From demeler at biochem.uthscsa.edu Mon Jan 2 19:58:36 2006 From: demeler at biochem.uthscsa.edu (Borries Demeler) Date: Mon Jan 2 19:58:52 2006 Subject: [Ut-grid] HiPCaT Conference at UTHSCSA Jan 27 Message-ID: <200601030158.k031wapi020457@biochem.uthscsa.edu> Dear Colleagues, Please mark your calendar: On January 27th we will be hosting the next HiPCaT conference (HiPCaT = High Performance Computing across Texas) right here at UTHSCSA. This meeting will provide us with an opportunity to showcase HPC initiatives at UTHSCSA and UTSA to our colleagues at other HiPCaT institutions. My hope is to generate interest and discussion for efforts that lead to grid computing implementations on the new TIGRE grid (Texas Internet Grid for Research and Education), which will run on the new LEARN backbone (LEARN = Lone Star Education and Research Network - I'm going nuts with all these acronyms! - a 10 GB ethernet network loop to facilitate grid computing and high-bandwidth data exchange). Here is your chance to present your ideas for a grid implementation of your application to the experts in the field, and to get valuable feedback. Right now, HiPCaT is looking for applications suitable for TIGRE implementation. We will have HPC experts from several Texas institutions present at this meeting, and they would like to know what we have in store. Even if you don't have a parallelized MPI application ready to go, but have some ideas on how your application may benefit from grid computing, I would like to recruit you as a speaker for this meeting. I would like to arrange several speakers for 15-20 minute presentations + 5 minute question/answer period. If you are interested to present a short talk about your compute-intensive application, please contact me soon so I can reserve a speaker slot for you. The conference will be held in the presidential conference room in the new administration building, and it will be broadcast on the AccessGrid. Please respond no later than 1/15 if you are interested to give a presentation. Thanks, -Borries --- Borries Demeler, Ph.D. Assistant Professor The University of Texas Health Science Center at San Antonio Dept. of Biochemistry, MC 7760 7703 Floyd Curl Drive, San Antonio, Texas 78229-3901 Voice: 210-567-6592, Fax: 210-567-1136, Email: demeler@biochem.uthscsa.edu From Badgett at uthscsa.edu Tue Jan 3 04:02:43 2006 From: Badgett at uthscsa.edu (Badgett, Robert G) Date: Tue Jan 3 04:03:38 2006 Subject: [Ut-grid] HiPCaT Conference at UTHSCSA Jan 27 Message-ID: <61AF3547DEA7914BA985BFBE6CE060340E8918@hscpop1.win.uthscsa.edu> I would like to present about parallelization of MEDLINE. Thanks Bob -----Original Message----- From: ut-grid-bounces@biochem.uthscsa.edu on behalf of Borries Demeler Sent: Mon 1/2/2006 7:58 PM To: ut-grid@biochem.uthscsa.edu Subject: [Ut-grid] HiPCaT Conference at UTHSCSA Jan 27 Dear Colleagues, Please mark your calendar: On January 27th we will be hosting the next HiPCaT conference (HiPCaT = High Performance Computing across Texas) right here at UTHSCSA. This meeting will provide us with an opportunity to showcase HPC initiatives at UTHSCSA and UTSA to our colleagues at other HiPCaT institutions. My hope is to generate interest and discussion for efforts that lead to grid computing implementations on the new TIGRE grid (Texas Internet Grid for Research and Education), which will run on the new LEARN backbone (LEARN = Lone Star Education and Research Network - I'm going nuts with all these acronyms! - a 10 GB ethernet network loop to facilitate grid computing and high-bandwidth data exchange). Here is your chance to present your ideas for a grid implementation of your application to the experts in the field, and to get valuable feedback. Right now, HiPCaT is looking for applications suitable for TIGRE implementation. We will have HPC experts from several Texas institutions present at this meeting, and they would like to know what we have in store. Even if you don't have a parallelized MPI application ready to go, but have some ideas on how your application may benefit from grid computing, I would like to recruit you as a speaker for this meeting. I would like to arrange several speakers for 15-20 minute presentations + 5 minute question/answer period. If you are interested to present a short talk about your compute-intensive application, please contact me soon so I can reserve a speaker slot for you. The conference will be held in the presidential conference room in the new administration building, and it will be broadcast on the AccessGrid. Please respond no later than 1/15 if you are interested to give a presentation. Thanks, -Borries --- Borries Demeler, Ph.D. Assistant Professor The University of Texas Health Science Center at San Antonio Dept. of Biochemistry, MC 7760 7703 Floyd Curl Drive, San Antonio, Texas 78229-3901 Voice: 210-567-6592, Fax: 210-567-1136, Email: demeler@biochem.uthscsa.edu _______________________________________________ Ut-grid mailing list Ut-grid@biochem.uthscsa.edu http://biochem.uthscsa.edu/mailman/listinfo/ut-grid -------------- next part -------------- A non-text attachment was scrubbed... Name: not available Type: application/ms-tnef Size: 3966 bytes Desc: not available Url : http://biochem.uthscsa.edu/pipermail/ut-grid/attachments/20060103/d50e0ee6/attachment.bin From boisseau at tacc.utexas.edu Tue Jan 3 23:02:56 2006 From: boisseau at tacc.utexas.edu (John R. Boisseau) Date: Tue Jan 3 23:03:40 2006 Subject: [Ut-grid] Welcome to UT-grid (today's meeting) - MSI Contact Info Message-ID: Skipped content of type multipart/alternative-------------- next part -------------- A non-text attachment was scrubbed... Name: TACC Overview - brief.ppt Type: application/vnd.ms-powerpoint Size: 1743872 bytes Desc: TACC Overview - brief.ppt Url : http://biochem.uthscsa.edu/pipermail/ut-grid/attachments/20060103/4b1dc976/TACCOverview-brief-0001.ppt -------------- next part -------------- A non-text attachment was scrubbed... Name: TACC hosting policy.doc Type: application/msword Size: 43520 bytes Desc: TACC hosting policy.doc Url : http://biochem.uthscsa.edu/pipermail/ut-grid/attachments/20060103/4b1dc976/TACChostingpolicy-0001.doc From demeler at biochem.uthscsa.edu Wed Jan 4 08:32:16 2006 From: demeler at biochem.uthscsa.edu (Borries Demeler) Date: Wed Jan 4 08:32:28 2006 Subject: [Ut-grid] Update from Dr. J. Boisseau/TACC Message-ID: <200601041432.k04EWGKH001833@biochem.uthscsa.edu> Dear UT-Grid subscribers: For your information, I am forwarding a response from Jay regarding the mission and policies of TACC to the UT-GRID list. Parties interested in meeting with Jay's group on his return visit should get in contact with me, I will arrange the visit. Regards, -Borries > I hope everyone had a nice holiday break. I apologize for getting back > to this so long after the meeting at UTHSCSA but better late than > never... > > My action items: > - I've attached a very high-level overview of the center from a meeting > in October. (It hasn't been updated since because of SC2005 and the > holidays, but I will be updating this short one and the long one in > February.) I can delve into detail on any topic (such as the R&D topics) > for anyone who is interested. > - For a return trip to SA, I would like to schedule this in late > February/early March. On this trip, I will present/bring the info for > accessing TACC systems via the TeraGrid. We can even go through the > process of having someone apply for an allocation on this trip. > Preferred dates in SA? > - Our (draft) policy for hosting systems is attached. We are actually in > the process of negotiating a new system for a PI here at UT Austin. If > anybody at UTHSCSA is interested in having TACC purchase (at great > discount) and host (professionally, with 24x7x365 monitoring) a system > or an expansion of an existing TACC system, please let me know. > > Thanks, > Jay > > ___________________________________________________________________ > John R. Boisseau, Ph.D. - Director (512) 475-9411 (main) > Texas Advanced Computing Center (512) 471-8197 (direct) > The University of Texas at Austin (512) 475-9445 (fax) > http://www.tacc.utexas.edu boisseau@tacc.utexas.edu > ___________________________________________________________________ --- Borries Demeler, Ph.D. Assistant Professor The University of Texas Health Science Center at San Antonio Dept. of Biochemistry, MC 7760 7703 Floyd Curl Drive, San Antonio, Texas 78229-3901 Voice: 210-567-6592, Fax: 210-567-1136, Email: demeler@biochem.uthscsa.edu -------------- next part -------------- A non-text attachment was scrubbed... Name: TACC-overview-brief.ppt Type: application/octet-stream Size: 1743872 bytes Desc: Microsoft Office Document Url : http://biochem.uthscsa.edu/pipermail/ut-grid/attachments/20060104/3074fe50/TACC-overview-brief-0001.obj -------------- next part -------------- A non-text attachment was scrubbed... Name: TACC-hosting-policy.doc Type: application/octet-stream Size: 43520 bytes Desc: Microsoft Office Document Url : http://biochem.uthscsa.edu/pipermail/ut-grid/attachments/20060104/3074fe50/TACC-hosting-policy-0001.obj From grisell at uthscsa.edu Wed Jan 11 13:02:21 2006 From: grisell at uthscsa.edu (Ronald Grisell) Date: Wed Jan 11 13:02:45 2006 Subject: [Ut-grid] HiPCaT Conference at UTHSCSA Jan 27 In-Reply-To: <200601030158.k031wapi020457@biochem.uthscsa.edu> Message-ID: <000001c616e1$8d711950$434a6f81@win.uthscsa.edu> Bo, Sorry for the delay in responding -- we do have a development that seems appropriate for the conference. However, since it is new research and grant funding is at stake, I have been delayed in getting approval to talk about it. Actually, Dr. Arya and I mentioned this initiative at the TACC meeting, but we weren't sure if we should talk much about it. I will strive to get a presentation draft in the next day or so, and show it around, to get consensus agreement that we can say thus and so. FYI, this is the project we have been cooking up to try out on your cluster. It involves new (or at least advanced) diagnostic screening using both genetic and epidemiological data, but there have been some licensing questions for large or unlimited copies. At this point I am probably the best one to give the computer science side of the story, which should be an interesting talk for HiPCaT. -----Original Message----- From: ut-grid-bounces@biochem.uthscsa.edu [mailto:ut-grid-bounces@biochem.uthscsa.edu] On Behalf Of Borries Demeler Sent: Monday, January 02, 2006 7:59 PM To: ut-grid@biochem.uthscsa.edu Subject: [Ut-grid] HiPCaT Conference at UTHSCSA Jan 27 Dear Colleagues, Please mark your calendar: On January 27th we will be hosting the next HiPCaT conference (HiPCaT = High Performance Computing across Texas) right here at UTHSCSA. This meeting will provide us with an opportunity to showcase HPC initiatives at UTHSCSA and UTSA to our colleagues at other HiPCaT institutions. My hope is to generate interest and discussion for efforts that lead to grid computing implementations on the new TIGRE grid (Texas Internet Grid for Research and Education), which will run on the new LEARN backbone (LEARN = Lone Star Education and Research Network - I'm going nuts with all these acronyms! - a 10 GB ethernet network loop to facilitate grid computing and high-bandwidth data exchange). Here is your chance to present your ideas for a grid implementation of your application to the experts in the field, and to get valuable feedback. Right now, HiPCaT is looking for applications suitable for TIGRE implementation. We will have HPC experts from several Texas institutions present at this meeting, and they would like to know what we have in store. Even if you don't have a parallelized MPI application ready to go, but have some ideas on how your application may benefit from grid computing, I would like to recruit you as a speaker for this meeting. I would like to arrange several speakers for 15-20 minute presentations + 5 minute question/answer period. If you are interested to present a short talk about your compute-intensive application, please contact me soon so I can reserve a speaker slot for you. The conference will be held in the presidential conference room in the new administration building, and it will be broadcast on the AccessGrid. Please respond no later than 1/15 if you are interested to give a presentation. Thanks, -Borries --- Borries Demeler, Ph.D. Assistant Professor The University of Texas Health Science Center at San Antonio Dept. of Biochemistry, MC 7760 7703 Floyd Curl Drive, San Antonio, Texas 78229-3901 Voice: 210-567-6592, Fax: 210-567-1136, Email: demeler@biochem.uthscsa.edu _______________________________________________ Ut-grid mailing list Ut-grid@biochem.uthscsa.edu http://biochem.uthscsa.edu/mailman/listinfo/ut-grid From demeler at biochem.uthscsa.edu Tue Jan 17 16:12:53 2006 From: demeler at biochem.uthscsa.edu (Borries Demeler) Date: Tue Jan 17 16:13:01 2006 Subject: [Ut-grid] Jan 27th HIPCAT meeting Message-ID: <200601172212.k0HMCr1j004561@biochem.uthscsa.edu> Dear Colleagues, I have updated the website for the Jan 27th HIPCAT meeting. If you are listed as a speaker, please confirm the assigned speaking slot and title of your talk. If you would like to join parts or all of the meeting, please indicate via return mail so we can plan for that. We will also have an AccessGrid Videoconferencing broadcast available. If you would like to test your connection beforehand, please get in touch with Jeremy Mann (jeremy@biochem.uthscsa.edu, 567-2672). Thank you, -Borries --- Borries Demeler, Ph.D. Assistant Professor The University of Texas Health Science Center at San Antonio Dept. of Biochemistry, MC 7760 7703 Floyd Curl Drive, San Antonio, Texas 78229-3901 Voice: 210-567-6592, Fax: 210-567-1136, Email: demeler@biochem.uthscsa.edu From BPOLLOCK at uthscsa.edu Mon Jan 23 23:10:28 2006 From: BPOLLOCK at uthscsa.edu (Pollock, Bradley H) Date: Mon Jan 23 23:10:40 2006 Subject: [Ut-grid] Our presentation Jan 27th HIPCAT meeting Message-ID: <0B7E9AAA8764EE479A9D92545290432904D046D4@SAIGA.win.uthscsa.edu> Hi Borries: I do not want to mess up your scheduling, but would it be relative easy to change our presentation time until 11:10 AM or later? Zhiwei Wang was planning to present with me and he is going to be tied up from 9 - 11 AM that morning. If it is not an easy thing to do, then leave the schedule as is. I hope things are going smoothly. Please don't make any dramatic changes to accommodate this request. Thanks, Brad From demeler at biochem.uthscsa.edu Tue Jan 24 05:27:01 2006 From: demeler at biochem.uthscsa.edu (Borries Demeler) Date: Tue Jan 24 05:27:14 2006 Subject: [Ut-grid] Our presentation Jan 27th HIPCAT meeting In-Reply-To: <0B7E9AAA8764EE479A9D92545290432904D046D4@SAIGA.win.uthscsa.edu> Message-ID: <200601241127.k0OBR1h0016648@biochem.uthscsa.edu> > > Hi Borries: > > I do not want to mess up your scheduling, but would it be relative easy > to change our presentation time until 11:10 AM or later? Zhiwei Wang was > planning to present with me and he is going to be tied up from 9 - 11 AM > that morning. > > If it is not an easy thing to do, then leave the schedule as is. I hope > things are going smoothly. Please don't make any dramatic changes to > accommodate this request. I can see if Steve Harris can switch with you. But his slot is at 11:00, not 11:10. Do you want me to ask him? -Borries From harris at uthscsa.edu Tue Jan 24 14:04:35 2006 From: harris at uthscsa.edu (Harris, Stephen E) Date: Tue Jan 24 14:04:49 2006 Subject: [Ut-grid] Our presentation Jan 27th HIPCAT meeting Message-ID: <819189266B78D543A02D9D3956EE4F6C034A5DF2@addax.win.uthscsa.edu> HI Borries, I can trade with Brad. No problem. His talk is more relevant. I can keep my talk short and can even drop out with no problem. Then I could focus on my grant. But I am committed. Whatever you want to do. Steve Stephen E. Harris, PhD Professor Director of Research Department of Periodontics and Cellular and Structural Biology U. of Texas Health Science Center at San Antonio 7703 Floyd Curl Drive San Antonio, TX 78229 Email: harris@uthscsa.edu Phone: 210-567-3723 -----Original Message----- From: ut-grid-bounces@biochem.uthscsa.edu [mailto:ut-grid-bounces@biochem.uthscsa.edu] On Behalf Of Borries Demeler Sent: Tuesday, January 24, 2006 5:27 AM To: ut-grid@biochem.uthscsa.edu Subject: Re: [Ut-grid] Our presentation Jan 27th HIPCAT meeting > > Hi Borries: > > I do not want to mess up your scheduling, but would it be relative easy > to change our presentation time until 11:10 AM or later? Zhiwei Wang was > planning to present with me and he is going to be tied up from 9 - 11 AM > that morning. > > If it is not an easy thing to do, then leave the schedule as is. I hope > things are going smoothly. Please don't make any dramatic changes to > accommodate this request. I can see if Steve Harris can switch with you. But his slot is at 11:00, not 11:10. Do you want me to ask him? -Borries _______________________________________________ Ut-grid mailing list Ut-grid@biochem.uthscsa.edu http://biochem.uthscsa.edu/mailman/listinfo/ut-grid