#NEXUS [AH073199.nex; 7/31/99; A2high alignment. Revision notes at end.] Begin data; Dimensions ntax=28 nchar=5925; Format datatype=DNA interleave gap=- matchchar=.; Matrix [ ' 1550 ' ' ' ] L1MdA2 ACTTCTGCCA GGAGTCTGGT TCGAACACCA GATATCTGGG TACCTGCCTT L1md9 .t........ ....g.a... .......a.. .......... .....t..c. Tfnode1 t....g.... ....g-a... c.a..t..a. ........c. c....t..c. Ac4101a ..a....... .......... .......... .......... ....ct..c. Ac5240a ..a....... .......... .......... .......... ....ct..c. Ac6289a .......... ......c... ....t..... .......... .....ta.c. Ac5413b .......... ......c... ..a....... ......-... .....t..c. Ac3996b t....a.... ....g-a... c.a....... ....a...t. c....t..c. Ac2406a t....a.... ....g-a... c.a....... ....a...t. c....t..c. Muspr ---------- ---------- ---------- ---------- ---------- Ac2406b ---------- ---------- ---------- ---------- ---------- Muska ---------- ---------- ---------- ---------- ---------- Dicon ---------- ---------- ---------- ---------- ---------- Ac4096a .......... .......... .......... .......... ........c. Af7574a ---------- ---------- ---------- ---------- ---------- Af91216a .......... .......... .......... .......... ........c. Ac004405b .......... .......... .......... .......... ........c. Af21335a .......... .......... .......... .......... ........c. Ac3997a .......... .......... .......... .......... ........c. Ac3019a ---------- ---------- ---------- ---------- ---------- Mmbam ---------- ---------- ---------- ---------- ---------- Mmcon ---------- ---------- ---------- ---------- ---------- Y11668b ---------- ---------- ---------- ---------- ---------- Ac7049a ---------- ---------- ---------- ---------- ---------- Af21335b ---------- ---------- ---------- ---------- ---------- Mmae663c .......... .......... .......... .......... .......... Ac4399a .......... .......... .......... .......... .......... A2node1 .......... .......... .......... .......... .......... [ ' 1600 ' ' ' ] L1MdA2 GCAAGAAGAG AGCTTGCCTG CAGAGAATAC TCTGCCCACT GAAACTA--A L1md9 .......... .......... .......... .......... ....t..--. Tfnode1 .t....---. ........a. ......g.g. ....ag.... ......cag. Ac4101a .......... .......... .......... .......... .......--. Ac5240a .......... .......... .......... .......... .......--. Ac6289a .......... .......... .......... .......... .......--. Ac5413b .......... .......... .......... ...a...... .....c.--. Ac3996b .a....g... .......... ......c.g. ....a..... ......cag. Ac2406a .a....g... .....a.... ......c.g. ....a..... ......cag. Muspr ---------- ---------- ---------- ---------- ---------- Ac2406b ---------- ---------- ---------- ---------- ---------- Muska ---------- ---------- ---------- ---------- ---------- Dicon ---------- ---------- ---------- ---------- ---------- Ac4096a .......... .......... .......... .......... .......--. Af7574a ---------- ---------- ---------- ---------- ---------- Af91216a .......... .......... .......... .....t.... .......--. Ac004405b .......... .......... .......... .......... .......--. Af21335a .....g.... .....a.... .......... .......... .......--. Ac3997a .......... .......... .......... .......... .......--. Ac3019a ---------- ---------- ---------- ---------- ---------- Mmbam ---------- ---------- ---------- ---------- ---------- Mmcon ---------- ---------- ---------- ---------- ---------- Y11668b ---------- ---------- ---------- ---------- ---------- Ac7049a ---------- ---------- ---------- ---------- ---------- Af21335b ---------- ---------- ---------- ---------- ---------- Mmae663c .......... .......... .......... .......... .......--. Ac4399a .......... .......... .......... .......... .......--. A2node1 .......... .......... .......... .......... .......--. [ ' 1650 ' ' ' ] L1MdA2 GGAGAGTGCT ACCCTCC-AG GTCTGCTCAT AGAGGCTAAC AGAGTCACCT L1md9 ......a... .g.....c.. .......t.. .......... .......... Tfnode1 ......aatc tgt....c.. .......g.. ...c.g.... ...a.....a Ac4101a ......a... .......c.. .......t.. .....t.... .......... Ac5240a ......a... .......c.. .......... .....t.... .......... Ac6289a .......... .......c.. .......t.. .......... .......... Ac5413b .......... .......c.. .......t.. .......... .......... Ac3996b ......a... .gt....c.c .......g.. .....g.... .a.a...a.a Ac2406a ......a... .g.....c.c .......g.. .....g.... .a.ag..a.a Muspr ---------- ---------- ---------- ---------- ---------- Ac2406b ---------- ---------- ---------- ---------- ---------- Muska ---------- ---------- ---------- ---------- ---------- Dicon ---------- ---------- ---------- ---------- ---------- Ac4096a .......... .......-.. .......t.. .......... ........a. Af7574a ---------- ---------- ---------- ---------- ---------- Af91216a .......... g......-.. .......t.. .......... .......... Ac004405b .......... ...a...-.. .......t.. .......... .......... Af21335a .......... .......-.. .......t.. .......... .......... Ac3997a .......... .......-.. .......t.. .......... .......... Ac3019a ---------- ---------- ---------- ---------- ---------- Mmbam ---------- ---------- ---------- ---------- ---------- Mmcon ---------- ---------- ---------- ---------- ---------- Y11668b ---------- ---------- ---------- ---------- ---------- Ac7049a ---------- ---------- ---------- ---------- ---------- Af21335b ---------- ---------- ---------- ---------- ---------- Mmae663c .......... .......-.. .......t.. .......... .......... Ac4399a .......... .......-.. .......... .......... .......... A2node1 .......... .......-.. .......... .......... .......... [ ' 1700 ' ' ' ] L1MdA2 GAAGAACAAG CTCTTAACAG TGACAACTAA AACAGCTAGC TTCAGAGATT L1md9 .......... ......c... a........t .......... .......... Tfnode1 .........t ....a..... a.t......t ...ta...a. .c........ Ac4101a .....g...a .......... .........t .......... .......... Ac5240a .....g...a .......... .........t .......... .......... Ac6289a .......... .......g.. a........t .....t.... .......... Ac5413b ....t..... .......... a........t .......... .......... Ac3996b ..g......t ....a....a a........t ....a...a. .c.g...... Ac2406a ..g......t ....a....a a..a.....t ....a...a. .c........ Muspr ---------- ---------- ---------- ---------- ---------- Ac2406b ---------- ---------- ---------- ---------- ---------- Muska ---------- ---------- ---------- ---------- ---------- Dicon ---------- ---------- ---------- ---------- ---------- Ac4096a .......... .......... .......... .......... .......... Af7574a ---------- ---------- ---------- ---------- ---------- Af91216a .......... .......... .......... .......... .......... Ac004405b .......... .......... .......... .......... .......... Af21335a .......... .......... .......... .......... .......... Ac3997a .......... .......... .t........ .......... .......... Ac3019a ---------- ---------- ---------- ---------- ---------- Mmbam ---------- ---------- ---------- ---------- ---------- Mmcon ---------- ---------- ---------- ---------- ---------- Y11668b ---------- ---------- ---------- ---------- ---------- Ac7049a ---------- ---------- ---------- ---------- ---------- Af21335b ---------- ---------- ---------- ---------- ---------- Mmae663c .......... .......... .......... .......... .......... Ac4399a .......... .......... .......... .......... .......... A2node1 .......... .......... .......... .......... .......... [ ' 1750 ' ' ' ] L1MdA2 ACCAGATGGC GAAAGGCAAA CGTAAGAATC CTACTAACAG AAATCAAGAC L1md9 .........t .......... .......... .......... .......... Tfnode1 .......... ......t... ..g.g..... t......... g..c...... Ac4101a .........t .......... .a........ .......... .......... Ac5240a .........t .......... .a........ .......... .......... Ac6289a .......... .......... .......... .......... .......... Ac5413b .......... .......... .......... .......... .......... Ac3996b g......... ......t... .......... .......... g..c...... Ac2406a g........- a.....t... t......... .......... g..c...... Muspr ---------- ---------- ---------- ---------- ---------- Ac2406b ---------- ---------- ---------- ---------- ---------- Muska ---------- ---------- ---------- ---------- ---------- Dicon ---------- ---------- ---------- ---------- ---------- Ac4096a .......... .......... .......... .......... .......a.. Af7574a ---------- ---------- ---------- ---------- ---------- Af91216a .......... .......... .......... .......... .......... Ac004405b .......... .......... .......... .........a .......... Af21335a .......... .......... .......... .......... .........t Ac3997a .........t .......... .......... .........a .......... Ac3019a ---------- ---------- ---------- ---------- ---------- Mmbam ---------- ---------- ---------- ---------- ---------- Mmcon ---------- ---------- ---------- ---------- ---------- Y11668b ---------- ---------- ---------- ---------- ---------- Ac7049a ---------- ---------- ---------- ---------- ---------- Af21335b ---------- ---------- ---------- ---------- ---------- Mmae663c ........t. .......... .......... .......... .......... Ac4399a .......... .......... .......... .......... .......... A2node1 .......... .......... .......... .......... .......... [ ' 1800 ' ' ' ] L1MdA2 CACTCACCAT CATCAGAACG CAGCACTCCC ACCCCACCTA GTCCTGGGCA L1md9 .......... .......... .......... .......... .......... Tfnode1 .......... ..c......c ......a... ..tt.g..c. ....a...a. Ac4101a .......... .......... .......... .......... .......... Ac5240a .......... .......... .......... .......... .......... Ac6289a .......... .......... .......... .......... .......... Ac5413b .......... .......... .......... ........ag .......... Ac3996b .......... .........c .......... ..tt...ac. ....a..a.. Ac2406a .......... .........c .......... ..tt.gg.c. ....a..a.. Muspr ---------- ---------- ---------- ---------- ---------- Ac2406b ---------- ---------- ---------- ---------- ---------- Muska ---------- ---------- ---------- ---------- ---------- Dicon ---------- ---------- ---------- ---------- ---------- Ac4096a .......... .......... .......... .......... .......... Af7574a ---------- ---------- ---------- ---------- ---------- Af91216a .......... .......... .......... .......... .......... Ac004405b .......... ........t. .......... .......... .......... Af21335a .......... .......... .......... .......... .......... Ac3997a .......... .......... .......... .......... .......... Ac3019a ---------- ---------- ---------- ---------- ---------- Mmbam ---------- ---------- ---------- ---------- ---------- Mmcon ---------- ---------- ---------- ---------- ---------- Y11668b ---------- ---------- ---------- ---------- ---------- Ac7049a ---------- ---------- ---------- ---------- ---------- Af21335b ---------- ---------- ---------- ---------- ---------- Mmae663c .......... .......... .......... .......... .......... Ac4399a .......... .......... .......... .......... .......... A2node1 .......... .......... .......... .......... .......... [ ' 1850 ' ' ' ] L1MdA2 CCCCAACACA ACCGAAAATC TAGACCCAGA TTTAAAAACA TTTCTCATGA L1md9 .......... .......... .......... .......... .......... Tfnode1 .......... c.t..g..c. ......t... .......g.. .a........ Ac4101a .......... ....g..... .......... .......... .....t.... Ac5240a .......... ....g..... .......... .......... .....t.... Ac6289a .......... .......... .......... .......... .......... Ac5413b .......... .......... .......... .......... ...t...... Ac3996b t..t...... c.t.....gg ......tg.. .......g.. .......... Ac2406a t..t...... c.t.....cg ......tg.. .......g.. .......... Muspr ---------- ---------- ---------- ---------- ---------- Ac2406b ---------- ---------- ---------- ---------- ---------- Muska ---------- ---------- ---------- ---------- ---------- Dicon ---------- ---------- ---------- ---------- ---------- Ac4096a .......... .......... .......... .......... .......... Af7574a ---------- ---------- ---------- ---------- ---------- Af91216a .......... .......... .......... .......... .......... Ac004405b .......... .......... .......... .......... .......... Af21335a .......... .......... .......... .......... .......... Ac3997a .......... .......... .......... .......... .......... Ac3019a ---------- ---------- ---------- ---------- ---------- Mmbam ---------- ---------- ---------- ---------- ---------- Mmcon ---------- ---------- ---------- ---------- ---------- Y11668b ---------- ---------- ---------- ---------- ---------- Ac7049a ---------- ---------- ---------- ---------- ---------- Af21335b ---------- ---------- ---------- ---------- ---------- Mmae663c .......... .......... .......... .......... .......... Ac4399a .......... .......... .......... .......... .......... A2node1 .......... .......... .......... .......... .......... [ ' 1900 ' ' ' ] L1MdA2 TGATGATAGA GGACATCAAG AAGGACTTTC ATAAGTCACT TAAAGATTTA L1md9 .......... .......... .......... tc..a..... ......a... Tfnode1 .....g.... .......... .........a ....a..... ......aa.. Ac4101a .......... .......... .......... .......... ......a... Ac5240a .......... .......... .......... .......... ......a... Ac6289a .......... .......... .......... .......... ......a... Ac5413b g......... .......... .......... .......... ......a... Ac3996b .....g.... ..g...a... .....a...a ....c..... ...g..aa.. Ac2406a .....g.... ......a... .....a...a ....c..... ...g..aa.. Muspr ---------- ---------- ---------- ---------- ---------- Ac2406b ---------- ---------- ---------- ---------- ---------- Muska ---------- ---------- ---------- ---------- ---------- Dicon ---------- ---------- ---------- ---------- ---------- Ac4096a .......... .......... .......... .......... ......a... Af7574a ---------- ---------- ---------- ---------- ---------- Af91216a .......... .......... .......... .......... ......a... Ac004405b .......... .......... .......... .......... ......a... Af21335a .......... .......... .......... .......... ......a... Ac3997a .......... .......... .......... .ag....... ......a... Ac3019a ---------- ---------- ---------- ---------- ---------- Mmbam ---------- ---------- ---------- ---------- ---------- Mmcon ---------- ---------- ---------- ---------- ---------- Y11668b ---------- ---------- ---------- ---------- ---------- Ac7049a ---------- ---------- ---------- ---------- ---------- Af21335b ---------- ---------- ---------- ---------- ---------- Mmae663c .......... .......... .......... .......... ......a... Ac4399a .......... .......... .......... .......... ......a... A2node1 .......... .......... .......... .......... .......... [ ' 1950 ' ' ' ] L1MdA2 CAGGAGAGCA CTGCTAAAGA GTTACAGGCT CTTAAAGAAA AGCAGGAAAA L1md9 .......... .......... .........c .......... .......... Tfnode1 .......a.. .......... ......a.tc .......... .a........ Ac4101a .......... .......... .........c .......... .......... Ac5240a .......... .......... .........c .......... .......... Ac6289a .......... .......... ......aatc .......... .....a.... Ac5413b .......... .......... .........c .......... .......... Ac3996b .......a.. .......... ......a.tc .......... .a........ Ac2406a .......a.. .......... ......a.tc .......... .a........ Muspr ---------- ---------- ---------- ---------- ---------- Ac2406b ---------- ---------- ---------- ---------- ---------- Muska ---------- ---------- ---------- ---------- ---------- Dicon ---------- ---------- ---------- ---------- ---------- Ac4096a .......... .......... .........c .......... .......... Af7574a ---------- ---------- ---------- ---------- ---------- Af91216a .......... .......... .........c .......... .......... Ac004405b .......... .......... .........c .......... .......... Af21335a .......... .......... .........c .......... .......... Ac3997a .......... .......... .........c .......... .a........ Ac3019a ---------- ---------- ---------- ---------- ---------- Mmbam ---------- ---------- ---------- ---------- ---------- Mmcon ---------- ---------- ---------- ---------- ---------- Y11668b ---------- ---------- ---------- ---------- ---------- Ac7049a ---------- ---------- ---------- ---------- ---------- Af21335b ---------- ---------- ---------- ---------- ---------- Mmae663c .......... .......... .........c .......... .......... Ac4399a .......... .......... .........c .......... .......... A2node1 .......... .......... .......... .......... .......... [ ' 2000 a1970 a1980 a1990 ] L1MdA2 CACAGCCAAA CAGGT----- ---------- ---------- ---------- L1md9 ....a..... .....agaag tccttaaaga aaaacaggaa aacacatcca Tfnode1 ....at.... .....agaag tccttacaga aaaagaggaa aaaacataca Ac4101a ....a..... .....agaag tccttaaaga aaaacaggaa aacacatcca Ac5240a ....a..... .....agaag tccttaaaga aaaacaggaa aacacatcca Ac6289a .......... .....agaag tccttaaaga aaaacaggaa aacacatcca Ac5413b .......... .....agaag tccttaaaga aaaacaggaa aacacatcca Ac3996b ....a..... .....agaag tccttataga aaaacaggaa aacaaatcga Ac2406a ....a..... .....agaag tccttataga aaaacaggaa aacacatcca Muspr ---------- ---------- ---------- ---------- ---------- Ac2406b ---------- ---------- ---------- ---------- ---------- Muska ---------- ---------- ---------- ---------- ---------- Dicon ---------- ---------- ---------- ---------- ---------- Ac4096a .......... .....agaaa tcattaaaga aaaacaggaa aacacatcca Af7574a ---------- ---------- ---------- ---------- ---------- Af91216a .......... .....agaaa tcattaaaga aaaacaggaa aacacatcca Ac004405b .......... .....agaaa tcattaaaga aaaacaggaa aacacatcca Af21335a .......... .....agaaa tcattaaaga aaaacaggaa aacacatcca Ac3997a ....t..... .....----- ---------- ---------- ---------- Ac3019a ---------- ---------- ---------- ---------- ---------- Mmbam ---------- ---------- ---------- ---------- ---------- Mmcon ---------- ---------- ---------- ---------- ---------- Y11668b ---------- ---------- ---------- ---------- ---------- Ac7049a ---------- ---------- ---------- ---------- ---------- Af21335b ---------- ---------- ---------- ---------- ---------- Mmae663c .......... .....agaaa tcattaaaga aaaacaggaa aacacatcca Ac4399a .......... .....agaaa tcattaaaga aaaacaggaa aacacatcca A2node1 .......... .....----- ---------- ---------- ---------- [ a2000 ' ' ' 2040 ] L1MdA2 -------GAT GGAAATGAAC AAAACCATAC TAGAACTAAA AGGGGAAGTA L1md9 aacagat... .......... .......... .......... .a........ Tfnode1 aacaggt... .......... .......... ....c..... .a........ Ac4101a aacaggt... .......... .......... .......... .......... Ac5240a aacaggt... .......... .......... .......... .aa....... Ac6289a aacaggta.. .......... .......... .......... .a........ Ac5413b aacaggta.. .......... .......... .......... .a........ Ac3996b aacaggt... a......... .......... ....c..... .a........ Ac2406a aacaggt... a......... .......... ....c..... .a........ Muspr ---------- ---------- ---------- ---------- ---------- Ac2406b ---------- ---------- ---------- ---------- ---------- Muska ---------- ---------- ---------- ---------- ---------- Dicon ---------- ---------- ---------- ---------- ---------- Ac4096a aataggt... .......... .......... .......... .......... Af7574a ---------- ---------- ---------- ---------- ---------- Af91216a aacaggt... .......... .......... .......... .......... Ac004405b aacaggt... .......... .......... .......... .......... Af21335a aacaggt... .......... .......... .......... .......... Ac3997a -------... .......... .......... .......... .a........ Ac3019a ---------- ---------- ---------- ---------- ---------- Mmbam ---------- ---------- ---------- ---------- ---------- Mmcon ---------- ---------- ---------- ---------- ---------- Y11668b ---------- ---------- ---------- ---------- ---------- Ac7049a ---------- ---------- ---------- ---------- ---------- Af21335b ---------- ---------- ---------- ---------- ---------- Mmae663c aacaggt... .......... .......... .......... .......... Ac4399a aacaggt... .......... .......... .......... .......... A2node1 -------... .......... .......... .......... .......... [ 2050 ' ' ' ' ] L1MdA2 GACACAATAA AGAAAACCCA AAGCGAGGCA ACGCTGGAGA TAGAAACCCT L1md9 ..t....... .......... ....a..... ......a... .......... Tfnode1 .......... .......t.. .......... ..a..a.... .......... Ac4101a .......... .......t.. .......... .t........ .......... Ac5240a .......... .......t.. .......... .t........ .......... Ac6289a .......... .......... .......... .......... .......... Ac5413b ......g... .......... .......... .t........ .......... Ac3996b .......... ......tt.. ...t...... .t........ .......... Ac2406a c......... .......... ...t...... ..a....... .......... Muspr ---------- ---------- ---------- ---------- ---------- Ac2406b ---------- ---------- ---------- ---------- ---------- Muska ---------- ---------- ---------- ---------- ---------- Dicon ---------- ---------- ---------- ---------- ---------- Ac4096a .......... .......... ...t...... .......... .......... Af7574a ---------- ---------- ---------- ---------- ---------- Af91216a .......... .......... .......... .......... ......t... Ac004405b .......... .......... .......... .......... .......... Af21335a ........t. .......... .......... .......... .......... Ac3997a .......... .......... .......... .......... .......... Ac3019a ---------- ---------- ---------- ---------- ---------- Mmbam ---------- ---------- ---------- ---------- ---------- Mmcon ---------- ---------- ---------- ---------- ---------- Y11668b ---------- ---------- ---------- ---------- ---------- Ac7049a ---------- ---------- ---------- ---------- ---------- Af21335b ---------- ---------- ---------- ---------- ---------- Mmae663c .......... .......... .......... .......... .......... Ac4399a .......... .......... .......... .......... .......... A2node1 .......... .......... .......... .......... .......... [ 2100 ' ' ' ' ] L1MdA2 AGGAAAGAGA TCTGGAACCA TAGATGCGAG CATCAGCAAC AGAATACAAG L1md9 .......... .......... .......... .......... .......... Tfnode1 ........a. .......... .....tt... .......... .......... Ac4101a .......... .......... .....tt... .......... .......... Ac5240a .......... .......... .....tt... .......... .......... Ac6289a .......... .......... .......... .......... .......... Ac5413b .......... .......... .......... .......... .......... Ac3996b ........a. .......... .......c.. .......... .a........ Ac2406a ........a. .......... .......c.. .....a.... .......... Muspr ---------- ---------- ---------- ---------- ---------- Ac2406b ---------- ---------- ---------- ---------- ---------- Muska ---------- ---------- ---------- ---------- ---------- Dicon ---------- ---------- ---------- ---------- ---------- Ac4096a .......... .......... .......... .......... .......... Af7574a ---------- ---------- ---------- ---------- ---------- Af91216a .......... .......... .......... .......... .......... Ac004405b .......... .......... .......... .......... .......... Af21335a .......... .......... ......t... .......... .......... Ac3997a .......... .......... .......... .......... .......... Ac3019a ---------- ---------- ---------- ---------- ---------- Mmbam ---------- ---------- ---------- ---------- ---------- Mmcon ---------- ---------- ---------- ---------- ---------- Y11668b ---------- ---------- ---------- ---------- ---------- Ac7049a ---------- ---------- ---------- ---------- ---------- Af21335b ---------- ---------- ---------- ---------- ---------- Mmae663c .......... .......... .......... .......... .......... Ac4399a .......... .......... .......... .......... .......... A2node1 .......... .......... .......... .......... .......... [ 2150 ' ' ' ' ] L1MdA2 AAATGGAAGA GAGAATCTCA GGTGCAGAAG ATTCCATAGA GAACATCGAC L1md9 .......... .......... .......... .......... .......a.. Tfnode1 .g........ .......... .......... .......... ........g. Ac4101a .......... .......... ..c....... .......... ........g. Ac5240a .......... .......... ..c....... .......... ........g. Ac6289a .......... .......... .......... .......... .......... Ac5413b .......... .......... .......... .......... ...t...... Ac3996b .g........ .......... .......... .......... ........g. Ac2406a .g........ .......... .......... .......... ........g. Muspr ---------- ---------- ---------- ---------- ---------- Ac2406b ---------- ---------- ---------- ---------- ---------- Muska ---------- ---------- ---------- ---------- ---------- Dicon ---------- ---------- ---------- ---------- ---------- Ac4096a .......... .......... .......... .......... .......... Af7574a ---------- ---------- ---------- ---------- ---------- Af91216a .......... .......... .......... .......... .......... Ac004405b .......... .......... .......... .......... .......... Af21335a .......... .......... .......... .......... .......... Ac3997a .......... .......... .......... .......... .......... Ac3019a ---------- ---------- ---------- ---------- ---------- Mmbam ---------- ---------- ---------- ---------- ---------- Mmcon ---------- ---------- ---------- ---------- ---------- Y11668b ---------- ---------- ---------- ---------- ---------- Ac7049a ---------- ---------- ---------- ---------- ---------- Af21335b ---------- ---------- ---------- ---------- ---------- Mmae663c .......... .......... .......... .c........ ...a...... Ac4399a .......... .......... .......... .......... .......... A2node1 .......... .......... .......... .......... .......... [ 2200 ' ' ' ' ] L1MdA2 ACAACAGTCA AAGAAAATAC AAAATGCAAA AGGATCCTAA CTCAAAACAT L1md9 .......... .......... .......... .......... .......t.. Tfnode1 ......a... ........gg .......... .a........ .......t.. Ac4101a ......ag.. ....t..... .......... .a.t...... ..a....... Ac5240a ......ag.. ....t..... .......... .a.t...... ..a....... Ac6289a .......... .......... .......... ......g... .......... Ac5413b .......... .......... .........t .......... .......... Ac3996b .....ga... ........gg .......... .a........ .......... Ac2406a ......a... ........gg .......... .aa....... .......... Muspr ---------- ---------- ---------- ---------- ---------- Ac2406b ---------- ---------- ---------- ---------- ---------- Muska ---------- ---------- ---------- ---------- ---------- Dicon ---------- ---------- ---------- ---------- ---------- Ac4096a .......... .......... .......... .......... .......... Af7574a ---------- ---------- ---------- ---------- ---------- Af91216a .......... .......... .......... .......... .......... Ac004405b .......... .......... .......... .......... .......... Af21335a .......... .......... .......... .......... .........g Ac3997a .......... .......... .......... .......... .......... Ac3019a ---------- ---------- ---------- ---------- ---------- Mmbam ---------- ---------- ---------- ---------- ---------- Mmcon ---------- ---------- ---------- ---------- ---------- Y11668b ---------- ---------- ---------- ---------- ---------- Ac7049a ---------- ---------- ---------- ---------- ---------- Af21335b ---------- ---------- ---------- ---------- ---------- Mmae663c .......... .......... .......... .......... .......... Ac4399a .......... .......... .......... .......... .......... A2node1 .......... .......... .......... .......... .......... [ 2250 ' ' ' ' ] L1MdA2 CCAGGTAATC CAGGACACAA TGAGAAGACC AAACCTACGG ATAATAGGAA L1md9 -....a.... .......... .......... .......... ......a..g Tfnode1 .....a.... .......... .a........ ....g..... .........g Ac4101a .....a.... .......... .......... .......... .......... Ac5240a .....a.... .......... .......... .......... .......... Ac6289a .....a.... .......... .......... .......... .......... Ac5413b .....a.... .......... .......... .........c ...g.....g Ac3996b .....a.... .......... .......... .........c .........g Ac2406a .....a.... .......... .......... .......t.. .........g Muspr ---------- ---------- ---------- ---------- ---------- Ac2406b ---------- ---------- ---------- ---------- ---------- Muska ---------- ---------- ---------- ---------- ---------- Dicon ---------- ---------- ---------- ---------- ---------- Ac4096a .......... .......... .......... .......... .......... Af7574a ---------- ---------- ---------- ---------- ---------- Af91216a .......... .......... .......... .......... .......... Ac004405b .......... .......... .......... .......... .......... Af21335a t......... .......... .......... .......... .......... Ac3997a .......... .......... .......... .......... .......... Ac3019a ---------- ---------- ---------- ---------- ---------- Mmbam ---------- ---------- ---------- ---------- ---------- Mmcon ---------- ---------- ---------- ---------- ---------- Y11668b ---------- ---------- ---------- ---------- ---------- Ac7049a ---------- ---------- ---------- ---------- ---------- Af21335b ---------- ---------- ---------- ---------- ---------- Mmae663c .......... .......... .......... ........a. .......... Ac4399a .......... .......... .......... .......... .......... A2node1 .......... .......... .......... .......... .......... [ 2300 ' ' ' ' ] L1MdA2 TTGATGAGAA TGAAGATTTT CAACTTAAAG GGCCAGCTAA TATCTTCAAC L1md9 .......... .......... .......... .......... .......... Tfnode1 .g........ .......... .....c.... .t.....a.. c......... Ac4101a .......... .......... .......... .a........ .......... Ac5240a .......... .......... .......... .a........ .......... Ac6289a ....cc.... .......... .......... .......... .......... Ac5413b .g........ .......... .....c.... .a.....a.. c......... Ac3996b .g........ .......... .....c.... .a.....a.. c......... Ac2406a .ga....... .......... .....c.... .a.....a.. c......... Muspr ---------- ---------- ---------- ---------- ---------- Ac2406b ---------- ---------- ---------- ---------- ---------- Muska ---------- ---------- ---------- ---------- ---------- Dicon ---------- ---------- ---------- ---------- ---------- Ac4096a .......... .......... .......... .......... .......... Af7574a ---------- ---------- ---------- ---------- ---------- Af91216a .......... .......... .......... .......... .......... Ac004405b .......... .......... .......... .......... .......... Af21335a .......... .......... .......... .......... .......... Ac3997a .......... .......... .......... .......... .......... Ac3019a ---------- ---------- ---------- ---------- ---------- Mmbam ---------- ---------- ---------- ---------- ---------- Mmcon ---------- ---------- ---------- ---------- ---------- Y11668b ---------- ---------- ---------- ---------- ---------- Ac7049a ---------- ---------- ---------- ---------- ---------- Af21335b ---------- ---------- ---------- ---------- ---------- Mmae663c .......... .......... .......... .......... .......... Ac4399a .......... .......... .......... .......... .......... A2node1 .......... .......... .......... .......... .......... [ 2350 ' ' ' ' ] L1MdA2 AAAATAATAG AAGAAAACTT CCCAAACATA AAAAAAGAGA TGCCCATGAT L1md9 .......... .......... .......... ..g....... .......... Tfnode1 .....t..t. .......... ......tc.. ..g..t.... ...at....a Ac4101a .......... .......... .......... ..g.....a. .......... Ac5240a .......... .......... .......... ..g.....a. .......... Ac6289a .......... .......... .......... ..g....... .......... Ac5413b .......at. .......... .......... ..g....... .......... Ac3996b .....t..t. .......... ......tc.. ..g....... .........a Ac2406a .....t..t. .......... ......tc.. ..c....... .........a Muspr ---------- ---------- ---------- ---------- ---------- Ac2406b ---------- ---------- ---------- ---------- ---------- Muska ---------- ---------- ---------- ---------- ---------- Dicon ---------- ---------- ---------- ---------- ---------- Ac4096a .......... .......... .......... .......... .......... Af7574a ---------- ---------- ---------- ---------- ---------- Af91216a .......... .......... .......... .......... .......... Ac004405b .......... .......... .......... .......... .......... Af21335a .....t..t. .......... .......... .......... .......... Ac3997a .......... .......... .......... ..g....... ..g....... Ac3019a ---------- ---------- ---------- ---------- ---------- Mmbam ---------- ---------- ---------- ---------- ---------- Mmcon ---------- ---------- ---------- ---------- ---------- Y11668b ---------- ---------- ---------- ---------- ---------- Ac7049a ---------- ---------- ---------- ---------- ---------- Af21335b ---------- ---------- ---------- ---------- ---------- Mmae663c .......... .......... .......... .......... .......... Ac4399a .......... .......... .......... .......... .......... A2node1 .......... .......... .......... .......... .......... [ 2400 ' ' ' ' ] L1MdA2 CATACAAGAA GCATACAGAA CTCCAAATAG ACTGGACCAG AAAAGAAATT L1md9 .......... ..c....a.. .........a .......... .......... Tfnode1 .......... ..c....... .......... .......... .......... Ac4101a .......... ..c....... .......... .......... .......... Ac5240a .......... ..c....... .......... .......... .......... Ac6289a .......... ..c....... ...a...... .......... .......... Ac5413b .......... ..c....... .......... .......... ........g. Ac3996b .......... ..c....... .......... .......... .......... Ac2406a ....t..... ..c....... .......... .......... .......... Muspr ---------- ---------- ---------- ---------- ---------- Ac2406b ---------- ---------- ---------- ---------- ---------- Muska ---------- ---------- ---------- ---------- ---------- Dicon ---------- ---------- ---------- ---------- ---------- Ac4096a .........g ..c....... .......... .......... .......... Af7574a ---------- ---------- ---------- ---------- ---------- Af91216a .......... ..c....... .......... .......... .......... Ac004405b .......... .......... .......... .......... .......... Af21335a .......... ..c....... .......... .......... .......... Ac3997a .......... ..c....... .......... .......... .......... Ac3019a ---------- ---------- ---------- ---------- ---------- Mmbam ---------- ---------- ---------- ---------- ---------- Mmcon ---------- ---------- ---------- ---------- ---------- Y11668b ---------- ---------- ---------- ---------- ---------- Ac7049a ---------- ---------- ---------- ---------- ---------- Af21335b ---------- ---------- ---------- ---------- ---------- Mmae663c .......... ..c....... .......... .......... .......... Ac4399a .......... ..c....... .......... .......... .......... A2node1 .......... .......... .......... .......... .......... [ 2450 ' ' ' ' ] L1MdA2 CCTCCCGACA CATAATAATC AGAACAACAA ATGCACTAAA TAAAGATAGA L1md9 ......a... .......... .......... .......... ......g... Tfnode1 .......... .......... ......t... .......... .......... Ac4101a .......... .......... .......a.. .......... .......... Ac5240a .......... ....-..... .......a.. .......... .......... Ac6289a .......... .......... .......... .......... .......... Ac5413b .......... .......... .......... .......... .......... Ac3996b .......... .......... ......t... .......... .......... Ac2406a .......... .......... ......t... .......t.. .......... Muspr ---------- ---------- ---------- ---------- ---------- Ac2406b ---------- ---------- ---------- ---------- ---------- Muska ---------- ---------- ---------- ---------- ---------- Dicon ---------- ---------- ---------- ---------- ---------- Ac4096a ......t... .......... .......... .......... .......... Af7574a ---------- ---------- ---------- ---------- ---------- Af91216a .......... .......... .......... .......... .......... Ac004405b .......... .......... .......... .......... .......... Af21335a .......... .......... .......... .......... .......... Ac3997a .......... .......... .......... .......... a......... Ac3019a ---------- ---------- ---------- ---------- ---------- Mmbam ---------- ---------- ---------- ---------- ---------- Mmcon ---------- ---------- ---------- ---------- ---------- Y11668b ---------- ---------- ---------- ---------- ---------- Ac7049a ---------- ---------- ---------- ---------- ---------- Af21335b ---------- ---------- ---------- ---------- ---------- Mmae663c .......... .......... .......... .......... .......... Ac4399a .......... .......... .......... .......... .......... A2node1 .......... .......... .......... .......... .......... [ 2500 ' ' ' ' ] L1MdA2 ATATTAAAAG CAGTAAGGGA GAAAGGTCAA GTAACATATA AAGGAAGGCC L1md9 .......... g......... .......... a......... .......... Tfnode1 ...c...... .......... a......... .......... ....c.a... Ac4101a .......... .......... .......... .......... .......... Ac5240a .......... .......... .......... .......... .......... Ac6289a .......... .......... .......... .......... .......... Ac5413b ........g. .......... .......... .......... .......... Ac3996b ...c...... .......... a...a..... .......... ....c.a... Ac2406a ...a...... .......... a......... .......... ....c.a... Muspr ---------- ---------- ---------- ---------- ---------- Ac2406b ---------- ---------- ---------- ---------- ---------- Muska ---------- ---------- ---------- ---------- ---------- Dicon ---------- ---------- ---------- ---------- ---------- Ac4096a .......... .......... .......... .......... .......... Af7574a ---------- ---------- ---------- ---------- ---------- Af91216a .......... .......... .......... .......... .......... Ac004405b .......... .......... .......... .......... .......... Af21335a .......... .......... .......... .......... .......... Ac3997a .......... .......... .......... .......... .......... Ac3019a ---------- ---------- ---------- ---------- ---------- Mmbam ---------- ---------- ---------- ---------- ---------- Mmcon ---------- ---------- ---------- ---------- ---------- Y11668b ---------- ---------- ---------- ---------- ---------- Ac7049a ---------- ---------- ---------- ---------- ---------- Af21335b ---------- ---------- ---------- ---------- ---------- Mmae663c .......... .......... .......... .......... .......... Ac4399a .......... .......... .......... .......... .......... A2node1 .......... .......... .......... .......... .......... [ 2550 ' ' ' ' ] L1MdA2 TATCAGAATT ACACCAGACT TTTCACCAGA GACTATGAAA GCCAGAAGAG L1md9 .......... .......... .......... .......... .......... Tfnode1 .......... ........t. .......... .......... .......... Ac4101a .......... .......... .......... .......... .......... Ac5240a .......... .......... .......... .......... .......... Ac6289a .......... .......... .......... .......... .......... Ac5413b .......... .a........ .......... .......... .......... Ac3996b .......... ........t. .......... .......... .......... Ac2406a .......... ........t. .....g.... .......... .......... Muspr ---------- ---------- ---------- ---------- ---------- Ac2406b ---------- ---------- ---------- ---------- ---------- Muska ---------- ---------- ---------- ---------- ---------- Dicon ---------- ---------- ---------- ---------- ---------- Ac4096a .......... .......... .......... .......... .......... Af7574a ---------- ---------- ---------- ---------- ---------- Af91216a .......... .......... .......... .......... .......... Ac004405b .......... .......... .......... .......... .......... Af21335a .....a.... .......... .......... .......... .......... Ac3997a .......... .......... .......... .......... .......... Ac3019a ---------- ---------- ---------- ---------- ---------- Mmbam ---------- ---------- ---------- ---------- ---------- Mmcon ---------- ---------- ---------- ---------- ---------- Y11668b ---------- ---------- ---------- ---------- ---------- Ac7049a ---------- ---------- ---------- ---------- ---------- Af21335b ---------- ---------- ---------- ---------- ---------- Mmae663c .......... .......... .......... .......... .......... Ac4399a .......... .......... .......... .......... .......... A2node1 .......... .......... .......... .......... .......... [ 2600 ' ' ' ' ] L1MdA2 CCTGGACAGA TGTTATACAG ACACTAAGAG AACACAAATG CCAGCCCAGG L1md9 .......... .......... .......... .......... .......... Tfnode1 .......... .......... .......... ........ct g......... Ac4101a .......... .......... .......... .......... ....t..... Ac5240a .......... .......... .......... .......... ....t..... Ac6289a .......... .......... .......... .......... .......... Ac5413b .......... .......... .......... .......... .......... Ac3996b .......... .a........ tt.......c .........t .......... Ac2406a .......... .......... .......... .........t .......... Muspr ---------- ---------- ---------- ---------- ---------- Ac2406b ---------- ---------- ---------- ---------- ---------- Muska ---------- ---------- ---------- ---------- ---------- Dicon ---------- ---------- ---------- ---------- ---------- Ac4096a .......... .......... .......... .......... .......... Af7574a ---------- ---------- ---------- ---------- ---------- Af91216a .......... .......... .a........ .......... .......... Ac004405b ........-. .......... .......... .......... .......... Af21335a .......... .......... .......... .......... .......... Ac3997a .......... .......... .......... ........c. .......... Ac3019a ---------- ---------- ---------- ---------- ---------- Mmbam ---------- ---------- ---------- ---------- ---------- Mmcon ---------- ---------- ---------- ---------- ---------- Y11668b ---------- ---------- ---------- ---------- ---------- Ac7049a ---------- ---------- ---------- ---------- ---------- Af21335b ---------- ---------- ---------- ---------- ---------- Mmae663c .......... .......... .......... .......... .......... Ac4399a .......... ......g... .......... .......... .......... A2node1 .......... .......... .......... .......... .......... [ 2650 ' ' ' ' ] L1MdA2 CTACTATACC CGGCCAAACT CTCAATTACC ATAGATGGAG AAACCAAAGT L1md9 .......... ........t. .......... .......... .......c.. Tfnode1 .......... .a........ ........t. .....g.... .......... Ac4101a .......... .......... .......... .......... .......... Ac5240a .......... .......... .......... .......... .......... Ac6289a .......... ..a....... .......... .......... .......... Ac5413b .......... ........t. .......... ......a... .......... Ac3996b .......... .a........ .......... .......... .......... Ac2406a .......... .a........ .......... .......... .......... Muspr ---------- ---------- ---------- ---------- ---------- Ac2406b ---------- ---------- ---------- ---------- ---------- Muska ---------- ---------- ---------- ---------- ---------- Dicon ---------- ---------- ---------- ---------- ---------- Ac4096a .......... .......... .......... ...t...... .......... Af7574a ---------- ---------- ---------- ---------- ---------- Af91216a .......... a......... .......... .......... .......... Ac004405b .......... .......... .......... .......... .......... Af21335a .......... .......... .......... .......... .......... Ac3997a .......... .......... .......... .......... .......... Ac3019a ---------- ---------- ---------- ---------- ---------- Mmbam ---------- ---------- ---------- ---------- ---------- Mmcon ---------- ---------- ---------- ---------- ---------- Y11668b ---------- ---------- ---------- ---------- ---------- Ac7049a ---------- ---------- ---------- ---------- ---------- Af21335b ---------- ---------- ---------- ---------- ---------- Mmae663c .......... .......... .......... .......... .......... Ac4399a .......... .......... .......... .......... .......... A2node1 .......... .......... .......... .......... .......... [ 2700 ' ' ' ' ] L1MdA2 ATTCCACGAC AAAACCAAGT TCACACAATA TCTTTCCACG AATCCAGCCC L1md9 .......a.. ........a. .......t.. ...c...... .......... Tfnode1 .......... ........a. ....g..t.. ...c...... .......... Ac4101a .......... ........a. .......... .......... .......... Ac5240a .......... ........a. .......... .......... .......... Ac6289a .......... ........a. .......... .......... .......... Ac5413b .......... ....aa..a. .......... .......... .......a.. Ac3996b .......... .....t..a. ....c..t.. ...c...... .......... Ac2406a ......t... .....t..a. ....c..t.g ...c...... .......... Muspr ---------- ---------- ---------- ---------- ---------- Ac2406b ---------- ---------- ---------- ---------- ---------- Muska ---------- ---------- ---------- ---------- ---------- Dicon ---------- ---------- ---------- ---------- ---------- Ac4096a .......... ....a...a. .......... .......... .......... Af7574a ---------- ---------- ---------- ---------- ---------- Af91216a .......... ....a...a. .......... .......... .......... Ac004405b .......... ....a...a. .......... .......... .......... Af21335a .......a.. ....a...a. .......... .......... .......... Ac3997a .......... ....a...a. .......... .......... .......... Ac3019a ---------- ---------- ---------- ---------- ---------- Mmbam ---------- ---------- ---------- ---------- ---------- Mmcon ---------- ---------- ---------- ---------- ---------- Y11668b ---------- ---------- ---------- ---------- ---------- Ac7049a ---------- ---------- ---------- ---------- ---------- Af21335b ---------- ---------- ---------- ---------- ---------- Mmae663c ....t.t.g. ........a. .......... .......... .........t Ac4399a .......... ....a...a. .......... .......... .......... A2node1 .......... .......... .......... .......... .......... [ 2750 ' ' ' ' ] L1MdA2 TTCAAAGGAT AATAACAGAA AAGAAACAAT ACAAGGACGG AAATCACGCC L1md9 .......... .......... .....g.... ........a. .......... Tfnode1 .......... .......... ..a..c.... .....a.... g..ca..... Ac4101a .......... .......... .....g.... ....aa.... .c.....a.. Ac5240a .......... .......... .....g.... ....aa.... .c.....a.. Ac6289a .......... .......... .....g.... .......... .......... Ac5413b .......... .......... .....g.... .......... .......... Ac3996b .......... .......... ..a..c.... .......... g..c...... Ac2406a .......... .......... ..a..c.... .......... g..c..t... Muspr ---------- ---------- ---------- ---------- ---------- Ac2406b ---------- ---------- ---------- ---------- ---------- Muska ---------- ---------- ---------- ---------- ---------- Dicon ---------- ---------- ---------- ---------- ---------- Ac4096a .......... .......... .....g.... .......... .......... Af7574a ---------- ---------- ---------- ---------- ---------- Af91216a .......... .......... .....g.... .....a.... .......... Ac004405b .......... .......... .....g.... .......... .......... Af21335a .......... .......... .....g.... .......... .......... Ac3997a .......... .......... .....g.... .......... .......... Ac3019a ---------- ---------- ---------- ---------- ---------- Mmbam ---------- ---------- ---------- ---------- ---------- Mmcon ---------- ---------- ---------- ---------- ---------- Y11668b ---------- ---------- ---------- ---------- ---------- Ac7049a ---------- ---------- ---------- ---------- ---------- Af21335b ---------- ---------- ---------- ---------- ---------- Mmae663c .......... .......... .....g.... .......t.. .......... Ac4399a .......... .......... .....g.... .......... .......... A2node1 .......... .......... .....g.... .......... .......... [ 2800 ' ' ' ' ] L1MdA2 CTAGAACAAC CAAGAAAGTA ATCATTCAAC AAACCAAAAA GAAGACAGCC L1md9 .........g .......... ...cc..... .......... .......... Tfnode1 ......a..a ......g... ...cc..... .....t.... .......... Ac4101a .........g .......... ...cc..... .......... t......... Ac5240a .........g .......... ...cc..... .......... t......... Ac6289a .........g .......... ...cc..... .......... .......... Ac5413b .........a .......... ...cc..... .......... .......... Ac3996b ......a..a ......ga.. ...cc..... ...a.t.... .......... Ac2406a ......a..a ......ga.. ...cc..... ...a.t.... .......... Muspr ---------- ---------- ---------- ---------- ---------- Ac2406b ---------- ---------- ---------- ---------- ---------- Muska ---------- ---------- ---------- ---------- ---------- Dicon ---------- ---------- ---------- ---------- ---------- Ac4096a .......... .t........ .......... g......... .......... Af7574a ---------- ---------- ---------- ---------- ---------- Af91216a .......... .......... .......... .......... .....a.... Ac004405b .......... .......... .......... .......... .......... Af21335a .......... .......... .......... .......... .......... Ac3997a .......... .......... .......... .......... .......... Ac3019a ---------- ---------- ---------- ---------- ---------- Mmbam ---------- ---------- ---------- ---------- ---------- Mmcon ---------- ---------- ---------- ---------- ---------- Y11668b ---------- ---------- ---------- ---------- ---------- Ac7049a ---------- ---------- ---------- ---------- ---------- Af21335b ---------- ---------- ---------- ---------- ---------- Mmae663c .......... .......... .......... .......... .......... Ac4399a .......... .......... .......... .......... .......... A2node1 .......... .......... .......... .......... .......... [ 2850 ' ' ' ' ] L1MdA2 ACAAGAACAG AATGCCAACT CTAACAACAA AAATAAAAGG GAGCAACAAT L1md9 .......... .......... .......... ......t... a..a...... Tfnode1 .......... .......c.. t.......t. ......c... a......... Ac4101a .......... .......... t...g..... ......c... a......... Ac5240a .......... .......... t...g..... ......c... a......... Ac6289a .......... .......... .......... .......... a......... Ac5413b .......... .......... .......... .......... a......... Ac3996b .......... .......... t......... .......... a......... Ac2406a .......... .......... t......... ......c... a......... Muspr ---------- ---------- ---------- ---------- ---------- Ac2406b ---------- ---------- ---------- ---------- ---------- Muska ---------- ---------- ---------- ---------- ---------- Dicon ---------- ---------- ---------- ---------- ---------- Ac4096a .......... .......... .......... .......... a......... Af7574a ---------- ---------- ---------- ---------- ---------- Af91216a .......... .......... .......... .......... a......... Ac004405b .......... .......... .......... .......... a......... Af21335a .......... .......... .......t.. .......... a......... Ac3997a .......... .......... .......... .......... a......... Ac3019a ---------- ---------- ---------- ---------- ---------- Mmbam ---------- ---------- ---------- ---------- ---------- Mmcon ---------- ---------- ---------- ---------- ---------- Y11668b ---------- ---------- ---------- ---------- ---------- Ac7049a ---------- ---------- ---------- ---------- ---------- Af21335b ---------- ---------- ---------- ---------- ---------- Mmae663c .......... .......... .......... .......... .......... Ac4399a .......... .......... .......... .......... .......... A2node1 .......... .......... .......... .......... .......... [ 2900 ' ' ' ' ] L1MdA2 TACTTTTCCT TAATATCTCT TAATATCAAT GGACTCAATT CCCCAAT-AA L1md9 .......... .......... .......... .......... t......-.. Tfnode1 .......... .......... ...c...... ..t.....c. .g.....-.. Ac4101a .......... .......... .......... ..t.....c. .......-.. Ac5240a .......... .......... .......... ..t.....c. .......-.. Ac6289a .......... .......... .......... .......... .......-.. Ac5413b .......... .......... .......... ..t....... .......-.. Ac3996b .......... .......... .......... ..t.....c. .......a.. Ac2406a .......... .......... .......... ..t.....c. .......-.. Muspr ---------- ---------- ---------- ---------- ---------- Ac2406b ---------- ---------- ---------- ---------- ---------- Muska ---------- ---------- ---------- ---------- ---------- Dicon ---------- ---------- ---------- ---------- ---------- Ac4096a .......... .......... .......... ..t.....c. .......-.. Af7574a ---------- ---------- ---------- ---------- ---------- Af91216a .......... .......... .......... .......... .......-.. Ac004405b .......... .......... .......... .......... .......-.. Af21335a .......... .......... .......... .......... .......-.. Ac3997a .......... .......... .......... .......... .......-.. Ac3019a ---------- ---------- ---------- ---------- ---------- Mmbam ---------- ---------- ---------- ---------- ---------- Mmcon ---------- ---------- ---------- ---------- ---------- Y11668b ---------- ---------- ---------- ---------- ---------- Ac7049a ---------- ---------- ---------- ---------- ---------- Af21335b ---------- ---------- ---------- ---------- ---------- Mmae663c .......... .......... .......... .......... .......-.. Ac4399a .....c.... .......... .......... .......... .......-.. A2node1 .......... .......... .......... .......... .......-.. [ 2950 ' ' ' ' ] L1MdA2 AAAGACATAG ACTAACAGAC TGGCTACACA AACAGGACCC AACATTCTGC L1md9 .......... .......... .......... .......... .......... Tfnode1 .......... .......a.. .......... ....a..... ......t... Ac4101a .......... .......... .......... .......... .......... Ac5240a .......... .......... .......... .......... .......... Ac6289a .......... .......... .......... .......... ......t... Ac5413b .......... .......... .......... .......... .......... Ac3996b .......... .......... .......... .......... .......... Ac2406a .....t.... .....a.... .......... .......... .......... Muspr ---------- ---------- ---------- ---------- ---------- Ac2406b ---------- ---------- ---------- ---------- ---------- Muska ---------- ---------- ---------- ---------- ---------- Dicon ---------- ---------- ---------- ---------- ---------- Ac4096a .......... .......... .......... .......... .......... Af7574a ---------- ---------- ---------- ---------- ---------- Af91216a .......... .......... .......... .......... .......... Ac004405b .......... .......... .......... .......... .......... Af21335a .......... .......... .......... ....a..... .......... Ac3997a .......... .......... .......... .......... .......... Ac3019a ---------- ---------- ---------- ---------- ---------- Mmbam ---------- ---------- ---------- ---------- ---------- Mmcon ---------- ---------- ---------- ---------- ---------- Y11668b ---------- ---------- ---------- ---------- ---------- Ac7049a ---------- ---------- ---------- ---------- ---------- Af21335b ---------- ---------- ---------- ---------- ---------- Mmae663c .......... .......... .......... .......... .......... Ac4399a .......... .......... .......... .......... .......... A2node1 .......... .......... .......... .......... .......... [ 3000 ' ' ' ' ] L1MdA2 TGCTTACAGG AAACCCATCT CAGGGAAAAA GACAGACACT ACCTCAGAGT L1md9 .......... .......... .......... .......... .......... Tfnode1 .......... ....t..... ...a...... ..t....... ........a. Ac4101a .......... .......... .......... .......... .......... Ac5240a .......... .......... .......... .......... .......... Ac6289a .......... .......... .......... .......... .......... Ac5413b .......... .......... .......... .......... .......... Ac3996b .......... .......... .......... t.t....... .......... Ac2406a .......... .......... .......... .......... .......... Muspr ---------- ---------- ---------- ---------- ---------- Ac2406b ---------- ---------- ---------- ---------- ---------- Muska ---------- ---------- ---------- ---------- ---------- Dicon ---------- ---------- ---------- ---------- ---------- Ac4096a .......... .......... .......... .......... .......... Af7574a ---------- ---------- ---------- ---------- ---------- Af91216a .......... .......... .......... .......... .......... Ac004405b .......... .......... .......... .......... .......... Af21335a .......... .......... .......... .......... .......... Ac3997a .......... .......... .......... .......... .......... Ac3019a ---------- ---------- ---------- ---------- ---------- Mmbam ---------- ---------- ---------- ---------- ---------- Mmcon ---------- ---------- ---------- ---------- ---------- Y11668b ---------- ---------- ---------- ---------- ---------- Ac7049a ---------- ---------- ---------- ---------- ---------- Af21335b ---------- ---------- ---------- ---------- ---------- Mmae663c .......... .......... .......... .......... ........a. Ac4399a .......... .......... .......... .......... .......... A2node1 .......... .......... .......... .......... .......... [ 3050 ' ' ' ' ] L1MdA2 GAAAGGCTGG AAAACAATTT T-CCAAGCAA ATGGACTGAA GAAACAAGCT L1md9 .......... .......... .-........ ....t..... ........g. Tfnode1 .......... .......... .-........ ....ta.... .........a Ac4101a .......... .......... .-........ ....t..... .......... Ac5240a .......... .......... .-........ ....t..... .......... Ac6289a .......... .......... .-........ ....t..... .......... Ac5413b .......... .......... .-........ ....t..... .......... Ac3996b .......... .......... .-........ ....t..... .......... Ac2406a .......... .......... .-........ ....t..... .......... Muspr ---------- ---------- ---------- ---------- ---------- Ac2406b ---------- ---------- ---------- ---------- ---------- Muska ---------- ---------- ---------- ---------- ---------- Dicon ---------- ---------- ---------- ---------- ---------- Ac4096a ........t. .......... .-........ .......... .......... Af7574a ---------- ---------- ---------- ---------- ---------- Af91216a a......... .......... .-........ .......... .......... Ac004405b .......... .......... .-........ .........g .......... Af21335a .......... .......... .-........ .......a.. .......... Ac3997a .....t.... .......... .-........ .......... .......... Ac3019a ---------- ---------- ---------- ---------- ---------- Mmbam ---------- ---------- ---------- ---------- ---------- Mmcon ---------- ---------- ---------- ---------- ---------- Y11668b ---------- ---------- ---------- ---------- ---------- Ac7049a ---------- ---------- ---------- ---------- ---------- Af21335b ---------- ---------- ---------- ---------- ---------- Mmae663c .......... .......... .t........ .......... .......... Ac4399a .......... .......... .-........ .......... .......... A2node1 .......... .......... .-........ .......... .......... [ 3100 ' ' ' ' ] L1MdA2 GGAGTAGCCA TTTTAATATC GGATAAAATC GACTTCCAAC CCAAAGTTAT L1md9 .......... ..c....... .......... .......... .......... Tfnode1 .......... .cc....... t.....g..t .......... .......c.. Ac4101a .......... .......... .....c.... .......... .......... Ac5240a .......... .......... .....c.... .......... .......... Ac6289a .......... ..c....... .......... .......... .......... Ac5413b .......... ..c....... .......... .......... .......... Ac3996b .......... .......... .......... .......... .......... Ac2406a .......... ..a....... .......... .......... .......... Muspr ---------- ---------- ---------- ---------- ---------- Ac2406b ---------- ---------- ---------- ---------- ---------- Muska ---------- ---------- ---------- ---------- ---------- Dicon ---------- ---------- ---------- ---------- ---------- Ac4096a .......... .......... .......... .......... .......... Af7574a ---------- ---------- ---------- ---------- ---------- Af91216a .......... .....g.... .......... .......... .......... Ac004405b .......... .......... .....c.... .......... .......... Af21335a .......... .......... .......... .......... .......... Ac3997a .......... .......... .......... .......... .......... Ac3019a ---------- ---------- ---------- ---------- ---------- Mmbam ---------- ---------- ---------- ---------- ---------- Mmcon ---------- ---------- ---------- ---------- ---------- Y11668b ---------- ---------- ---------- ---------- ---------- Ac7049a ---------- ---------- ---------- ---------- ---------- Af21335b ---------- ---------- ---------- ---------- ---------- Mmae663c .......... .......... .......... .......... .......... Ac4399a .......... .......... .......... .......... .......... A2node1 .......... .......... .......... .......... .......... [ 3150 ' ] L1MdA2 CAAAAAA--- ---------- ---------- ------GACA AGGAGGGACA L1md9 .......--- ---------- ---------- ------.... .......... Tfnode1 .......--- ---------- ---------- ------.... .......... Ac4101a .......--- ---------- ---------- ------.... .......... Ac5240a .......--- ---------- ---------- ------.... .......... Ac6289a .......aaa aaaaaaaaaa aaaaaaacca aaaaaaac.. .......... Ac5413b .......--- ---------- ---------- ------.... .......... Ac3996b .......--- ---------- ---------- ------.... .......... Ac2406a .......--- ---------- ---------- ------.... .......... Muspr ---------- ---------- ---------- ---------- ---------- Ac2406b ---------- ---------- ---------- ---------- ---------- Muska ---------- ---------- ---------- ---------- ---------- Dicon ---------- ---------- ---------- ---------- ---------- Ac4096a .......--- ---------- ---------- ------.... .......... Af7574a ---------- ---------- ---------- ---------- ---------- Af91216a .......--- ---------- ---------- ------.... .......... Ac004405b .......--- ---------- ---------- ------.... .......... Af21335a .......--- ---------- ---------- ------.... .......... Ac3997a .......--- ---------- ---------- ------.... .......... Ac3019a ---------- ---------- ---------- ---------- ---------- Mmbam ---------- ---------- ---------- ---------- ---------- Mmcon ---------- ---------- ---------- ---------- ---------- Y11668b ---------- ---------- ---------- ---------- ---------- Ac7049a ---------- ---------- ---------- ---------- ---------- Af21335b ---------- ---------- ---------- ---------- ---------- Mmae663c .......--- ---------- ---------- ------.... .......... Ac4399a .......--- ---------- ---------- ------.... .......... A2node1 .......--- ---------- ---------- ------.... .......... [ ' ' ' 3200 ' ] L1MdA2 CTTCATACTC ATCAAAGGTA AAATCCTCCA AGAGGAACTC TCAATTCTGA L1md9 .......... .......... ...a...... .......... .......... Tfnode1 ......t... .......... .......... .......... .......... Ac4101a .......... .......... .......... .......... a......... Ac5240a .......... .......... .......... .......... a......... Ac6289a .......... ..t....... .......... .......... .......... Ac5413b .......... .......... .......... .......... .......... Ac3996b .......... .......... .......... .......... a......... Ac2406a .......... .......... .......... .......... a.....t... Muspr ---------- ---------- ---------- ---------- ---------- Ac2406b ---------- ---------- ---------- ---------- ---------- Muska ---------- ---------- ---------- ---------- ---------- Dicon ---------- ---------- ---------- ---------- ---------- Ac4096a .......... .......... .......... .......... .......... Af7574a ---------- ---------- ---------- ---------- ---------- Af91216a .......... .......... .......... ........a. .......... Ac004405b .......... .......... .......... .......... .......... Af21335a .......... .......... .......... .......... .......... Ac3997a .......... .......... .......... .......... .......... Ac3019a ---------- ---------- ---------- ---------- ---------- Mmbam ---------- ---------- ---------- ---------- ---------- Mmcon ---------- ---------- ---------- ---------- ---------- Y11668b ---------- ---------- ---------- ---------- ---------- Ac7049a ---------- ---------- ---------- ---------- ---------- Af21335b ---------- ---------- ---------- ---------- ---------- Mmae663c .......... .......... .......... .......... .......... Ac4399a .......... .......... .......... .......... .......... A2node1 .......... .......... .......... .......... .......... [ ' ' ' 3250 ' ] L1MdA2 ATATCTACGC ACCAAATGCA AGGGCAGCCA CATTCATTAG AGACACTTTA L1md9 .......... t......... .......... .........a ...t...... Tfnode1 .......t.. t......a.. ..a....... ......c..a ...a...... Ac4101a .......... t......... .......... .........a .......... Ac5240a .......... t......... .......... .........a .......... Ac6289a .......... t......... .......... .......g.a .......... Ac5413b .......... t......... .......... .........a .....t.... Ac3996b .......... t......... .......... .........a ......c... Ac2406a .......... t.......a. .......... .........a ......c... Muspr ---------- ---------- ---------- ---------- ---------- Ac2406b ---------- ---------- ---------- ---------- ---------- Muska ---------- ---------- ---------- ---------- ---------- Dicon ---------- ---------- ---------- ---------- ---------- Ac4096a .......... .......... .......... .......... .......... Af7574a ---------- ---------- ---------- ---------- ---------- Af91216a .......... .......... .......... .......... .......... Ac004405b .......... t......... .......... .......... .......... Af21335a .......... .......... .......... .......... .......... Ac3997a .......... .......... .......... .......... .......... Ac3019a ---------- ---------- ---------- ---------- ---------- Mmbam ---------- ---------- ---------- ---------- ---------- Mmcon ---------- ---------- ---------- ---------- ---------- Y11668b ---------- ---------- ---------- ---------- ---------- Ac7049a ---------- ---------- ---------- ---------- ---------- Af21335b ---------- ---------- ---------- ---------- ---------- Mmae663c .......... .......... .......... .......... .......... Ac4399a .......... .......... .......... .......... .......... A2node1 .......... .......... .......... .......... .......... [ ' ' ' 3300 ' ] L1MdA2 GTAAAGCTCA AAGCATACAT TGCACCTCAC ACAATAATAG TGGGAGACTT L1md9 .......... .....c.... .......... ......g... .......... Tfnode1 .......... .....c.... ...g...... .......... .......... Ac4101a .......... .....c.tg. .......... .......... .......... Ac5240a .......... .....c.tg. .......... .......... .......... Ac6289a .......... ..a..c.... .......... .......... .......... Ac5413b .......... .....c.... .......... .......... .......... Ac3996b .......... .....c..g. .......... .......... .......-.. Ac2406a .......... .....c.... .......... .......... .......... Muspr ---------- ---------- ---------- ---------- ---------- Ac2406b ---------- ---------- ---------- ---------- ---------- Muska ---------- ---------- ---------- ---------- ---------- Dicon ---------- ---------- ---------- ---------- ---------- Ac4096a .......... .......... .......... .......a.. .......... Af7574a ---------- ---------- ---------- ---------- ---------- Af91216a .......... .......... .......... .......... .......... Ac004405b .......... .......t.. .......... ..g....... .......... Af21335a .......... .......... .....g.... .......... .......... Ac3997a .......... .......... .......... .......... .......... Ac3019a ---------- ---------- ---------- ---------- ---------- Mmbam ---------- ---------- ---------- ---------- ---------- Mmcon ---------- ---------- ---------- ---------- ---------- Y11668b ---------- ---------- ---------- ---------- ---------- Ac7049a ---------- ---------- ---------- ---------- ---------- Af21335b ---------- ---------- ---------- ---------- ---------- Mmae663c .......... .......... .......... .......... .......... Ac4399a .......... .......... .......... .......... .......... A2node1 .......... .......... .......... .......... .......... [ ' ' ' 3350 ' ] L1MdA2 CAACACACCA CTTTCTTCAA AGGACAGATC GTGGAAACAG AAACTAAACA L1md9 .......... .....a.... t......... .......... .......... Tfnode1 .......... .....ac... t......... a......... .......... Ac4101a .......... .....a.... t......... .......... .......... Ac5240a .......... .....a.... t......... .......... .......... Ac6289a .......... .....a.... t......... .......... .......... Ac5413b .......... .....a.... g......... .......... .......... Ac3996b .......... .....a.... t......... .......... .......... Ac2406a .......... .....a.... t......... t......... .......... Muspr ---------- ---------- ---------- ---------- ---------- Ac2406b ---------- ---------- ---------- ---------- ---------- Muska ---------- ---------- ---------- ---------- ---------- Dicon ---------- ---------- ---------- ---------- ---------- Ac4096a .......... .......... .......... .......... .......... Af7574a ---------- ---------- ---------- ---------- ---------- Af91216a .......... .......... .......... .......... .......... Ac004405b .......... .......... .......... .......... .......... Af21335a .......... .......... .......... .......... .......... Ac3997a .......... .......... .......... .......... .......... Ac3019a ---------- ---------- ---------- ---------- ---------- Mmbam ---------- ---------- ---------- ---------- ---------- Mmcon ---------- ---------- ---------- ---------- ---------- Y11668b ---------- ---------- ---------- ---------- ---------- Ac7049a ---------- ---------- ---------- ---------- ---------- Af21335b ---------- ---------- ---------- ---------- ---------- Mmae663c .......... .......... .........t .......... .......... Ac4399a .......... .......... .......... .......... .......... A2node1 .......... .......... .......... .......... .......... [ ' ' ' 3400 ' ] L1MdA2 GGGACACAGT GAAACTAACA GAAGTTATGA AACAAATGGA CCTGACAGAT L1md9 .......... .......... .......... .......... .g........ Tfnode1 ........c. .......... .....g.... .......... t......... Ac4101a .......... .......... .......... .......... .......... Ac5240a .......... .......... .......... .......... .......... Ac6289a .......... .......... .......... .......... .......... Ac5413b .......... .......... .......... .......... ...a...... Ac3996b .......... .......... .......a.. ..t....... .tg....... Ac2406a .......... .......... .......... .......... .......... Muspr ---------- ---------- ---------- ---------- ---------- Ac2406b ---------- ---------- ---------- ---------- ---------- Muska ---------- ---------- ---------- ---------- ---------- Dicon ---------- ---------- ---------- ---------- ---------- Ac4096a .......... .......... .......... .......... .......... Af7574a ---------- ---------- ---------- ---------- ---------- Af91216a .......... .......... .......... .......... .......... Ac004405b .......... .......... .......... .......... .......... Af21335a .......... .......... .......... .......... .......... Ac3997a .......... .......... ....c..... .......... .......... Ac3019a ---------- ---------- ---------- ---------- ---------- Mmbam ---------- ---------- ---------- ---------- ---------- Mmcon ---------- ---------- ---------- ---------- ---------- Y11668b ---------- ---------- ---------- ---------- ---------- Ac7049a ---------- ---------- ---------- ---------- ---------- Af21335b ---------- ---------- ---------- ---------- ---------- Mmae663c .......... .......... .......... .......... .t........ Ac4399a .......... .......... .......... .......... .......... A2node1 .......... .......... .......... .......... .......... [ ' ' ' 3450 ' ] L1MdA2 ATCTACAGAA CATTTTATCC TAAAACAAAA GGATATACCT TCTTCTCAGC L1md9 .......... .......... .......... .......... ......g... Tfnode1 .......... .......... .......... .......... .......... Ac4101a .......... .......... .......... .......... .......... Ac5240a .......... .......... .......... .......... .......... Ac6289a .......... .......... .......... .......... .......... Ac5413b .......... .......... .......... .......... .......... Ac3996b .......... ......t... .......... .......... .......... Ac2406a .......... .......... .......... .......... .......... Muspr ---------- ---------- ---------- ---------- ---------- Ac2406b ---------- ---------- ---------- ---------- ---------- Muska ---------- ---------- ---------- ---------- ---------- Dicon ---------- ---------- ---------- ---------- ---------- Ac4096a .......... .......... .......... .......... .......... Af7574a ---------- ---------- ---------- ---------- ---------- Af91216a .......... .......... .......... .......... .......... Ac004405b .......... .......... .......... .......... .......... Af21335a .......... t......... .......... .......... .......... Ac3997a .......... .......c.. .......... .......... .......... Ac3019a ---------- ---------- ---------- ---------- ---------- Mmbam ---------- ---------- ---------- ---------- ---------- Mmcon ---------- ---------- ---------- ---------- ---------- Y11668b ---------- ---------- ---------- ---------- ---------- Ac7049a ---------- ---------- ---------- ---------- ---------- Af21335b ---------- ---------- ---------- ---------- ---------- Mmae663c .......... .......... .......... .......... .......... Ac4399a .......... .......... .......... .......... .......... A2node1 .......... .......... .......... .......... .......... [ ' ' ' 3500 ' ] L1MdA2 ACCTCACGGG ACCTTCTCCA AAATTGACCA TATAATTGGT CACAAAACAG L1md9 .......... .......... .......... ......a... .t........ Tfnode1 ......t..t .......... .......... c.....a... ......t... Ac4101a g......... .......... .......... .......... .......... Ac5240a g......... .......... .......... .......... .......... Ac6289a .......... .......... .......... .......... .......... Ac5413b .......... .......... .......... .......... ......t... Ac3996b .......... .......... ...c...... .......... .......... Ac2406a .......... .......... .......... .......... .......... Muspr ---------- ---------- ---------- ---------- ---------- Ac2406b ---------- ---------- ---------- ---------- ---------- Muska ---------- ---------- ---------- ---------- ---------- Dicon ---------- ---------- ---------- ---------- ---------- Ac4096a .......... .......... .......... .......... .......... Af7574a ---------- ---------- ---------- ---------- ---------- Af91216a .......... .......... .......... .......... .......... Ac004405b .......... .......... ...c...... .......... .......... Af21335a ......t... .......... .......... .......... .......... Ac3997a .......... .......... .......... .......... .......... Ac3019a ---------- ---------- ---------- ---------- ---------- Mmbam ---------- ---------- ---------- ---------- ---------- Mmcon ---------- ---------- ---------- ---------- ---------- Y11668b ---------- ---------- ---------- ---------- ---------- Ac7049a ---------- ---------- ---------- ---------- ---------- Af21335b ---------- ---------- ---------- ---------- ---------- Mmae663c .......... .......... .......... .......... .......... Ac4399a .......... .......... .......... .......... .......... A2node1 .......... .......... .......... .......... .......... [ ' ' ' 3550 ' ] L1MdA2 GCCTCAATAG ATACAAAAAT ATTGAAATTG TCCCATGTAT CCTATCAGAC L1md9 .......c.. ........g. .......... .......c.. .......... Tfnode1 .......c.. ..t....... .......... .......... .........t Ac4101a .......c.. .......... .......... ...t...... .......... Ac5240a .......c.. .......... .......... ...t...... .......... Ac6289a .......c.. .......... .......... .......... .......... Ac5413b .......c.. .......... .......... .......... .......... Ac3996b t......a.. .......... .......... .......... .....g.... Ac2406a ..g....c.. .......... ...a...... ....t..... .........t Muspr ---------- ---------- ---------- ---------- ---------- Ac2406b ---------- ---------- ---------- ---------- ---------- Muska ---------- ---------- ---------- ---------- ---------- Dicon ---------- ---------- ---------- ---------- ---------- Ac4096a .......... .......... .......... .......... .......... Af7574a ---------- ---------- ---------- ---------- ---------- Af91216a .......... .......... .......... .......... .......... Ac004405b .......... .......... .......... .......... .......... Af21335a .......... .......... .......... .......... .......... Ac3997a .......... .......... .......... .......... .......... Ac3019a ---------- ---------- ---------- ---------- ---------- Mmbam ---------- ---------- ---------- ---------- ---------- Mmcon ---------- ---------- ---------- ---------- ---------- Y11668b ---------- ---------- ---------- ---------- ---------- Ac7049a ---------- ---------- ---------- ---------- ---------- Af21335b ---------- ---------- ---------- ---------- ---------- Mmae663c .......... .......... .......... .......... .......... Ac4399a .......... .......... .......... .......... .......... A2node1 .......... .......... .......... .......... .......... [ ' ' ' 3600 ' ] L1MdA2 CACCATGGCC TAAGACTGAT CTTCAATAAC AACATAAATA ATGGAAAGCC L1md9 .....ca... .......... ......c..t .......... ........t. Tfnode1 .......ca. ....g..... .......... ..a....... .ca....... Ac4101a .......... .......... .......... .......... .......... Ac5240a .......... .......... .......... .......... .......... Ac6289a ...t...... .......... .......... .......... .c........ Ac5413b .......... .......... .......... .......... .......... Ac3996b .......... .......... .......... .......... .c........ Ac2406a .......... .......... .......... .......... .......... Muspr ---------- ---------- ---------- ---------- ---------- Ac2406b ---------- ---------- ---------- ---------- ---------- Muska ---------- ---------- ---------- ---------- ---------- Dicon ---------- ---------- ---------- ---------- ---------- Ac4096a .......... .......... .......... .......... .......... Af7574a ---------- ---------- ---------- ---------- ---------- Af91216a .......... ....g..... .......... .......... .......... Ac004405b .......... .......... .......... .......... .......... Af21335a .......... .......... .......... .......... .......... Ac3997a .......... .......... .......... .......... .......... Ac3019a ---------- ---------- ---------- ---------- ---------- Mmbam ---------- ---------- ---------- ---------- ---------- Mmcon ---------- ---------- ---------- ---------- ---------- Y11668b ---------- ---------- ---------- ---------- ---------- Ac7049a ---------- ---------- ---------- ---------- ---------- Af21335b ---------- ---------- ---------- ---------- ---------- Mmae663c .......... .......... .......... .......... .......... Ac4399a .......... .......... .......... .......... .......... A2node1 .......... .......... .......... .......... .......... [ ' ' ' 3650 ' ] L1MdA2 AACATTCACG TGGAAACTGA ATAACACTCT TCTCAATGAT ACCTTGGTCA L1md9 .......... .......... .c........ .......... .......... Tfnode1 .........a .......... .c........ .......... .......... Ac4101a .......... .......... .c........ .t........ .......... Ac5240a .......... .......... .c........ .t........ .......... Ac6289a .........a .......... .c........ .......... .......... Ac5413b .......... .......... .c....g... .......... .......... Ac3996b ......a... .......... .c........ .t........ .......... Ac2406a .......... .......... .c........ .......... .......... Muspr ---------- ---------- ---------- ---------- ---------- Ac2406b ---------- ---------- ---------- ---------- ---------- Muska ---------- ---------- ---------- ---------- ---------- Dicon ---------- ---------- ---------- ---------- ---------- Ac4096a .......... .......... .......... .......... .......... Af7574a ---------- ---------- ---------- ---------- ---------- Af91216a .......... .......... .......... .......... .......... Ac004405b .......... .......... .......... .......... .......... Af21335a .......... .......... .......... .......... .......... Ac3997a .........a .......... .......... .......... .......... Ac3019a ---------- ---------- ---------- ---------- ---------- Mmbam ---------- ---------- ---------- ---------- ---------- Mmcon ---------- ---------- ---------- ---------- ---------- Y11668b ---------- ---------- ---------- ---------- ---------- Ac7049a ---------- ---------- ---------- ---------- ---------- Af21335b ---------- ---------- ---------- ---------- ---------- Mmae663c .......... .......... .......... .......... .......... Ac4399a .......... .......... .......... .......... .......... A2node1 .......... .......... .......... .......... .......... [ ' ' ' 3700 ' ] L1MdA2 AGGAAGGAAT AAAGAAAGAA ATTAAAGACT TTTTAGAGTT TAATGAAAAT L1md9 .......... .......... .......... .......... .......... Tfnode1 .......... .......... .......... .......... .......... Ac4101a .......... .......... .......... .......... .......... Ac5240a .......... .......... .......... .......... .......... Ac6289a .......... .......... .........c .......... .......... Ac5413b .......... .......... .......... .......... .......... Ac3996b .a........ .......... .......... .......... .......... Ac2406a .......... .g........ .......... .......... .......... Muspr ---------- ---------- ---------- ---------- ---------- Ac2406b ---------- ---------- ---------- ---------- ---------- Muska ---------- ---------- ---------- ---------- ---------- Dicon ---------- ---------- ---------- ---------- ---------- Ac4096a .......... .......... .........a .......... .......... Af7574a ---------- ---------- ---------- ---------- ---------- Af91216a .......... .......... .......... .......... .......... Ac004405b .......... .......... .......... .......... .......... Af21335a .......... .......... .......... .......... .......... Ac3997a .......... .......... .......... .......... .......... Ac3019a ---------- ---------- ---------- ---------- ---------- Mmbam ---------- ---------- ---------- ---------- ---------- Mmcon ---------- ---------- ---------- ---------- ---------- Y11668b ---------- ---------- ---------- ---------- ---------- Ac7049a ---------- ---------- ---------- ---------- ---------- Af21335b ---------- ---------- ---------- ---------- ---------- Mmae663c .......... .......... .......... .......... .......... Ac4399a .......... .......... .......... .......... .......... A2node1 .......... .......... .......... .......... .......... [ ' ' ' 3750 ' ] L1MdA2 GAAGCCACAA CGTACCCAAA CCTATGGGAC ACAATGAAAG CATTTCTAAG L1md9 .....t.... ......a... .......... .......... .......... Tfnode1 .......... .......... ...t...... .......... .......... Ac4101a .......... .......... .......... .......... .......... Ac5240a .......... .......... .......... .......... .......... Ac6289a .......... .a........ .......... .......... .......... Ac5413b .......... .......... ...t...... .......... .......... Ac3996b a......... .......... .......... .......... .......... Ac2406a .......... .......... ....g..... .......... .......... Muspr ---------- ---------- ---------- ---------- ---------- Ac2406b ---------- ---------- ---------- ---------- ---------- Muska ---------- ---------- ---------- ---------- ---------- Dicon ---------- ---------- ---------- ---------- ---------- Ac4096a .......... .......... .......... .......... .......... Af7574a ---------- ---------- ---------- ---------- ---------- Af91216a .......... .......... t......... .......... .......... Ac004405b .......... .......... .......... .......... .......... Af21335a .......... .......... .......... .......... .......... Ac3997a .......... .......... .......... .......... .......... Ac3019a ---------- ---------- ---------- ---------- ---------- Mmbam ---------- ---------- ---------- ---------- ---------- Mmcon ---------- ---------- ---------- ---------- ---------- Y11668b ---------- ---------- ---------- ---------- ---------- Ac7049a ---------- ---------- ---------- ---------- ---------- Af21335b ---------- ---------- ---------- ---------- ---------- Mmae663c .......... t......... .......... .......... ........g. Ac4399a .......... .......... .......... .......... .......... A2node1 .......... .......... .......... .......... .......... [ ' ' ' 3800 ' ] L1MdA2 AGGGAAACTC ATAGCGCTGA GTGCCTCCAA GAAGAAACGG GAGACAGCAC L1md9 .......... .....t.... .......... .......... ....g..... Tfnode1 .......... .....ta... ......t... ...a...... ....g..... Ac4101a .......... .....t.... .......... .......... ....g..... Ac5240a .......... .....t.... .......... .......... ....g..... Ac6289a .......... .c...t.... .......... .......... ....g..... Ac5413b .......... .....t.... .......... .......... ....g....t Ac3996b .......... .....t.... .......... .......... ....g..... Ac2406a .......... .....t.... .......... .......... ....g..... Muspr ---------- ---------- ---------- ---------- ---------- Ac2406b ---------- ---------- ---------- ---------- ---------- Muska ---------- ---------- ---------- ---------- ---------- Dicon ---------- ---------- ---------- ---------- ---------- Ac4096a .......... .....t.... .......... .......... .......... Af7574a ---------- ---------- ---------- ---------- ---------- Af91216a ...a...... ...t.t.... .......... .......... ....g..... Ac004405b .......... .......... .......... .......... .......... Af21335a .......... .....t.... .......... .......... .......... Ac3997a .......... .....t.... .......... .......... .......... Ac3019a ---------- ---------- ---------- ---------- ---------- Mmbam ---------- ---------- ---------- ---------- ---------- Mmcon ---------- ---------- ---------- ---------- ---------- Y11668b ---------- ---------- ---------- ---------- ---------- Ac7049a ---------- ---------- ---------- ---------- ---------- Af21335b ---------- ---------- ---------- ---------- ---------- Mmae663c .........t .....t.... .......... .......... .......... Ac4399a .......... .....t.... .......... .......g.. .......... A2node1 .......... .......... .......... .......... .......... [ ' ' ' 3850 ' ] L1MdA2 ATACTAGCAG CTTGACAACA CATCTAAAAG CCCTAGAAAA AAA-GGAAGC L1md9 .......... .......... .......... .t........ ...-...... Tfnode1 .......... .......... .......... .t........ ...-...... Ac4101a ...t...... .......... .......... .t........ ...-...... Ac5240a ...t...... .......... .......... .t........ ..--...... Ac6289a .......... ........a. .......... .t........ ...-...... Ac5413b .......... .......... .......... .t........ ...-...... Ac3996b .......... .......... .......... .t........ ...-a..... Ac2406a .......... .......... .........a .t........ ...-...... Muspr ---------- ---------- ---------- ---------- ---------- Ac2406b ---------- ---------- ---------- ---------- ---------- Muska ---------- ---------- ---------- ---------- ---------- Dicon ---------- ---------- ---------- ---------- ---------- Ac4096a .......... .......... .......... .......... ...-...... Af7574a ---------- ---------- ---------- ---------- ---------- Af91216a .......... .......... .......... .t........ ...-...... Ac004405b .......... .......... .......... .......... ...-...... Af21335a .......... .......... .......... .......... ...-...... Ac3997a .......... .......... .......... .......... ...-...... Ac3019a ---------- ---------- ---------- ---------- ---------- Mmbam ---------- ---------- ---------- ---------- ---------- Mmcon ---------- ---------- ---------- ---------- ---------- Y11668b ---------- ---------- ---------- ---------- ---------- Ac7049a ---------- ---------- ---------- ---------- ---------- Af21335b ---------- ---------- ---------- ---------- ---------- Mmae663c .......... .......... .......... .t........ ...a...... Ac4399a .......... .......... .......... .t........ ...-...... A2node1 .......... .......... .......... .......... ...-...... [ ' ' ' 3900 ' ] L1MdA2 AAATTCACCC AAGAGGAGTA GACGGCAGGA AATAATCAAA CTCAGGGGTG L1md9 ........g. .......... ..t....... .......... .......... Tfnode1 .......... .......... .......... .......... .......... Ac4101a .......... g......... .......... .......... .......... Ac5240a .......... g......... .......... .......... .......... Ac6289a .......... ..a....... ..a....... .......... .......... Ac5413b .......... .......... ..t....... .......... .......... Ac3996b .......... .......... ..a....... .......... .......... Ac2406a .......... .......... .......... .......... .......... Muspr ---------- ---------- ---------- ---------- ---------- Ac2406b ---------- ---------- ---------- ---------- ---------- Muska ---------- ---------- ---------- ---------- ---------- Dicon ---------- ---------- ---------- ---------- ---------- Ac4096a .......... .......... .......... .......... .......... Af7574a ---------- ---------- ---------- ---------- ---------- Af91216a .......... .......... .......... .......... .......... Ac004405b .......... .......... .......... .......... .......... Af21335a .......... .....a.... .......... .......... .......... Ac3997a .......... .......... .......... .......... .......... Ac3019a ---------- ---------- ---------- ---------- ---------- Mmbam ---------- ---------- ---------- ---------- ---------- Mmcon ---------- ---------- ---------- ---------- ---------- Y11668b ---------- ---------- ---------- ---------- ---------- Ac7049a ---------- ---------- ---------- ---------- ---------- Af21335b ---------- ---------- ---------- ---------- ---------- Mmae663c .......... .......... .......... .......... .......... Ac4399a .......... .......... .......... .......... .......... A2node1 .......... .......... .......... .......... .......... [ ' ' ' 3950 ' ] L1MdA2 AAATCAACCA AGTGGAAACA AGAAGAACTA TTCAAAGAAT TAACCAAACG L1md9 .......... .......... .......... .......... ........t. Tfnode1 .......... .......... .......... .......... .......... Ac4101a .......... .......... .......... .......... .......... Ac5240a .......... .......... .......... .......... .......... Ac6289a .......... .......... .......... .......... ........a. Ac5413b .......... ........t. .......t.. .......... .......... Ac3996b .......... .......... .......... .......... .......... Ac2406a .......... .......... .......... .......... ........t. Muspr ---------- ---------- ---------- ---------- ---------- Ac2406b ---------- ---------- ---------- ---------- ---------- Muska ---------- ---------- ---------- ---------- ---------- Dicon ---------- ---------- ---------- ---------- ---------- Ac4096a .......... .......... .......... .......... .......... Af7574a ---------- ---------- ---------- ---------- ---------- Af91216a .......... .......... .......... .......... .......... Ac004405b .......... .......... .......... .......... .......... Af21335a .......... .......... .a........ .......... .......... Ac3997a .......... .......... .......... .......... .......... Ac3019a ---------- ---------- ---------- ---------- ---------- Mmbam ---------- ---------- ---------- ---------- ---------- Mmcon ---------- ---------- ---------- ---------- ---------- Y11668b ---------- ---------- ---------- ---------- ---------- Ac7049a ---------- ---------- ---------- ---------- ---------- Af21335b ---------- ---------- ---------- ---------- ---------- Mmae663c .......... ....tt.... .......... .......... .......... Ac4399a .......... .......... .......... .......... .......... A2node1 .......... .......... .......... .......... .......... [ ' ' ' 4000 ' ] L1MdA2 AGGAGTTGGT TCTTTGAGAA AATCAACAAG ATAGATAAAC CCTTAGCTAG L1md9 .......... .......... .......... .......... .......... Tfnode1 .......... .......... .......... .......... .......... Ac4101a .......... .......... .......... .......... .......... Ac5240a .......... .......... .......... .......... .......... Ac6289a .......... .......... .......... .......... .g.......a Ac5413b ..t....... .......... .......... .......... .......... Ac3996b ........t. .t........ .......... .......... .......... Ac2406a .......... .......... .......... .......... .......... Muspr ---------- ---------- ---------- ---------- ---------- Ac2406b ---------- ---------- ---------- ---------- ---------- Muska ---------- ---------- ---------- ---------- ---------- Dicon ---------- ---------- ---------- ---------- ---------- Ac4096a .......... .......... .......... .......... .......... Af7574a ---------- ---------- ---------- ---------- ---------- Af91216a .....c.... .......... .......... .......... .......... Ac004405b .......... .......... .......... .......... .......... Af21335a .......... .......... .......-.. .......... .......... Ac3997a .......... .......... .......... .......... .......... Ac3019a ---------- ---------- ---------- ---------- ---------- Mmbam ---------- ---------- ---------- ---------- ---------- Mmcon ---------- ---------- ---------- ---------- ---------- Y11668b ---------- ---------- ---------- ---------- ---------- Ac7049a ---------- ---------- ---------- ---------- ---------- Af21335b ---------- ---------- ---------- ---------- ---------- Mmae663c .......... .......... .......... .......... .......... Ac4399a .......... .......... .......... .......... .......... A2node1 .......... .......... .......... .......... .......... [ ' ' ' 4050 ' ] L1MdA2 ACTCACTAAA GGGCACAGGG ACAAAATCCT AATTAACAAA ATCAGAAATG L1md9 ........g. ........c. .......... .......... .......... Tfnode1 .......... .......... .......... .......... .......... Ac4101a ......-... .......... ....c..... .......... .......... Ac5240a ......-... .......... ....c..... .......... .......... Ac6289a .......... .......... .......... .......... .......... Ac5413b .......... ........a. .......... .......... .......... Ac3996b .......... .......... .......... .......... .....g.... Ac2406a .......... .......... .......... .......... .......... Muspr ---------- ---------- ---------- ---------- ---------- Ac2406b ---------- ---------- ---------- ---------- ---------- Muska ---------- ---------- ---------- ---------- ---------- Dicon ---------- ---------- ---------- ---------- ---------- Ac4096a .......... .......... .......... g.......g. g......... Af7574a ---------- ---------- ---------- ---------- ---------- Af91216a ........g. .......... .......... .......... .......... Ac004405b .......... .......... .......... .......... .......... Af21335a .......... .......... .......... .......... .......... Ac3997a .......... ........a. .......... .......... .......... Ac3019a ---------- ---------- ---------- ---------- ---------- Mmbam ---------- ---------- ---------- ---------- ---------- Mmcon ---------- ---------- ---------- ---------- ---------- Y11668b ---------- ---------- ---------- ---------- ---------- Ac7049a ---------- ---------- ---------- ---------- ---------- Af21335b ---------- ---------- ---------- ---------- ---------- Mmae663c .......... .......... .......... .......... .......... Ac4399a .......... .......... .......... .......... .......... A2node1 .......... .......... .......... .......... .......... [ ' ' ' 4100 '] L1MdA2 AAAAGGGAGA CATAACAACA GATCCTGAAG AAATCC-AAA ACACCATCAG L1md9 .......... .......... .......... ......-... .......... Tfnode1 .......... .......... .......... ......-... .......... Ac4101a .......... .......... .......... ......-... .......... Ac5240a .......... .......... .......... ......-... .......... Ac6289a .......... .......... .......... ......-... .......... Ac5413b .......... .......... .......... ......-... .......... Ac3996b .......... .......... .......... ......-... .......... Ac2406a .......... .......... .......... ......-... .......... Muspr ---------- ---------- ---------- ---------- ---------- Ac2406b ---------- ---------- ---------- ---------- ---------- Muska ---------- ---------- ---------- ---------- ---------- Dicon ---------- ---------- ---------- ---------- ---------- Ac4096a ..gg...... ...g...... .......... ......-... .......... Af7574a ---------- ---------- ---------- ---------- ---------- Af91216a .......... .......... .......... ......-... .......... Ac004405b .......... .......... .......... ......-... .......... Af21335a .......... .......... .......... ......-... .......... Ac3997a .......... .......... .......... ......-... .......... Ac3019a ---------- ---------- ---------- ---------- ---------- Mmbam ---------- ---------- ---------- ---------- ---------- Mmcon ---------- ---------- ---------- ---------- ---------- Y11668b ---------- ---------- ---------- ---------- ---------- Ac7049a ---------- ---------- ---------- ---------- ---------- Af21335b ---------- ---------- ---------- ---------- ---------- Mmae663c .......... .......... .......... ......c... .......... Ac4399a .......... .......... .......... ......-... .......... A2node1 .......... .......... .......... ......-... .......... [ ' ' ' 4150 '] L1MdA2 ATCCTTCTAC AAAAGGCTAT ACTCAACAAA ACTGGAAAAC CTGGACGAAA L1md9 .......... ......t... .......... .......... .......... Tfnode1 .......... .......... .......... .......... .......... Ac4101a .......... .......... .......... ......t... .......... Ac5240a .......... .......... .......... ......t... .......... Ac6289a .......... .......... .......... .......... ...a...... Ac5413b .......... ......t... .......... .......... .....t.... Ac3996b .......... .......... .......... .......... .......... Ac2406a .........t .......... .......... .......... ....g..... Muspr ---------- ---------- ---------- ---------- ---------- Ac2406b ---------- ---------- ---------- ---------- ---------- Muska ---------- ---------- ---------- ---------- ---------- Dicon ---------- ---------- ---------- ---------- ---------- Ac4096a .......... .......... .......... .......... ......a... Af7574a ---------- ---------- ---------- ---------- ---------- Af91216a .......... .......... .......... .....t.... .......... Ac004405b .......... .......... .......... .......... .......... Af21335a .......... .......... .......... .......... .......... Ac3997a .......... ......t... .......... .......... .......... Ac3019a ---------- ---------- ---------- ---------- ---------- Mmbam ---------- ---------- ---------- ---------- ---------- Mmcon ---------- ---------- ---------- ---------- ---------- Y11668b ---------- ---------- ---------- ---------- ---------- Ac7049a ---------- ---------- ---------- ---------- ---------- Af21335b ---------- ---------- ---------- ---------- ---------- Mmae663c ..t....... .......... .......... .......... ......a... Ac4399a .......... .......... .......... .......... .......... A2node1 .......... .......... .......... .......... .......... [ ' ' ' 4200 '] L1MdA2 TGGACAAATT TCTGGACAGA TACCAGGTAC CAAAGTTGAA TCAGGATCAA L1md9 c...g..... .......... .......... .......... .......... Tfnode1 .......... .......... .......... .......... .......... Ac4101a .......... .......... .......... .......... .......... Ac5240a .......... .......... .......... .......... .......... Ac6289a .......... .......... .......... .......... .......... Ac5413b .......... .......... .......... .........g .......... Ac3996b .......... .......... .......... .......... .......... Ac2406a .......... .......... .......... .......... .t........ Muspr ---------- ---------- ---------- ---------- ---------- Ac2406b ---------- ---------- ---------- ---------- ---------- Muska ---------- ---------- ---------- ---------- ---------- Dicon ---------- ---------- ---------- ---------- ---------- Ac4096a .......... .......... ........g. ...g...... .........g Af7574a ---------- ---------- ---------- ---------- ---------- Af91216a .......... ......a... .......... .......... .......... Ac004405b .......... .......... .......... .......... .......... Af21335a .......... .......... .......... .......... .......... Ac3997a .......... .......... .......... .......... .......... Ac3019a ---------- ---------- ---------- ---------- ---------- Mmbam ---------- ---------- ---------- ---------- ---------- Mmcon ---------- ---------- ---------- ---------- ---------- Y11668b ---------- ---------- ---------- ---------- ---------- Ac7049a ---------- ---------- ---------- ---------- ---------- Af21335b ---------- ---------- ---------- ---------- ---------- Mmae663c .......... .......... .......... .......... .......... Ac4399a .......... .......... .......... .......... .......... A2node1 .......... .......... .......... .......... .......... [ ' ' ' 4250 '] L1MdA2 GTTGACCATC TAAACAGTCC CATATCACCT AAAGAAATAG AAGCAGTTAT L1md9 t......... .......... ......c... .........t .......... Tfnode1 .......t.. .......... ......c... .......... .......... Ac4101a .......... .......... ......c... .......... ...t...... Ac5240a .......... .......... ......c... .......... ...t...... Ac6289a .......... .......... ......c... .......... ..a....... Ac5413b .......... .......... .......... .......... .......... Ac3996b .......... .......... .......... .......... .......... Ac2406a .......... .......... .......... .......... ...t...... Muspr ---------- ---------- ---------- ---------- ---------- Ac2406b ---------- ---------- ---------- ---------- ---------- Muska ---------- ---------- ---------- ---------- ---------- Dicon ---------- ---------- ---------- ---------- ---------- Ac4096a .c...t..c. .....g.... .......... .......... .......... Af7574a ---------- ---------- ---------- ---------- ---------- Af91216a ......t... .......... .......... .......... .......... Ac004405b .......... .......... .......... .......... .......... Af21335a .....t.... .......... .......... .......... .......... Ac3997a .......t.. .......... .......... .......... .......... Ac3019a ---------- ---------- ---------- ---------- ---------- Mmbam ---------- ---------- ---------- ---------- ---------- Mmcon ---------- ---------- ---------- ---------- ---------- Y11668b ---------- ---------- ---------- ---------- ---------- Ac7049a ---------- ---------- ---------- ---------- ---------- Af21335b ---------- ---------- ---------- ---------- ---------- Mmae663c .....t.... .......... .......... .......... .......... Ac4399a .......t.. .......... .........a .......... .......... A2node1 .......... .......... .......... .......... .......... [ ' ' ' 4300 '] L1MdA2 TAATAGTCTC CCAACCAAAA AAAGCCCAGG ACCAGATGGG TTTAGTGCAG L1md9 .......... ...g...... .......... .......... .......... Tfnode1 .......... ...g...... .......... ......c... .......... Ac4101a .......... ...g...... .......... ......ca.. .......... Ac5240a .......... ...g...... .......... ......ca.. .......... Ac6289a .......... ...g...... .......... ......c... .......... Ac5413b .......... ...g...... .......... ......c... .......... Ac3996b c......... ...g...... .......... ......c... .......... Ac2406a .......... ...g...... .......... ......c.t. .......... Muspr ---------- ---------- ---------- ---------- ---------- Ac2406b ---------- ---------- ---------- ---------- ---------- Muska ---------- ---------- ---------- ---------- ---------- Dicon ---------- ---------- ---------- ---------- ---------- Ac4096a .......... .......... .......... .......... .......... Af7574a ---------- ---------- ---------- ---------- ---------- Af91216a .......... .......... .......... .......... .......... Ac004405b .......... .......... .......... .......... .......... Af21335a .......... .......... .......... .......... .......... Ac3997a .......... .......... .......... .......... .......... Ac3019a ---------- ---------- ---------- ---------- ---------- Mmbam ---------- ---------- ---------- ---------- ---------- Mmcon ---------- ---------- ---------- ---------- ---------- Y11668b ---------- ---------- ---------- ---------- ---------- Ac7049a ---------- ---------- ---------- ---------- ---------- Af21335b ---------- ---------- ---------- ---------- ---------- Mmae663c .......... .......... .......... .......... .......... Ac4399a .......... ....g..... .......... .......... .......... A2node1 .......... .......... .......... .......... .......... [ ' ' ' 4350 '] L1MdA2 AGTTCTATCA GACCTTCAAA GAAGATCTAA TTCCAATTCT GCACAAACTA L1md9 .......... .......... .......... .....g.... .......... Tfnode1 .......... .......... .......... c....g.... .........t Ac4101a .......... .......... .......... .....g.... .......... Ac5240a .......... .......... .......... .....g.... .......... Ac6289a .......... ........g. .---...... .....g.... .......... Ac5413b .......... .......... ...a...... .....g.... .t........ Ac3996b .a........ .......... .......... .....g.... .......... Ac2406a .......... .......... .......... .....g.... .......... Muspr ---------- ---------- ---------- ---------- ---------- Ac2406b ---------- ---------- ---------- ---------- ---------- Muska ---------- ---------- ---------- ---------- ---------- Dicon ---------- ---------- ---------- ---------- ---------- Ac4096a .......... .......... .......... .....g.... .......... Af7574a ---------- ---------- ---------- ---------- ---------- Af91216a .......... .......... .......... .....c.... .......... Ac004405b .......... .......... .......... .......... .......... Af21335a .......... .......... .......... ...t.g.... .......... Ac3997a .......... .......... .......... .....g.... t......... Ac3019a ---------- ---------- ---------- ---------- ---------- Mmbam ---------- ---------- ---------- ---------- ---------- Mmcon ---------- ---------- ---------- ---------- ---------- Y11668b ---------- ---------- ---------- ---------- ---------- Ac7049a ---------- ---------- ---------- ---------- ---------- Af21335b ---------- ---------- ---------- ---------- ---------- Mmae663c .......... .......... .......... .......... .......... Ac4399a .......... .......... .......... .......... .......... A2node1 .......... .......... .......... .......... .......... [ ' ' ' 4400 '] L1MdA2 TTTCACAAAA TAGAAGTAGA AGGTACTCTA CCCAACTCAT TTTATGAAGC L1md9 .......... .......... .......... .......... .......... Tfnode1 ........g. .......... .....t.... .......... .......... Ac4101a .......... .......... .......... .......... .......... Ac5240a .......... .......... .......... .......... .......... Ac6289a .......... .......... .......... .......... .......... Ac5413b .......... .......... .......... .......... .......... Ac3996b .......... .......... .......... .......... .......... Ac2406a .......... .......... ........a. .......... .......... Muspr ---------- ---------- ---------- ---------- ---------- Ac2406b ---------- ---------- ---------- ---------- ---------- Muska ---------- ---------- ---------- ---------- ---------- Dicon ---------- ---------- ---------- ---------- ---------- Ac4096a .......... .......... .......... .......... .......... Af7574a ---------- ---------- ---------- ---------- ---------- Af91216a .......... .......... .......... .......... .......... Ac004405b .......... .......... .......... .......... .......... Af21335a .......... .......... .......... .......... .......... Ac3997a ..c....... .....ac.t. .......... .......... .c........ Ac3019a ---------- ---------- ---------- ---------- ---------- Mmbam ---------- ---------- ---------- ---------- ---------- Mmcon ---------- ---------- ---------- ---------- ---------- Y11668b ---------- ---------- ---------- ---------- ---------- Ac7049a ---------- ---------- ---------- ---------- ---------- Af21335b ---------- ---------- ---------- ---------- ---------- Mmae663c .......... .......... .......... .......... .......... Ac4399a .......... .......... .......... .......... .......... A2node1 .......... .......... .......... .......... .......... [ ' ' ' 4450 '] L1MdA2 CACTATTACT CTGATACCTA AACCACAGAA AGATCCAACA AAGATAGAGA L1md9 ...a...... .......... ...t...... .......... .......... Tfnode1 .......... .......... .......... .......... .......... Ac4101a .......... .......... .......... c..c...... .......... Ac5240a .......... .......... .......... c..c...... .......... Ac6289a .......... .......... .......... ...c...... .......... Ac5413b .......... .......... .......... ....t..... .......... Ac3996b .......... .....g.... .......... .......... .......... Ac2406a .......... .......... .......... ...c...... .......... Muspr ---------- ---------- ---------- ---------- ---------- Ac2406b ---------- ---------- ---------- ---------- ---------- Muska ---------- ---------- ---------- ---------- ---------- Dicon ---------- ---------- ---------- ---------- ---------- Ac4096a .......... .......... .......... ...c...... .......... Af7574a ---------- ---------- ---------- ---------- ---------- Af91216a .......... .......... .......... ...c...... .......... Ac004405b .......... .......... ......t... ...c...... .......... Af21335a .......... .......... .......... ...c...... .......... Ac3997a ...ag..... .......... .......a.. ...c...... .......... Ac3019a ---------- ---------- ---------- ---------- ---------- Mmbam ---------- ---------- ---------- ---------- ---------- Mmcon ---------- ---------- ---------- ---------- ---------- Y11668b ---------- ---------- ---------- ---------- ---------- Ac7049a ---------- ---------- ---------- ---------- ---------- Af21335b ---------- ---------- ---------- ---------- ---------- Mmae663c .......... .......... .......... .......... .......... Ac4399a .......... .......... .......... .......t.. .......... A2node1 .......... .......... .......... .......... .......... [ ' ' ' 4500 '] L1MdA2 ACTTCAGACC AATTTCTCTT ATGAATATCG ATGCAAAAAT CCTCAATAAA L1md9 .......... ......c... ..a....... .......... .......... Tfnode1 .......... .......... .....c.... .......... t..t...... Ac4101a .......... .......... .......... .......... .......... Ac5240a .......... .......... .......... .......... .......... Ac6289a .......... .......... .......... .......... .......t.. Ac5413b .......... .......... .......... .......... .......... Ac3996b .......... .......... .......... .......... .......... Ac2406a ....t..... .......... .......... .......... .......... Muspr ---------- ---------- ---------- ---------- ---------- Ac2406b ---------- ---------- ---------- ---------- ---------- Muska ---------- ---------- ---------- ---------- ---------- Dicon ---------- ---------- ---------- ---------- ---------- Ac4096a .......... .......... .......... .......... .......... Af7574a ---------- ---------- ---------- ---------- ---------- Af91216a .......... .......... .......... .......... .......... Ac004405b .......... .......... .......... .......... .......... Af21335a .......... .......... .......... .......... .......... Ac3997a .......... ......c... .......... .......... .......... Ac3019a ---------- ---------- ---------- ---------- ---------- Mmbam ---------- ---------- ---------- ---------- ---------- Mmcon ---------- ---------- ---------- ---------- ---------- Y11668b ---------- ---------- ---------- ---------- ---------- Ac7049a ---------- ---------- ---------- ---------- ---------- Af21335b ---------- ---------- ---------- ---------- ---------- Mmae663c .......... .......... .......... .......... .......... Ac4399a .......... .......... .......... .......... .......... A2node1 .......... .......... .......... .......... .......... [ ' ' ' 4550 '] L1MdA2 ATTCTCGCTA ACCGAATCCA AGAACACATT AAAGCAATCA TCCATCCTGA L1md9 ........c. .......... .......... .......... .......... Tfnode1 .......... .......... .......... .......... .......... Ac4101a .......... .......... .......... .......... .......... Ac5240a .......... .......... .......... .......... .......... Ac6289a .......... .......... .......... .......... .......... Ac5413b .....t.... .......... ......t... .......... .......... Ac3996b .......... .......... ......t... .......... .......... Ac2406a .......... .......... ......t... .......... .......... Muspr ---------- ---------- ---------- ---------- ---------- Ac2406b ---------- ---------- ---------- ---------- ---------- Muska ---------- ---------- ---------- ---------- ---------- Dicon ---------- ---------- ---------- ---------- ---------- Ac4096a .......... .......... ......t... .......... .......... Af7574a ---------- ---------- ---------- ---------- ---------- Af91216a .......... .......... .......... .......... .......... Ac004405b .......... .......... .......... .......... .......... Af21335a .......... .......... .......... .......... .......... Ac3997a g....t.... .......t.. .........c ...ag..... .......... Ac3019a ---------- ---------- ---------- ---------- ---------- Mmbam ---------- ---------- ---------- ---------- ---------- Mmcon ---------- ---------- ---------- ---------- ---------- Y11668b ---------- ---------- ---------- ---------- ---------- Ac7049a ---------- ---------- ---------- ---------- ---------- Af21335b ---------- ---------- ---------- ---------- ---------- Mmae663c .......... .......... .......... .......... .......... Ac4399a .......... .......... .......... .......... .......... A2node1 .......... .......... .......... .......... .......... [ ' ' ' 4600 '] L1MdA2 CCAAGTAGGT TTTATTCCAG GGATGCAGGG ATGGTTTAAT ATACGAAAAT L1md9 .......... .......... .......... .......... ....a..... Tfnode1 .......... .......... .......... .......... .......... Ac4101a .......... .......... .......... .......... .......... Ac5240a .......... .......... .......... .......... .......... Ac6289a .......... .......... .......... .......... .......... Ac5413b .......... .......... .......... ..a....... .......... Ac3996b .......... .......... .......... .......... .......... Ac2406a .......... .......... .......... .......... .......... Muspr ---------- ---------- ---------- ---------- ---------- Ac2406b ---------- ---------- ---------- ---------- ---------- Muska ---------- ---------- ---------- ---------- ---------- Dicon ---------- ---------- ---------- ---------- ---------- Ac4096a .......... .......... .......... .......... .......... Af7574a ---------- ---------- ---------- ---------- ---------- Af91216a .......... .......... .......... .......... .......... Ac004405b .......... .......... .......... .......... .......... Af21335a .......... .......... .......... .......... .......... Ac3997a ........a. ..c..c.... .......... ......c... ...t.g.... Ac3019a ---------- ---------- ---------- ---------- ---------- Mmbam ---------- ---------- ---------- ---------- ---------- Mmcon ---------- ---------- ---------- ---------- ---------- Y11668b ---------- ---------- ---------- ---------- ---------- Ac7049a ---------- ---------- ---------- ---------- ---------- Af21335b ---------- ---------- ---------- ---------- ---------- Mmae663c .......... .......... .......... .......... .......... Ac4399a .......... .......... .......... .......... .......... A2node1 .......... .......... .......... .......... .......... [ ' ' ' 4650 '] L1MdA2 CCATCAATGT AATCCATTAT ATAAACAAAC TCAAAGACAA AAACCACATG L1md9 .......... .......... ....g..... .......... .......... Tfnode1 .......... .......... .......... .......... .......... Ac4101a .......... .......... .......... .......... .......... Ac5240a .......... .......... .......... .......... .......... Ac6289a .......... .......... .......... .......... .......... Ac5413b .......... .......... .......... .......... .......... Ac3996b .......... .......... .......... .......... .......... Ac2406a .......... .......... .......... .......... .......... Muspr ---------- ---------- ---------- ---------- ---------- Ac2406b ---------- ---------- ---------- ---------- ---------- Muska ---------- ---------- ---------- ---------- ---------- Dicon ---------- ---------- ---------- ---------- ---------- Ac4096a .......... .......... .......... .......... .......... Af7574a ---------- ---------- ---------- ---------- ---------- Af91216a .......... .......... .......... .......... .......... Ac004405b .......... .......... .......... .......... .......... Af21335a .......... .......... .......... .......... .......... Ac3997a .......c.. ......g... .......... .......... .......... Ac3019a ---------- ---------- ---------- ---------- ---------- Mmbam ---------- ---------- ---------- ---------- ---------- Mmcon ---------- ---------- ---------- ---------- ---------- Y11668b ---------- ---------- ---------- ---------- ---------- Ac7049a ---------- ---------- ---------- ---------- ---------- Af21335b ---------- ---------- ---------- ---------- ---------- Mmae663c .......... .......... .......... .......... .......... Ac4399a .......... .......... .......... .......... .......... A2node1 .......... .......... .......... .......... .......... [ ' ' ' 4700 '] L1MdA2 ATCATCTCGT TAGATGCAGA AAAAGCATTT GACAAGATCC AACACCCATT L1md9 ........a. .......... .......... .......... .......... Tfnode1 .......... .......... .......... .......... .......... Ac4101a .......... .......... .......... .......... .......... Ac5240a .......... .......... .......... .......... .......... Ac6289a .......... .......... .......... .......... .......... Ac5413b .....t.t.. .......... .......... .......... ..........