Index of terminasev2

Large subunit terminase packaging ATPase   General Comments
pfs               Large subunit terminase superfamily at pfs level of assembly.

pfsa7over350      pfsa7 family members with more than 350 aligned characters.

Lambda supergroup 2   Supergroup containing lambda, N15, CP-933R,X,U WO, wKue, lambdaW1,4, lambdaMc01, Gifsy-1, Fels-2,VHML, VP16T,C, 1103phi3-1, staphK, Lp-65


Terminase -pfra12   Large Terminase superfamily at pfra12 level of assembly; all phage families included; see comments included for general info on large terminase.

Sfi21 supergroup 1   Supergroup including Sfi19 & 21, rlt, A2, phiSLT, Bxb1, ski, BFK20

Sfi21 extended clade   Sfi21 clade proper plus its closest outgroup: the A2 clade
P27 clade         A clade within Sfi21 supergroup including P27, ST64B, phiE125 and D3.
phiSLT clade      A clade within Sfi21 supergroup including phiSLT.
Bxb1 ext. clade   Possibly polyphyletic grp with several mycophages, including Bxb1
CP-933C clade     A subgroup of the Sfi21 supergroup including CP933C and phi105
CP933N clade      A clade within Sfi21 supergroup including coli prophages CP 933N,V,M
Rlt clade         Most ancestral clade of the Sfi21 supergroup, plus BFK20.

T7 Supergroup 5   T7 large terminase superfamily, including T7 series, ul36 series, VpV262 & phBC6A51 group

T7 extended clade   T7 sensu stricto plus VpV262 and SIO1
ul36 clade        T7 supergroup component including ul36, TP901, TCU2009, Bcep781 and Rosebush
phBC6A51          T7 supergroup component including phBC6A51

Sfi11             Entry Pending

SPP1 subgroup     Weakly defined subgroup of Sfi11 supergroup, including SPP1, A118, HK620.

SPP1.SPP1 group   An arbitrary collection of sequences in SPP1 group but excluding PBsc clade.
PBSc clade        A clade within the SPP1 subgroup including PBSc, & Lj771
MM1 clade         A component of the SPP1 group, including MM1, A118 and phigle1
HK620 clade       A component of the SPP1 group


HSV supergroup 9   All herpes viruses and its relatives (eg. CMV)

HSV clade 1       A subdividsion of the HSV supergroup including human HSV6U
HSV clade 2       A subdividsion of the HSV superfamily derived mostly from non primates
HSV clade 3       A subdividion of the HSV supergroup including chicken viruses


T7 and Sfi21      comparison of T7 and Sfi21, using an ss2 file from an unrestricted NCBI nr database and one from a database made and only grouped by known family members
Rlt Supergrouping.   Rlt trial, testing whether a certain inconsistancies in the subgroup were noise or a problem of misgrouping...

Responding to request to display db = schfamilies