c.....t. AF081105m1 ..........................................c.....t. AF081110m1 ..........................................c.....t. AC5938bm1 ..........................................c.....t. AC5938am1 ....a.....................................c.....t. L1Spam2 .....a....................................-....... AF081109m2 ..........................................-....... AF081111m2 ..........................................-....... L1Orlm2 ..........................................-....... AF081112m2 .....a....................................-....... AF081113m2 --------------------------------........t.-....... AF081107m2 .....a....................................-....... AF081106m2 ..........................................-.a..... AF081104m2 ..........................................-.a..... AF081114m2 .....a....................................-.a..... AF081108m2 ..........................................-aa..... AF081105m2 .....a....................................-....... AF081110m2 ..........................................-.a..... AC5938bm2 ................t.........................-.a..... AC5938am2 --------------------------------..........-....... L1Spam3 ..........................................-....... AF081109m3 .....a....................................-a...... AF081111m3 .......t..................................-....... L1Orlm3 .....a....................................-....... AF081112m3 .....a....................................-....... AF081107m3 ..........................................-....... AF081106m3 .....a....................................-....... AF081104m3 -------------------------------------.....-....... AF081114m3 ..........................................-....... AF081108m3 ---------------------------------------...-....... AF081105m3 -------------------------------------------------- AF081110m3 ..........................................-....... AC5938bm3 .....a....................................-....... L1Spam4 ..........................................-....... AF081109m4 -------------------------------------------------- AF081111m4 ..........................................-....... L1Orlm4 ..........................................-....... AF081112m4 --------------------------------..........-....... AF081107m4 ---------------------.....................-.a..... AF081106m4 ..........................................-....... AF081114m4 ..........................................-....... AF081110m4 ..........................................-.a..... AC5938bm4 ..........................................-....... L1Spam5 ..........................................-.a..... L1Orlm5 .....a....................................-.a..... AF081106m5 -------------------------------------------------- AF081110m5 ..........................................-....... AC5938Bm5 .....a....................................-....... L1Spam6 ..........................................-....... L1Orlm6 -------------------------------g..........-.a..... AF081110m6 ..........................................-.a..... AC5938Bm6 ..........................................-....... L1Spam7 ..........................................-....... AF081110m7 -------------------------------------------------- AC5938Bm7 ......a...................................-.a..... L1Spam8 -------------------------------------------------- AC5938Bm8 ......a...................................-.a..... AC5938Bm9 -------------.............................-....... [ ' ' ' ' 150] Consensus -GCCGAACTTAGGAAATTAGTCTGAACAGGTGAGAGGGTGCGCCAGAGAA L1Spam1 caag...........t........ctt.........tc..ta...----- AF081109m1 caag...........t........ctt.........tc..ta...----- AF081111m1 caag...........t........ctt.........tc..ta...----- L1Orlm1 caag...........t........ctt.a.......tc..ta...----- AF081112m1 caag...........t........ctt.........tc..ta...----- AF081113m1 caag...........t........ctt.........tc..ta...----- AF081107m1 caag...........t........ctt.........tc..ta...----- AF081106m1 caag...........t........ctt.........tc..ta...----- AF081104m1 caag...........t........ctt.........tc..ta...----- AF081114m1 caag...........t........ctt.........tc..ta...----- AF081108m1 caag...........t........ctt.........tc..ta...----- AF081105m1 caag...........t........ctt.........tc..ta...----- AF081110m1 caag...........t........ctt.........tc..ta...----- AC5938bm1 caag...........t........ctt.........tc..ta.a.----- AC5938am1 caag...........t........ctt.........tc..ta...----- L1Spam2 -................................................. AF081109m2 -................................................. AF081111m2 -................................................. L1Orlm2 -................................................. AF081112m2 -................................................. AF081113m2 -................................................. AF081107m2 -................................................. AF081106m2 -................................................. AF081104m2 -................................................. AF081114m2 -................................................. AF081108m2 -.........................a....................... AF081105m2 -............g.................................... AF081110m2 -................................................. AC5938bm2 -................................................. AC5938am2 -................................................. L1Spam3 -................................................. AF081109m3 -................................................. AF081111m3 -................................................. L1Orlm3 -................................................. AF081112m3 -................................................. AF081107m3 -................................................. AF081106m3 -................................................. AF081104m3 -........................................a........ AF081114m3 -................................................. AF081108m3 -...t............................................. AF081105m3 ----------........................................ AF081110m3 -................................................. AC5938bm3 -............g.................................... L1Spam4 -................................................. AF081109m4 ----.............................................. AF081111m4 -................................................. L1Orlm4 -................................................. AF081112m4 -................................................. AF081107m4 -................................................. AF081106m4 -................................................. AF081114m4 -................................................. AF081110m4 -................................................. AC5938bm4 -................................................. L1Spam5 -................................................. L1Orlm5 -................................................. AF081106m5 ----------........................................ AF081110m5 -................................................. AC5938bm5 -................................................. L1Spam6 -................................................. L1Orlm6 -................................................. AF081110m6 -................................................. AC5938bm6 -................................................. L1Spam7 -................................................. AF081110m7 -................................................. AC5938bm7 -................................................. L1Spam8 --.g.............................................. AC5938bm8 -................................................. AC5939bm9 -..t.............................................. [ ' ' ' ' 200] Consensus CCTGACAGCTTCTGGAACAGGCAGAAGC-ACAGAGGCGCTGAGGCAGCAC L1Spam1 ....---------.....t.c..-....a...c..tgt.....aa..gt. AF081109m1 ....---------.....t.c..-....a...c..tgt.....aa..gt. AF081111m1 ....---------.....t.c..-....a...c..tgt.....aa..gt. L1Orlm1 ....---------.....t.c..-....a...c..tgt.....aa..gt. AF081112m1 ....---------.....t.c..-....a...c.ctgt.....aa..gt. AF081113m1 ....---------.....t.c..-....a...c..tgt.....aa..gt. AF081107m1 ....---------.....t.c..-....a...c..tgt.....aa..gt. AF081106m1 ....---------.....t.c..-....a...c..tgt.....aa..gt. AF081104m1 ....---------.....t.c..-....a...c.ctgt.....aa..gt. AF081114m1 ....---------.....t.c..-....a...c..tgt.....aa..gt. AF081108m1 ....---------.....t.c..-....a...c..tgt.....aa..gt. AF081105m1 ....---------.....t.c..-....a...c..tgt.....aa..gt. AF081110m1 ....---------.....t.c..-....a...c.ctgt.....aa..gt. AC5938bm1 ....---------.....t.c..-....a...c..tgt.....aa..gt. AC5938am1 ....---------.....t.c..-....a...c..tgt.....aa..gt. L1Spam2 ......................g.....-..................... AF081109m2 ............................-..................... AF081111m2 .ag.........................-.......g............. L1Orlm2 ............................-.......g............. AF081112m2 ......................g.....-..................... AF081113m2 ............................-..................... AF081107m2 ............................-..................... AF081106m2 ............................-..................... AF081104m2 ............................-..................... AF081114m2 ......................g.....-...a................. AF081108m2 ............................-..................... AF081105m2 ......................g.....-..................... AF081110m2 ............................-........a............ AC5938bm2 ............................-..................... AC5938am2 ......................g.....-..................... L1Spam3 ............................-..................... AF081109m3 ......................g.....-..................... AF081111m3 ............................-........a............ L1Orlm3 ......................g.....-..................... AF081112m3 ......................g.....-..................... AF081107m3 ............................-..................... AF081106m3 ......................g.....-..................... AF081104m3 ......................g.....-..................... AF081114m3 ............................-...a................. AF081108m3 ......................g.....-..................... AF081105m3 ............................-..................... AF081110m3 ......................g.....-..................... AC5938bm3 ......................g.....-..................... L1Spam4 ............................-..................... AF081109m4 ......................g.....-..................... AF081111m4 ............................-.......g............. L1Orlm4 .........c..................-.......g............. AF081112m4 ............................-.......g............. AF081107m4 .........c..................-..................... AF081106m4 .........c..................-.......g............. AF081114m4 ......................g.....-........a............ AF081110m4 ............................-..................... AC5938bm4 ............................-..................... L1Spam5 .............a........c.....-..................... L1Orlm5 ......................g.....-........a............ AF081106m5 ......................g.....-........a............ AF081110m5 ......................g.....-..................... AC5938bm5 ......................g.....-..................... L1Spam6 ......................g.....-..................... L1Orlm6 ......................g.....-..................... AF081110m6 ............................-..................... AC5938bm6 .........c...........a......-.......g............. L1Spam7 ............................-..................... AF081110m7 ......................g.....-..................... AC5938bm7 ......................g.....-..................... L1Spam8 ......................g.....-.................t... AC5938bm8 ......................g.....-..................... AC5939bm9 ......................g.....-..................... [ ' 217] Consensus CCTGT-GTGGGCCGGG- L1Spam1 .-...tt......ttct AF081109m1 .-...tt......ttct AF081111m1 .-...tt......ttct L1Orlm1 .-...tt......ttct AF081112m1 .-...tt......ttct AF081113m1 .-...tt......ttct AF081107m1 .-...tt......ttct AF081106m1 .-...tt......ttct AF081104m1 .-...tt......ttct AF081114m1 .-...tt......ttct AF081108m1 .-...tt......ttct AF081105m1 .-...tt......ttct AF081110m1 .-...tt......ttct AC5938bm1 .-...tt......ttct AC5938am1 .-...tt......ttct L1Spam2 .....-..........- AF081109m2 .....-..........- AF081111m2 .....-..........- L1Orlm2 .....-..........- AF081112m2 .....-.......a..- AF081113m2 .....-..........- AF081107m2 ...t.-..........- AF081106m2 .....-..........- AF081104m2 .....-..........- AF081114m2 .....-..........- AF081108m2 .....-..........- AF081105m2 .....-..........- AF081110m2 .....-..........- AC5938bm2 .....-..........- AC5938am2 ...t.-..........- L1Spam3 .....-..........- AF081109m3 .....-..........- AF081111m3 ...t.-..........- L1Orlm3 ....c-..........- AF081112m3 .....-.......a..- AF081107m3 .....-..........- AF081106m3 ...t.-..........- AF081104m3 ...t.-..........- AF081114m3 .....-..........- AF081108m3 ...t.-..........- AF081105m3 .....-..........- AF081110m3 ...t.-..........- AC5938bm3 ...t.-..........- L1Spam4 .....-..........- AF081109m4 .....-..........- AF081111m4 .....-..........- L1Orlm4 ....a-..........- AF081112m4 .....-..........- AF081107m4 .....-..........- AF081106m4 .....-..........- AF081114m4 ...t.-..........- AF081110m4 .....-..........- AC5938bm4 .....-..........- L1Spam5 .....-..........- L1Orlm5 ...t.-..........- AF081106m5 ...t.-..........- AF081110m5 ...t.-..........- AC5938bm5 .....-..........- L1Spam6 ...t.-..........- L1Orlm6 .....-..........- AF081110m6 .....-..........- AC5938bm6 .....-..........- L1Spam7 .....-..........- AF081110m7 ...t.-..........- AC5938bm7 ...t.-..........- L1Spam8 .....-..........- AC5938bm8 ...t.-..........- AC5939bm9 ...t.-..........- ; End;