#NEXUS [!Imported GCG-MSF file "c:\tf\tf1.nxx" (Mon Sep 27 17:26:14 1999)] [ Tf1.N.. MSF: 5876 Type: N September 27, 1999 16:42 Check: 5864 .. ] Begin data; Dimensions ntax=18 nchar=5876; Format datatype=DNA interleave gap=- matchchar=.; Matri.n [ ' 1550 ' ' ' ] L1mdA2 ACTTCTGCCA GGAGTCTGGT TCGAACACCA GATATCTGGG TACCTGCCTT Tfnode1 t....g.... ....-ga... c.a..t..a. ........c. c....t..c. Ac3063a ---------- ---------- ---------- ---------- ---------- Ac5403c ---------- ---------- ---------- ---------- ---------- Af136179a ---------- ---------- ---------- ---------- ---------- Musrsl1r ---------- ---------- ---------- ---------- ---------- Ac5403lr ---------- ---------- ---------- ---------- ---------- Ac5938a t....g.... ....-ga... c.a..t..a. ........c. c....t..c. Dam ---------- ---------- ---------- ---------- ---------- Das ---------- ---------- ---------- ---------- ---------- Dao ---------- ---------- ---------- ---------- ---------- Ac3949lr ---------- ---------- ---------- ---------- ---------- Af081114 t....g.... ....-ga... c.a..t..a. ........t. c....t..c. Af081108 t....g.... ....-ga... c.a..t..a. ........c. c....t..c. Af081110 t....g.... ....-ga... c.a..t..a. ........c. c....t..c. Af081104 t....g.... ....-ga... c.a..t..a. ........c. c....t..c. Af081105 t....g.... ....-ga... c.a..t..a. ........c. c....t..c. Tfnode2 t....g.... ....-ga... c.a..t..a. ........c. c....t..c. [ ' 1600 ' ' ' ] L1mdA2 GCAAGAAGAG AGCTTGCCTG CAGAGAATAC TCTGCCCACT GAAACT--AA Tfnode1 .t....---. ........a. ......g.g. ....ag.... ......cag. Ac3063a ---------- ---------- ---------- ---------- ---------- Ac5403c ---------- ---------- ---------- ---------- ---------- Af136179a ---------- ---------- ---------- ---------- ---------- Musrsl1r ---------- ---------- ---------- ---------- ---------- Ac5403lr ---------- ---------- ---------- ---------- ---------- Ac5938a .t....---. ........a. ......g.g. ....ag.... ......cag. Dam ---------- ---------- ---------- ---------- ---------- Das ---------- ---------- ---------- ---------- ---------- Dao ---------- ---------- ---------- ---------- ---------- Ac3949lr ---------- ---------- ---------- ---------- ---------- Af081114 .t....---. ........a. ......g.g. ....ag.... ......cag. Af081108 .t....---. ........a. ......g.g. ....ag.... ......cagt Af081110 .t....---. ........a. ......g.g. ....ag.... ......cag. Af081104 .t....---. ........a. ......g.g. ....ag.... ......cag. Af081105 .t....---. ........a. ......g.g. ....ag.... ......cag. Tfnode2 .t....---. ........a. ......g.g. ....ag.... ......cag. [ ' 1650 ' ' ' ] L1mdA2 GGAGAGTGCT ACCCTCC-AG GTCTGCTCAT AGAGGCTAAC AGAGTCACCT Tfnode1 ......aatc tgt....c.. .......g.. ...c.g.... ...a.....a Ac3063a ---------- ---------- ---------- ---------- ---------- Ac5403c ---------- ---------- ---------- ---------- ---------- Af136179a ---------- ---------- ---------- ---------- ---------- Musrsl1r ---------- ---------- ---------- ---------- ---------- Ac5403lr ---------- ---------- ---------- ---------- ---------- Ac5938a ......aatc tgt....c.. .......g.. ...c.g.... ...a.....a Dam ---------- ---------- ---------- ---------- ---------- Das ---------- ---------- ---------- ---------- ---------- Dao ---------- ---------- ---------- ---------- ---------- Ac3949lr ---------- ---------- ---------- ---------- ---------- Af081114 ......aatc tgt....c.. .......g.. ...t.g.... ...a.....a Af081108 ......aatc tgt....c.. .......g.. ...c.g.... ...a.....a Af081110 ......aatc tgt....c.. .......g.. ...c.g.... ...a.....a Af081104 ......aatc tgt....c.. .......g.. ...c.g.... ...a.....a Af081105 ......aatc tgt....c.. .......g.. ...c.g.... ...a.....a Tfnode2 ......aatc tgt....c.. .......g.. ...c.g.... ...a.....a [ ' 1700 ' ' ' ] L1mdA2 GAAGAACAAG CTCTTAACAG TGACAACTAA AACAGCTAGC TTCAGAGATT Tfnode1 .........t ....a..... a.t......t ...ta...a. .c........ Ac3063a ---------- ---------- ---------- ---------- ---------- Ac5403c ---------- ---------- ---------- ---------- ---------- Af136179a ---------- ---------- ---------- ---------- ---------- Musrsl1r ---------- ---------- ---------- ---------- ---------- Ac5403lr ---------- ---------- ---------- ---------- ---------- Ac5938a .........t ....a..... a.t......t ...ta...a. .c........ Dam ---------- ---------- ---------- ---------- ---------- Das ---------- ---------- ---------- ---------- ---------- Dao ---------- ---------- ---------- ---------- ---------- Ac3949lr ---------- ---------- ---------- ---------- ---------- Af081114 .........t ....a..... a.t......t ...ta...a. .c........ Af081108 .........t ....a..... a.t......t ...ta...at .c........ Af081110 .........t ....a..... a.t......t ...ta...a. .c........ Af081104 .........t ....a..... a.t......t ...ta...a. .c........ Af081105 .........t ....a..... a.t......t ...ta...a. .c........ Tfnode2 .........t ....a..... a.t......t ...ta...a. .c........ [ ' 1750 ' ' ' ] L1mdA2 ACCAGATGGC GAAAGGCAAA CGTAAGAATC CTACTAACAG AAATCAAGAC Tfnode1 .......... ......t... ..g.g..... t......... g..c...... Ac3063a ---------- ---------- ---------- ---------- ---------- Ac5403c ---------- ---------- ---------- ---------- ---------- Af136179a ---------- ---------- ---------- ---------- ---------- Musrsl1r ---------- ---------- ---------- ---------- ---------- Ac5403lr ---------- ---------- ---------- ---------- ---------- Ac5938a .......... .....at... ..g.g..... t......... g..c...... Dam ---------- ---------- ---------- ---------- ---------- Das ---------- ---------- ---------- ---------- ---------- Dao ---------- ---------- ---------- ---------- ---------- Ac3949lr ---------- ---------- ---------- ---------- ---------- Af081114 .......... ......t... ..g.g..... t......... g..c...... Af081108 .......... ......t... t.g.g..... t......... g..c...... Af081110 .......... ......t... ..g.g..... t......... g..c...... Af081104 .......... ......t... ..g.g..... t......... g..c...... Af081105 .......... ......t... ..g.g..... t......... g..c...... Tfnode2 .......... ......t... ..g.g..... t......... g..c...... [ ' 1800 ' ' ' ] L1mdA2 CACTCACCAT CATCAGAACG CAGCACTCCC ACCCCACCTA GTCCTGGGCA Tfnode1 .......... ..c......c ......a... ..tt.g..c. ....a...a. Ac3063a ---------- ---------- ---------- ---------- ---------- Ac5403c ---------- ---------- ---------- ---------- ---------- Af136179a ---------- ---------- ---------- ---------- ---------- Musrsl1r ---------- ---------- ---------- ---------- ---------- Ac5403lr ---------- ---------- ---------- ---------- ---------- Ac5938a .......... ..c......c ......a... ..tt.g..c. ....a...a. Dam ---------- ---------- ---------- ---------- ---------- Das ---------- ---------- ---------- ---------- ---------- Dao ---------- ---------- ---------- ---------- ---------- Ac3949lr ---------- ---------- ---------- ---------- ---------- Af081114 .......... ..c......c .....ta... ..tt.g..c. ....a...a. Af081108 .......... ..c......c ......a... ..tt.g..c. ....a...a. Af081110 .......... ..c......c ......a... ..tt.g..c. ....a...a. Af081104 .......... ..c......c ......a... ..tt.g..c. ....a...a. Af081105 .......... ..c......c ......a... ..tt.g..c. ....a...a. Tfnode2 .......... ..c......c ......a... ..tt.g..c. ....a...a. [ ' 1850 ' ' ' ] L1mdA2 CCCCAACACA ACCGAAAATC TAGACCCAGA TTTAAAAACA TTTCTCATGA Tfnode1 .......... c.t..g..c. ......t... .......g.. .a........ Ac3063a ---------- ---------- ---------- ---------- ---------- Ac5403c ---------- ---------- ---------- ---------- ---------- Af136179a ---------- ---------- ---------- ---------- ---------- Musrsl1r ---------- ---------- ---------- ---------- ---------- Ac5403lr ---------- ---------- ---------- ---------- ---------- Ac5938a .......... c.t..g..c. ......t... .......g.. .a........ Dam ---------- ---------- ---------- ---------- ---------- Das ---------- ---------- ---------- ---------- ---------- Dao ---------- ---------- ---------- ---------- ---------- Ac3949lr ---------- ---------- ---------- ---------- ---------- Af081114 ...g...... c.t..g..c. ......t... .......g.. .a........ Af081108 .......... c.t..g..c. ...c..t... .......g.. .a........ Af081110 .......... c.t..g..c. ......t... .......g.. .a........ Af081104 .......... c.t..g..c. ......t... .......g.. .a........ Af081105 .......... c.t..g..c. ......t... .......g.. .a........ Tfnode2 .......... c.t..g..c. ......t... .......g.. .a........ [ ' 1900 ' ' ' ] L1mdA2 TGATGATAGA GGACATCAAG AAGGACTTTC ATAAGTCACT TAAAGATTTA Tfnode1 .....g.... .......... .........a ....a..... ......aa.. Ac3063a ---------- ---------- ---------- ---------- ---------- Ac5403c ---------- ---------- ---------- ---------- ---------- Af136179a ---------- ---------- ---------- ---------- ---------- Musrsl1r ---------- ---------- ---------- ---------- ---------- Ac5403lr ---------- ---------- ---------- ---------- ---------- Ac5938a .....g.... .......... .........a ....a..... ......aa.. Dam ---------- ---------- ---------- ---------- ---------- Das ---------- ---------- ---------- ---------- ---------- Dao ---------- ---------- ---------- ---------- ---------- Ac3949lr ---------- ---------- ---------- ---------- ---------- Af081114 .....g.... .......... .........a ....a..... ......aa.. Af081108 .....g.... .......... .........a ....a..... ......aa.. Af081110 .....g.... .......... .........a ....a..... ......aa.. Af081104 .....g.... .......... .........a ....a..... ......aa.. Af081105 .....g.... .......... .........a ....a..... ......aa.. Tfnode2 .....g.... .......... .........a ....a..... ......aa.. [ ' 1950 ' ' ' ] L1mdA2 CAGGAGAGCA CTGCTAAAGA GTTACAGGCT CTTAAAGAAA AGCAGGAAAA Tfnode1 .......a.. .......... ......a.tc .......... .a........ Ac3063a ---------- ---------- ---------- ---------- ---------- Ac5403c ---------- ---------- ---------- ---------- ---------- Af136179a ---------- ---------- ---------- ---------- ---------- Musrsl1r ---------- ---------- ---------- ---------- ---------- Ac5403lr ---------- ---------- ---------- ---------- ---------- Ac5938a .......a.. .......... ......a.tc .......... .a........ Dam ---------- ---------- ---------- ---------- ---------- Das ---------- ---------- ---------- ---------- ---------- Dao ---------- ---------- ---------- ---------- ---------- Ac3949lr ---------- ---------- ---------- ---------- ---------- Af081114 .......a.. .......... ......a.tc .......... .a........ Af081108 .......a.. .......... ......a.tc .......... .a........ Af081110 .......a.. .......... ......a.tc .......... .a........ Af081104 .......a.. .......... ......a.tc .......... .a........ Af081105 .......a.. .......... ......a.tc .......... .a........ Tfnode2 .......a.. .......... ......a.tc .......... .a........ [ ' 2000 L1mdA2 CACAGCCAAA CAGGT----- ---------- ---------- ---------- Tfnode1 ....at.... .....agaag tccttacaga aaaagaggaa aaaacataca Ac3063a ---------- ---------- ---------- ---------- ---------- Ac5403c ---------- ---------- ---------- ---------- ---------- Af136179a ---------- ---------- ---------- ---------- ---------- Musrsl1r ---------- ---------- ---------- ---------- ---------- Ac5403lr ---------- ---------- ---------- ---------- ---------- Ac5938a ....at.... .....agaag tccttacaga aaaagaggaa aaaacataca Dam ---------- ---------- ---------- ---------- ---------- Das ---------- ---------- ---------- ---------- ---------- Dao ---------- ---------- ---------- ---------- ---------- Ac3949lr ---------- ---------- ---------- ---------- ---------- Af081114 ....at.... .....agaag tccttacaga aaaagaggaa aaaacataca Af081108 ....at.... .....agaag tccttacaga aaaagaggaa aaaacataca Af081110 ....at.... .....agaag tccttacaga aaaagaggaa aaaacataca Af081104 ....at.... .....agaag tccttacaga aaaagaggaa aaaacataca Af081105 ....at.... .....agaag tccttacaga aaaagaggaa aaaacataca Tfnode2 ....at.... .....agaag tccttacaga aaaagaggaa aaaacataca [ ' ' ' ' ] L1mdA2 -------GAT GGAAATGAAC AAAACCATAC TAGAACTAAA AGGGGAAGTA Tfnode1 aacaggt... .......... .......... ....c..... .a........ Ac3063a ---------- ---------- ---------- ---------- ---------- Ac5403c ---------- ---------- ---------- ---------- ---------- Af136179a ---------- ---------- ---------- ---------- ---------- Musrsl1r ---------- ---------- ---------- ---------- ---------- Ac5403lr ---------- ---------- ---------- ---------- ---------- Ac5938a aacaggt... .......... .......... ....c..... .a........ Dam ---------- ---------- ---------- ---------- ---------- Das ---------- ---------- ---------- ---------- ---------- Dao ---------- ---------- ---------- ---------- ---------- Ac3949lr ---------- ---------- ---------- ---------- ---------- Af081114 aacaggt... .......... .......... ....c..... .a........ Af081108 aacaggt... .......... .......... ....c..... .a..a..... Af081110 aacaggt... .......... .......... ....c..... .a........ Af081104 aacaggt... .......... .......... ....c..... .a........ Af081105 aacaggt... .......... .......... ....c..... .a........ Tfnode2 aacaggt... .......... .......... ....c..... .a........ [ 2050 ' ' ' ' ] L1mdA2 GACACAATAA AGAAAACCCA AAGCGAGGCA ACGCTGGAGA TAGAAACCCT Tfnode1 .......... .......t.. .......... ..a..a.... .......... Ac3063a ---------- ---------- ---------- ---------- ---------- Ac5403c ---------- ---------- ---------- ---------- ---------- Af136179a ---------- ---------- ---------- ---------- ---------- Musrsl1r ---------- ---------- ---------- ---------- ---------- Ac5403lr ---------- ---------- ---------- ---------- ---------- Ac5938a .......... .......t.. .......... ..a..a.... .......... Dam ---------- ---------- ---------- ---------- ---------- Das ---------- ---------- ---------- ---------- ---------- Dao ---------- ---------- ---------- ---------- ---------- Ac3949lr ---------- ---------- ---------- ---------- ---------- Af081114 .......... .......t.. .......... ..a..a.... .......... Af081108 .......... .......t.. .......... ..a..a.... .......... Af081110 .......... .......t.. .......... ..a..a.... .......... Af081104 .......... .......t.. .......... ..a..a.... .......... Af081105 .......... .......t.. .......... ..a..a.... .......... Tfnode2 .......... .......t.. .......... ..a..a.... .......... [ 2100 ' ' ' ' ] L1mdA2 AGGAAAGAGA TCTGGAACCA TAGATGCGAG CATCAGCAAC AGAATACAAG Tfnode1 ........a. .......... .....tt... .......... .......... Ac3063a ---------- ---------- ---------- ---------- ---------- Ac5403c ---------- ---------- ---------- ---------- ---------- Af136179a ---------- ---------- ---------- ---------- ---------- Musrsl1r ---------- ---------- ---------- ---------- ---------- Ac5403lr ---------- ---------- ---------- ---------- ---------- Ac5938a ........a. .......... .....tt... .......... .......... Dam ---------- ---------- ---------- ---------- ---------- Das ---------- ---------- ---------- ---------- ---------- Dao ---------- ---------- ---------- ---------- ---------- Ac3949lr ---------- ---------- ---------- ---------- ---------- Af081114 ........a. .......... .....tt... .......... .......... Af081108 ........a. .......... .....tt... .......... .......... Af081110 ........a. .......... .....tt... .......... .......... Af081104 ........a. .......... .....tt... .......... .......... Af081105 ........a. .......... .....tt... .......... .......... Tfnode2 ........a. .......... .....tt... .......... .......... [ 2150 ' ' ' ' ] L1mdA2 AAATGGAAGA GAGAATCTCA GGTGCAGAAG ATTCCATAGA GAACATCGAC Tfnode1 .g........ .......... .......... .......... ........g. Ac3063a ---------- ---------- ---------- ---------- ---------- Ac5403c ---------- ---------- ---------- ---------- ---------- Af136179a ---------- ---------- ---------- ---------- ---------- Musrsl1r ---------- ---------- ---------- ---------- ---------- Ac5403lr ---------- ---------- ---------- ---------- ---------- Ac5938a .g........ .......... .......... .......... ........g. Dam ---------- ---------- ---------- ---------- ---------- Das ---------- ---------- ---------- ---------- ---------- Dao ---------- ---------- ---------- ---------- ---------- Ac3949lr ---------- ---------- ---------- ---------- ---------- Af081114 .g........ .......... .......... .......... ........g. Af081108 .g........ .......... .......... .......... ........g. Af081110 .g........ .......... .......... .......... ........g. Af081104 .g........ .......... .......... .......... ........g. Af081105 .g........ .......... .......... .......... ........g. Tfnode2 .g........ .......... .......... .......... ........g. [ 2200 ' ' ' ' ] L1mdA2 ACAACAGTCA AAGAAAATAC AAAATGCAAA AGGATCCTAA CTCAAAACAT Tfnode1 ......a... ........gg .......... .a........ .......t.. Ac3063a ---------- ---------- ---------- ---------- ---------- Ac5403c ---------- ---------- ---------- ---------- ---------- Af136179a ---------- ---------- ---------- ---------- ---------- Musrsl1r ---------- ---------- ---------- ---------- ---------- Ac5403lr ---------- ---------- ---------- ---------- ---------- Ac5938a ......a... ........gg .......... .a........ .......t.. Dam ---------- ---------- ---------- ---------- ---------- Das ---------- ---------- ---------- ---------- ---------- Dao ---------- ---------- ---------- ---------- ---------- Ac3949lr ---------- ---------- ---------- ---------- ---------- Af081114 ......a... ........gg .......... .a........ .......t.. Af081108 ......a... ........gg .......... .a........ .......t.. Af081110 ......a... ........gg .......... .a........ .......t.. Af081104 ......a... ........gg .......... .a........ .......t.. Af081105 ......a... ........gg .......... .a........ .......t.. Tfnode2 ......a... ........gg .......... .a........ .......t.. [ 2250 ' ' ' ' ] L1mdA2 CCAGGTAATC CAGGACACAA TGAGAAGACC AAACCTACGG ATAATAGGAA Tfnode1 .....a.... .......... .a........ ....g..... .........g Ac3063a ---------- ---------- ---------- ---------- ---------- Ac5403c ---------- ---------- ---------- ---------- ---------- Af136179a ---------- ---------- ---------- ---------- ---------- Musrsl1r ---------- ---------- ---------- ---------- ---------- Ac5403lr ---------- ---------- ---------- ---------- ---------- Ac5938a .....a.... .......... .a........ ....g..... .........t Dam ---------- ---------- ---------- ---------- ---------- Das ---------- ---------- ---------- ---------- ---------- Dao ---------- ---------- ---------- ---------- ---------- Ac3949lr ---------- ---------- ---------- ---------- ---------- Af081114 .....a.... .......... .a........ ....g..... .........g Af081108 .....a.... ....c..... .a........ ....g..... .........g Af081110 .....a.... .......... .a........ ....g..... .........g Af081104 .....a.... .......... .a........ ....g..... .........g Af081105 .....a.... .......... .a........ ....g..... .........g Tfnode2 .....a.... .......... .a........ ....g..... .........g [ 2300 ' ' ' ' ] L1mdA2 TTGATGAGAA TGAAGATTTT CAACTTAAAG GGCCAGCTAA TATCTTCAAC Tfnode1 .g........ .......... .....c.... .t.....a.. c......... Ac3063a ---------- ---------- ---------- ---------- ---------- Ac5403c ---------- ---------- ---------- ---------- ---------- Af136179a ---------- ---------- ---------- ---------- ---------- Musrsl1r ---------- ---------- ---------- ---------- ---------- Ac5403lr ---------- ---------- ---------- ---------- ---------- Ac5938a .g........ .......... .....c.... .t.....a.. c......... Dam ---------- ---------- ---------- ---------- ---------- Das ---------- ---------- ---------- ---------- ---------- Dao ---------- ---------- ---------- ---------- ---------- Ac3949lr ---------- ---------- ---------- ---------- ---------- Af081114 .g........ .......... .....c.... .t.....a.. c......... Af081108 .g........ .......... .....c.... .t.....a.. c......... Af081110 .g........ .......... .....c.... .t.....a.. c......... Af081104 .g........ .......... .....c.... .t.....a.. c......... Af081105 .g........ .......... .....c.... .t.....a.. c......... Tfnode2 .g........ .......... .....c.... .t.....a.. c......... [ 2350 ' ' ' ' ] L1mdA2 AAAATAATAG AAGAAAACTT CCCAAACATA AAAAAAGAGA TGCCCATGAT Tfnode1 .....t..t. .......... ......tc.. ..g..t.... ...at....a Ac3063a ---------- ---------- ---------- ---------- ---------- Ac5403c ---------- ---------- ---------- ---------- ---------- Af136179a ---------- ---------- ---------- ---------- ---------- Musrsl1r ---------- ---------- ---------- ---------- ---------- Ac5403lr ---------- ---------- ---------- ---------- ---------- Ac5938a .....t..t. .......... ......tc.. ..g..t.... ...at....a Dam ---------- ---------- ---------- ---------- ---------- Das ---------- ---------- ---------- ---------- ---------- Dao ---------- ---------- ---------- ---------- ---------- Ac3949lr ---------- ---------- ---------- ---------- ---------- Af081114 .....t..t. .......... ......tc.. ..g..t.... ...at....a Af081108 .....t..t. .......... ......tc.. ..g..t.... ...at....a Af081110 .....t..t. .......... ......tc.. ..g..t.... ...at....a Af081104 .....t..t. .......... ......tc.. ..g..t.... ...at....a Af081105 .....t..t. .......... ......tc.. ..g..t.... ...at....a Tfnode2 .....t..t. .......... ......tc.. ..g..t.... ...at....a [ 2400 ' ' ' ' ] L1mdA2 CATACAAGAA GCATACAGAA CTCCAAATAG ACTGGACCAG AAAAGAAATT Tfnode1 .......... ..c....... .......... .......... .......... Ac3063a ---------- ---------- ---------- ---------- ---------- Ac5403c ---------- ---------- ---------- ---------- ---------- Af136179a ---------- ---------- ---------- ---------- ---------- Musrsl1r ---------- ---------- ---------- ---------- ---------- Ac5403lr ---------- ---------- ---------- ---------- ---------- Ac5938a .......... ..c....... .......... .......... .......... Dam ---------- ---------- ---------- ---------- ---------- Das ---------- ---------- ---------- ---------- ---------- Dao ---------- ---------- ---------- ---------- ---------- Ac3949lr ---------- ---------- ---------- ---------- ---------- Af081114 .......... ..c....... .......... .......... .......... Af081108 .......... ..c....... .......... .......... .......... Af081110 ....t..... ..c....... .......... .......... .......... Af081104 .......... ..c....... .......... .......... .......... Af081105 .......... ..c....... .......... .......... .......... Tfnode2 .......... ..c....... .......... .......... .......... [ 2450 ' ' ' ' ] L1mdA2 CCTCCCGACA CATAATAATC AGAACAACAA ATGCACTAAA TAAAGATAGA Tfnode1 .......... .......... ......t... .......... .......... Ac3063a ---------- ---------- ---------- ---------- ---------- Ac5403c ---------- ---------- ---------- ---------- ---------- Af136179a ---------- ---------- ---------- ---------- ---------- Musrsl1r ---------- ---------- ---------- ---------- ---------- Ac5403lr ---------- ---------- ---------- ---------- ---------- Ac5938a .......... .......... ......t... .......... .......... Dam ---------- ---------- ---------- ---------- ---------- Das ---------- ---------- ---------- ---------- ---------- Dao ---------- ---------- ---------- ---------- ---------- Ac3949lr ---------- ---------- ---------- ---------- ---------- Af081114 .......... .......... ......t... .......... .......... Af081108 .......... .......... ......t... .......... .......... Af081110 .......... .......... ......t... .......... .......... Af081104 .......... .......... ......t... .......... .......... Af081105 .......... .......... ......t... .......... .......... Tfnode2 .......... .......... ......t... .......... .......... [ 2500 ' ' ' ' ] L1mdA2 ATATTAAAAG CAGTAAGGGA GAAAGGTCAA GTAACATATA AAGGAAGGCC Tfnode1 ...c...... .......... a......... .......... ....c.a... Ac3063a ---------- ---------- ---------- ---------- ---------- Ac5403c ---------- ---------- ---------- ---------- ---------- Af136179a ---------- ---------- ---------- ---------- ---------- Musrsl1r ---------- ---------- ---------- ---------- ---------- Ac5403lr ---------- ---------- ---------- ---------- ---------- Ac5938a ...c...... .......... a......... ....a..... ....c.a... Dam ---------- ---------- ---------- ---------- ---------- Das ---------- ---------- ---------- ---------- ---------- Dao ---------- ---------- ---------- ---------- ---------- Ac3949lr ---------- ---------- ---------- ---------- ---------- Af081114 ...c...... .......... a......... .......... ....c.a... Af081108 ...c...... .......... a......... .......... ....c.a... Af081110 ...c...... .......... a......... a......... ....c.a... Af081104 ...c...... .......... a......... .......... ....c.a... Af081105 ...c...... .......... a......... .......... ....c.a... Tfnode2 ...c...... .......... a......... .......... ....c.a... [ 2550 ' ' ' ' ] L1mdA2 TATCAGAATT ACACCAGACT TTTCACCAGA GACTATGAAA GCCAGAAGAG Tfnode1 .......... ........t. .......... .......... .......... Ac3063a ---------- ---------- ---------- ---------- ---------- Ac5403c ---------- ---------- ---------- ---------- ---------- Af136179a ---------- ---------- ---------- ---------- ---------- Musrsl1r ---------- ---------- ---------- ---------- ---------- Ac5403lr ---------- ---------- ---------- ---------- ---------- Ac5938a .......... ........t. .......... .......... .......... Dam ---------- ---------- ---------- ---------- ---------- Das ---------- ---------- ---------- ---------- ---------- Dao ---------- ---------- ---------- ---------- ---------- Ac3949lr ---------- ---------- ---------- ---------- ---------- Af081114 .......... ........t. .......... .......... .......... Af081108 .......... ........t. .......... .......... .......... Af081110 .......... ........t. .......... .......... .......... Af081104 .......... ........t. .......... .......... .......... Af081105 .......... ........t. .......... .......... .......... Tfnode2 .......... ........t. .......... .......... .......... [ 2600 ' ' ' ' ] L1mdA2 CCTGGACAGA TGTTATACAG ACACTAAGAG AACACAAATG CCAGCCCAGG Tfnode1 .......... .......... .......... ........ct g......... Ac3063a ---------- ---------- ---------- ---------- ---------- Ac5403c ---------- ---------- ---------- ---------- ---------- Af136179a ---------- ---------- ---------- ---------- ---------- Musrsl1r ---------- ---------- ---------- ---------- ---------- Ac5403lr ---------- ---------- ---------- ---------- ---------- Ac5938a .......... .......... .......... ........ct g......... Dam ---------- ---------- ---------- ---------- ---------- Das ---------- ---------- ---------- ---------- ---------- Dao ---------- ---------- ---------- ---------- ---------- Ac3949lr ---------- ---------- ---------- ---------- ---------- Af081114 .......... .......... .......... ........ct g......... Af081108 .......... .......... .......... ........ct g......... Af081110 .......... .......... .......... ........ct g......... Af081104 .......... .......... .......... ........ct g......... Af081105 .......... .......... .......... ........ct g......... Tfnode2 .......... .......... .......... ........ct g......... [ 2650 ' ' ' ' ] L1mdA2 CTACTATACC CGGCCAAACT CTCAATTACC ATAGATGGAG AAACCAAAGT Tfnode1 .......... .a........ ........t. .....g.... .......... Ac3063a ---------- ---------- ---------- ---------- ---------- Ac5403c ---------- ---------- ---------- ---------- ---------- Af136179a ---------- ---------- ---------- ---------- ---------- Musrsl1r ---------- ---------- ---------- ---------- ---------- Ac5403lr ---------- ---------- ---------- ---------- ---------- Ac5938a .....t.... .a........ ........t. .....g.... .......... Dam ---------- ---------- ---------- ---------- ---------- Das ---------- ---------- ---------- ---------- ---------- Dao ---------- ---------- ---------- ---------- ---------- Ac3949lr ---------- ---------- ---------- ---------- ---------- Af081114 .......... .a........ ........t. .....g.... .......g.. Af081108 .......... .a........ ........t. .....g.... .......... Af081110 .......... .a........ ........t. .....g.... .......... Af081104 .......... .a........ ........t. .....g.... .......... Af081105 .......... .a........ ........t. .....g.... .......... Tfnode2 .......... .a........ ........t. .....g.... .......... [ 2700 ' ' ' ' ] L1mdA2 ATTCCACGAC AAAACCAAGT TCACACAATA TCTTTCCACG AATCCAGCCC Tfnode1 .......... ........a. ....g..t.. ...c...... .......... Ac3063a ---------- ---------- ---------- ---------- ---------- Ac5403c ---------- ---------- ---------- ---------- ---------- Af136179a ---------- ---------- ---------- ---------- ---------- Musrsl1r ---------- ---------- ---------- ---------- ---------- Ac5403lr ---------- ---------- ---------- ---------- ---------- Ac5938a .......... ........a. ....g..t.. ...c...... .......... Dam ---------- ---------- ---------- ---------- ---------- Das ---------- ---------- ---------- ---------- ---------- Dao ---------- ---------- ---------- ---------- ---------- Ac3949lr ---------- ---------- ---------- ---------- ---------- Af081114 .......... ........a. ....g..t.. ...c...... .......... Af081108 .......... ........a. ....g..t.. ...c...... .......... Af081110 .......... ........a. ....g..t.. ...c...... .......... Af081104 .......... ........a. ....g..t.. ...c...... .......... Af081105 .......... ........a. ....g..t.. ...c...... .......... Tfnode2 .......... ........a. ....g..t.. ...c...... .......... [ 2750 ' ' ' ' ] L1mdA2 TTCAAAGGAT AATAACAGAA AAGAAACAAT ACAAGGACGG AAATCACGCC Tfnode1 .......... .......... ..a..c.... .....a.... g..ca..... Ac3063a ---------- ---------- ---------- ---------- ---------- Ac5403c ---------- ---------- ---------- ---------- ---------- Af136179a ---------- ---------- ---------- ---------- ---------- Musrsl1r ---------- ---------- ---------- ---------- ---------- Ac5403lr ---------- ---------- ---------- ---------- ---------- Ac5938a .......... .......... ..a..c.... .....a.... g..ca..... Dam ---------- ---------- ---------- ---------- ---------- Das ---------- ---------- ---------- ---------- ---------- Dao ---------- ---------- ---------- ---------- ---------- Ac3949lr ---------- ---------- ---------- ---------- ---------- Af081114 .......... .......... ..a..c.... .....a.... g..ca..... Af081108 .......... .......... ..a..c.... .....a.... g..ca..... Af081110 .......... .......... ..a..c.... .....a.... g..ca..... Af081104 .......... .......... ..a..c.... .....a.... g..ca..... Af081105 .......... .......... ..a..c.... .....a.... g..ca..... Tfnode2 .......... .......... ..a..c.... .....a.... g..ca..... [ 2800 ' ' ' ' ] L1mdA2 CTAGAACAAC CAAGAAAGTA ATCATTCAAC AAACCAAAAA GAAGACAGCC Tfnode1 ......a..a ......g... ...cc..... .....t.... .......... Ac3063a ---------- ---------- ---------- ---------- ---------- Ac5403c ---------- ---------- ---------- ---------- ---------- Af136179a ---------- ---------- ---------- ---------- ---------- Musrsl1r ---------- ---------- ---------- ---------- ---------- Ac5403lr ---------- ---------- ---------- ---------- ---------- Ac5938a ......a..a ......g... ...cc..... .....t.... .......... Dam ---------- ---------- ---------- ---------- ---------- Das ---------- ---------- ---------- ---------- ---------- Dao ---------- ---------- ---------- ---------- ---------- Ac3949lr ---------- ---------- ---------- ---------- ---------- Af081114 ......a..a ......g... ...cc..... .....t.... .......... Af081108 ......a..a ......g... ...cc..... .....t.... .......... Af081110 ......a..a ......g... ...cc..... .....t.... .......... Af081104 ......a..a ......g... ...cc..... .....t.... .......... Af081105 ......a..a ......g... ...cc..... .....t.... .......... Tfnode2 ......a..a ......g... ...cc..... .....t.... .......... [ 2850 ' ' ' ' ] L1mdA2 ACAAGAACAG AATGCCAACT CTAACAACAA AAATAAAAGG GAGCAACAAT Tfnode1 .......... .......c.. t.......t. ......c... a......... Ac3063a ---------- ---------- ---------- ---------- ---------- Ac5403c ---------- ---------- ---------- ---------- ---------- Af136179a ---------- ---------- ---------- ---------- ---------- Musrsl1r ---------- ---------- ---------- ---------- ---------- Ac5403lr ---------- ---------- ---------- ---------- ---------- Ac5938a .......... .......c.. t.......t. ......c... a......... Dam ---------- ---------- ---------- ---------- ---------- Das ---------- ---------- ---------- ---------- ---------- Dao ---------- ---------- ---------- ---------- ---------- Ac3949lr ---------- ---------- ---------- ---------- ---------- Af081114 .......... .......c.. t.......t. ......c... a......... Af081108 .......... .......c.. t.......t. ......c... a......... Af081110 .......... .......c.. t.......t. ......c... a......... Af081104 .......... .......c.. t.......t. ......c... a......... Af081105 .......... .......c.. t.......t. ......c... a......... Tfnode2 .......... .......c.. t.......t. ......c... a......... [ 2900 ' ' ' ' ] L1mdA2 TACTTTTCCT TAATATCTCT TAATATCAAT GGACTCAATT CCCCAATAAA Tfnode1 .......... .......... ...c...... ..t.....c. .g........ Ac3063a ---------- ---------- ---------- ---------- ---------- Ac5403c ---------- ---------- ---------- ---------- ---------- Af136179a ---------- ---------- ---------- ---------- ---------- Musrsl1r ---------- ---------- ---------- ---------- ---------- Ac5403lr ---------- ---------- ---------- ---------- ---------- Ac5938a .......... .......... ...c...... ..t.....c. .g........ Dam ---------- ---------- ---------- ---------- ---------- Das ---------- ---------- ---------- ---------- ---------- Dao ---------- ---------- ---------- ---------- ---------- Ac3949lr ---------- ---------- ---------- ---------- ---------- Af081114 .......... .......... ...c...... ..t.....c. .g........ Af081108 .......... .......... ...c...... ..t.....c. .g........ Af081110 .......... .......... ...c...... ..t.....c. .g........ Af081104 .......... .......... ...c...... ..t.....c. .g........ Af081105 .......... .......... ...c...... ..t.....c. .g........ Tfnode2 .......... .......... ...c...... ..t.....c. .g........ [ 2950 ' ' ' ' ] L1mdA2 AAGACATAGA CTAACAGACT GGCTACACAA ACAGGACCCA ACATTCTGCT Tfnode1 .......... ......a... .......... ...a...... .....t.... Ac3063a ---------- ---------- ---------- ---------- ---------- Ac5403c ---------- ---------- ---------- ---------- ---------- Af136179a ---------- ---------- ---------- ---------- ---------- Musrsl1r ---------- ---------- ---------- ---------- ---------- Ac5403lr ---------- ---------- ---------- ---------- ---------- Ac5938a .......... ......a... .......... ...a...... .....t.... Dam ---------- ---------- ---------- ---------- ---------- Das ---------- ---------- ---------- ---------- ---------- Dao ---------- ---------- ---------- ---------- ---------- Ac3949lr ---------- ---------- ---------- ---------- ---------- Af081114 .......... ......a... .......... ...a...... .....t.... Af081108 .......... ......a... .......... ...a...... .....t.... Af081110 .......... ......a... .......... ...a...... .....t.... Af081104 .......... ......a... .......... ...a...... .....t.... Af081105 .......... ......a... .......... ...a...... .....t.... Tfnode2 .......... ......a... .......... ...a...... .....t.... [ 3000 ' ' ' ' ] L1mdA2 GCTTACAGGA AACCCATCTC AGGGAAAAAG ACAGACACTA CCTCAGAGTG Tfnode1 .......... ...t...... ..a....... .t........ .......a.. Ac3063a ---------- ---------- ---------- ---------- ---------- Ac5403c ---------- ---------- ---------- ---------- ---------- Af136179a ---------- ---------- ---------- ---------- ---------- Musrsl1r ---------- ---------- ---------- ---------- ---------- Ac5403lr ---------- ---------- ---------- ---------- ---------- Ac5938a .......... ...t...... ..a....... .t........ .......a.. Dam ---------- ---------- ---------- ---------- ---------- Das ---------- ---------- ---------- ---------- ---------- Dao ---------- ---------- ---------- ---------- ---------- Ac3949lr ---------- ---------- ---------- ---------- ---------- Af081114 .......... ...t...... ..a....... .t........ .......a.. Af081108 .......... ...t...... ..a....... .t........ .......a.. Af081110 .......... ...t...... ..a....... .t........ .......a.. Af081104 .......... ...t...... ..a....... .t........ .......a.. Af081105 .......... ...t...... ..a....... .t........ .......a.. Tfnode2 .......... ...t...... ..a....... .t........ .......a.. [ 3050 ' ' ' ' ] L1mdA2 AAAGGCTGGA AAACAATTTT CCAAGCAAAT GGACTGAAGA AACAAGCTGG Tfnode1 .......... .......... .......... ..ta...... .......a.. Ac3063a ---------- ---------- ---------- ---------- ---------- Ac5403c ---------- ---------- ---------- ---------- ---------- Af136179a ---------- ---------- ---------- ---------- ---------- Musrsl1r ---------- ---------- ---------- ---------- ---------- Ac5403lr ---------- ---------- ---------- ---------- ---------- Ac5938a .......... .......... .......... ..ta...... .......a.. Dam ---------- ---------- ---------- ---------- ---------- Das ---------- ---------- ---------- ---------- ---------- Dao ---------- ---------- ---------- ---------- ---------- Ac3949lr ---------- ---------- ---------- ---------- ---------- Af081114 .......... .......... .......... ..ta...... .......a.. Af081108 .......... .......... .......... ..ta...... .......a.. Af081110 .......... .......... .......... ..ta...... .......a.. Af081104 .......... .......... .......... ..ta...... .......a.. Af081105 .......... .......... .......... ..ta...... .......a.. Tfnode2 .......... .......... .......... ..ta...... .......a.. [ 3100 ' ' ' ' ] L1mdA2 AGTAGCCATT TTAATATCGG ATAAAATCGA CTTCCAACCC AAAGTTATCA Tfnode1 .........c c.......t. ....g..t.. .......... .....c.... Ac3063a ---------- ---------- ---------- ---------- ---------- Ac5403c ---------- ---------- ---------- ---------- ---------- Af136179a ---------- ---------- ---------- ---------- ---------- Musrsl1r ---------- ---------- ---------- ---------- ---------- Ac5403lr ---------- ---------- ---------- ---------- ---------- Ac5938a .........c c.......t. ....g..t.. .......... .....c.... Dam ---------- ---------- ---------- ---------- ---------- Das ---------- ---------- ---------- ---------- ---------- Dao ---------- ---------- ---------- ---------- ---------- Ac3949lr ---------- ---------- ---------- ---------- ---------- Af081114 .........c c.......t. ....g..t.. .......... .....c.... Af081108 .........c c.......t. ....g..t.. .......... .....c.... Af081110 .........c c.......t. ....g..t.. .......... .....c.... Af081104 .........c c.......t. ....g..t.. .......... .....c.... Af081105 .........c c.......t. ....g..t.. .......... .....c.... Tfnode2 .........c c.......t. ....g..t.. .......... .....c.... [ 3150 ' ' ' ' ] L1mdA2 AAAAAGACAA GGAGGGACAC TTCATACTCA TCAAAGGTAA AATCCTCCAA Tfnode1 .......... .......... .....t.... .......... .......... Ac3063a ---------- ---------- ---------- ---------- ---------- Ac5403c ---------- ---------- ---------- ---------- ---------- Af136179a ---------- ---------- ---------- ---------- ---------- Musrsl1r ---------- ---------- ---------- ---------- ---------- Ac5403lr ---------- ---------- ---------- ---------- ---------- Ac5938a .......... .......... .....t.... .......... .......... Dam ---------- ---------- ---------- ---------- ---------- Das ---------- ---------- ---------- ---------- ---------- Dao ---------- ---------- ---------- ---------- ---------- Ac3949lr ---------- ---------- ---------- ---------- ---------- Af081114 .......... .........t .....t.... .......... .......... Af081108 .......... .......... .....t.... .......... .......... Af081110 .......... .......... .....t.... .......... .......... Af081104 .......... .......... .....t.... .......... .......... Af081105 .......... .......... .....t.... .......... .......... Tfnode2 .......... .......... .....t.... .......... .......... [ 3200 ' ' ' ' ] L1mdA2 GAGGAACTCT CAATTCTGAA TATCTACGCA CCAAATGCAA GGGCAGCCAC Tfnode1 .......... .......... ......t..t ......a... .a........ Ac3063a ---------- ---------- ---------- ---------- ---------- Ac5403c ---------- ---------- ---------- ---------- ---------- Af136179a ---------- ---------- ---------- ---------- ---------- Musrsl1r ---------- ---------- ---------- ---------- ---------- Ac5403lr ---------- ---------- ---------- ---------- ---------- Ac5938a .......... .......... ......t..t ......a... .a........ Dam ---------- ---------- ---------- ---------- ---------- Das ---------- ---------- ---------- ---------- ---------- Dao ---------- ---------- ---------- ---------- ---------- Ac3949lr ---------- ---------- ---------- ---------- ---------- Af081114 .......... .......... ......t..t ......a... .a........ Af081108 .......... .......... ......t..t ......a... .a........ Af081110 .......... .......... ......t..t ......a... .a........ Af081104 .......... .......... ......t..t ......a... .a........ Af081105 .......... .......... ......t..t ......a... .a........ Tfnode2 .......... .......... ......t..t ......a... .a........ [ 3250 ' ' ' ' ] L1mdA2 ATTCATTAGA GACACTTTAG TAAAGCTCAA AGCATACATT GCACCTCACA Tfnode1 .....c..a. ..a....... .......... ....c..... ..g....... Ac3063a ---------- ---------- ---------- ---------- ---------- Ac5403c ---------- ---------- ---------- ---------- ---------- Af136179a ---------- ---------- ---------- ---------- ---------- Musrsl1r ---------- ---------- ---------- ---------- ---------- Ac5403lr ---------- ---------- ---------- ---------- ---------- Ac5938a .....c..a. ..a....... .......... ....c..... ..g....... Dam ---------- ---------- ---------- ---------- ---------- Das ---------- ---------- ---------- ---------- ---------- Dao ---------- ---------- ---------- ---------- ---------- Ac3949lr ---------- ---------- ---------- ---------- ---------- Af081114 .....c..a. ..a....... .......... ....c.g... ..g....... Af081108 .....c..a. ..a....... .......... ....c..... ..g....... Af081110 .....c..a. ..a....... .......... ....c..... ..g....... Af081104 .....c..a. ..a....... .......... ....c..... ..g....... Af081105 .....c..a. ..a....... .......... ....c..... ..g....... Tfnode2 .....c..a. ..a....... .......... ....c..... ..g....... [ 3300 ' ' ' ' ] L1mdA2 CAATAATAGT GGGAGACTTC AACACACCAC TTTCTTCAAA GGACAGATCG Tfnode1 .......... .......... .......... ....ac...t .........a Ac3063a ---------- ---------- ---------- ---------- ---------- Ac5403c ---------- ---------- ---------- ---------- ---------- Af136179a ---------- ---------- ---------- ---------- ---------- Musrsl1r ---------- ---------- ---------- ---------- ---------- Ac5403lr ---------- ---------- ---------- ---------- ---------- Ac5938a .......... .......... .......... ....ac...t .........a Dam ---------- ---------- ---------- ---------- ---------- Das ---------- ---------- ---------- ---------- ---------- Dao ---------- ---------- ---------- ---------- ---------- Ac3949lr ---------- ---------- ---------- ---------- ---------- Af081114 .......... .......... .......... ....ac...t .........a Af081108 .......... .......... .......... ....ac...t .........a Af081110 .......... .......... .......... ....ac...t .........a Af081104 .......... .......... .......... ....ac...t .........a Af081105 .......... .......... .......... ....ac...t .........a Tfnode2 .......... .......... .......... ....ac...t .........a [ 3350 ' ' ' ' ] L1mdA2 TGGAAACAGA AACTAAACAG GGACACAGTG AAACTAACAG AAGTTATGAA Tfnode1 .......... .......... .......c.. .......... ....g..... Ac3063a ---------- ---------- ---------- ---------- ---------- Ac5403c ---------- ---------- ---------- ---------- ---------- Af136179a ---------- ---------- ---------- ---------- ---------- Musrsl1r ---------- ---------- ---------- ---------- ---------- Ac5403lr ---------- ---------- ---------- ---------- ---------- Ac5938a .......... .......... .......c.. .......... ....g..... Dam ---------- ---------- ---------- ---------- ---------- Das ---------- ---------- ---------- ---------- ---------- Dao ---------- ---------- ---------- ---------- ---------- Ac3949lr ---------- ---------- ---------- ---------- ---------- Af081114 .......... .......... .......c.. .......t.. ....g..... Af081108 .......... .......... .......c.. .......... ....g..... Af081110 .......... .......... .......c.. .......... ....g..... Af081104 .......... .......... .......c.. .......... ....g..... Af081105 .......... .......... .......c.. .......... ....g..... Tfnode2 .......... .......... .......c.. .......... ....g..... [ 3400 ' ' ' ' ] L1mdA2 ACAAATGGAC CTGACAGATA TCTACAGAAC ATTTTATCCT AAAACAAAAG Tfnode1 .........t .......... .......... .......... .......... Ac3063a ---------- ---------- ---------- ---------- ---------- Ac5403c ---------- ---------- ---------- ---------- ---------- Af136179a ---------- ---------- ---------- ---------- ---------- Musrsl1r ---------- ---------- ---------- ---------- ---------- Ac5403lr ---------- ---------- ---------- ---------- ---------- Ac5938a .........t .......... .......... ......c... .......... Dam ---------- ---------- ---------- ---------- ---------- Das ---------- ---------- ---------- ---------- ---------- Dao ---------- ---------- ---------- ---------- ---------- Ac3949lr ---------- ---------- ---------- ---------- ---------- Af081114 .........t .......... .......... .......... .......... Af081108 .........t .......... .......... .......... .......... Af081110 .........t .......... .......... .......... .......... Af081104 ...g.....t .......... .......... .......... .......... Af081105 ...g.....t .......... .......... .......... .......... Tfnode2 .........t .......... .......... ......c... .......... [ 3450 ' ' ' ' ] L1mdA2 GATATACCTT CTTCTCAGCA CCTCACGGGA CCTTCTCCAA AATTGACCAT Tfnode1 .......... .......... .....t..t. .......... .........c Ac3063a ---------- ---------- ---------- ---------- ---------- Ac5403c ---------- ---------- ---------- ---------- ---------- Af136179a ---------- ---------- ---------- ---------- ---------- Musrsl1r ---------- ---------- ---------- ---------- ---------- Ac5403lr ---------- ---------- ---------- ---------- ---------- Ac5938a .......... .......... .....t..t. .......... .........c Dam ---------- ---------- ---------- ---------- ---------- Das ---------- ---------- ---------- ---------- ---------- Dao ---------- ---------- ---------- ---------- ---------- Ac3949lr ---------- ---------- ---------- ---------- ---------- Af081114 .......... .......... .....t..t. .......... .........c Af081108 .......... .......... .....t..t. .......... .........c Af081110 .......... .......... .....t..t. .......... .........c Af081104 .......... .......... .....t..t. .......... .........c Af081105 .......... .......... .....t..t. .......... .........c Tfnode2 .......... .......... .....t..t. .......... .........c [ 3500 ' ' ' ' ] L1mdA2 ATAATTGGTC ACAAAACAGG CCTCAATAGA TACAAAAATA TTGAAATTGT Tfnode1 .....a.... .....t.... ......c... .t........ .......... Ac3063a ---------- ---------- ---------- ---------- ---------- Ac5403c ---------- ---------- ---------- ---------- ---------- Af136179a ---------- ---------- ---------- ---------- ---------- Musrsl1r ---------- ---------- ---------- ---------- ---------- Ac5403lr ---------- ---------- ---------- ---------- ---------- Ac5938a .....a.... .....t.... ......c... .......... .......... Dam ---------- ---------- ---------- ---------- ---------- Das ---------- ---------- ---------- ---------- ---------- Dao ---------- ---------- ---------- ---------- ---------- Ac3949lr ---------- ---------- ---------- ---------- ---------- Af081114 .....a.... .....t.... ......c... .t........ .......... Af081108 .....a.... .....t.... ......c... .tt....... .......... Af081110 .....a.... .....t.... ......c... .t........ .......... Af081104 .....a.... .....t.... ......c... .t........ .......... Af081105 .....a.... .....t.... ......c... .t........ .......... Tfnode2 .....a.... .....t.... ......c... .t........ .......... [ 3550 ' ' ' ' ] L1mdA2 CCCATGTATC CTATCAGACC ACCATGGCCT AAGACTGATC TTCAATAACA Tfnode1 .......... ........t. ......ca.. ...g...... .......... Ac3063a ---------- ---------- ---------- ---------- ---------- Ac5403c ---------- ---------- ---------- ---------- ---------- Af136179a ---------- ---------- ---------- ---------- ---------- Musrsl1r ---------- ---------- ---------- ---------- ---------- Ac5403lr ---------- ---------- ---------- ---------- ---------- Ac5938a .......... ........t. ......ca.. ...g...... .......... Dam ---------- ---------- ---------- ---------- ---------- Das ---------- ---------- ---------- ---------- ---------- Dao ---------- ---------- ---------- ---------- ---------- Ac3949lr ---------- ---------- ---------- ---------- ---------- Af081114 .......... ........t. ......ca.. ...g...... .......... Af081108 .......... ........t. ......ca.. ...g...... .......... Af081110 .......... ........t. ......ca.. ...g...... .......... Af081104 .......... ........t. ......ca.. ...g...... .......... Af081105 .......... ........t. ......ca.. ...g...... .......... Tfnode2 .......... ........t. ......ca.. ...g...... .......... [ 3600 ' ' ' ' ] L1mdA2 ACATAAATAA TGGAAAGCCA ACATTCACGT GGAAACTGAA TAACACTCTT Tfnode1 .a........ ca........ ........a. .......... c......... Ac3063a ---------- ---------- ---------- ---------- ---------- Ac5403c ---------- ---------- ---------- ---------- ---------- Af136179a ---------- ---------- ---------- ---------- ---------- Musrsl1r ---------- ---------- ---------- ---------- ---------- Ac5403lr ---------- ---------- ---------- ---------- ---------- Ac5938a .a........ ca........ ........a. .......... c......... Dam ---------- ---------- ---------- ---------- ---------- Das ---------- ---------- ---------- ---------- ---------- Dao ---------- ---------- ---------- ---------- ---------- Ac3949lr ---------- ---------- ---------- ---------- ---------- Af081114 .a........ ca........ ........a. .......... c......... Af081108 .a........ ca........ ........a. .......... c......... Af081110 .a........ ca........ ........a. .......... c......... Af081104 .a........ ca........ ...c...... .......... c......... Af081105 .a........ ca........ ...c...... .......... c......... Tfnode2 .a........ ca........ ........a. .......... c......... [ 3650 ' ' ' ' ] L1mdA2 CTCAATGATA CCTTGGTCAA GGAAGGAATA AAGAAAGAAA TTAAAGACTT Tfnode1 .......... .......... .......... .......... .......... Ac3063a ---------- ---------- ---------- ---------- ---------- Ac5403c ---------- ---------- ---------- ---------- ---------- Af136179a ---------- ---------- ---------- ---------- ---------- Musrsl1r ---------- ---------- ---------- ---------- ---------- Ac5403lr ---------- ---------- ---------- ---------- ---------- Ac5938a .......... .......... .......... .......... .......... Dam ---------- ---------- ---------- ---------- ---------- Das ---------- ---------- ---------- ---------- ---------- Dao ---------- ---------- ---------- ---------- ---------- Ac3949lr ---------- ---------- ---------- ---------- ---------- Af081114 .......... .......... .......... .......... .......... Af081108 .......... .......... .......... .......... .......... Af081110 .......... .......... .......... .......... .......... Af081104 .......... .......... .......... .......... .......... Af081105 .......... .......... .......... .......... .......... Tfnode2 .......... .......... .......... .......... .......... [ 3700 ' ' ' ' ] L1mdA2 TTTAGAGTTT AATGAAAATG AAGCCACAAC GTACCCAAAC CTATGGGACA Tfnode1 .......... .......... .......... .......... ..t....... Ac3063a ---------- ---------- ---------- ---------- ---------- Ac5403c ---------- ---------- ---------- ---------- ---------- Af136179a ---------- ---------- ---------- ---------- ---------- Musrsl1r ---------- ---------- ---------- ---------- ---------- Ac5403lr ---------- ---------- ---------- ---------- ---------- Ac5938a .......... .......... .......... .......... ..t....... Dam ---------- ---------- ---------- ---------- ---------- Das ---------- ---------- ---------- ---------- ---------- Dao ---------- ---------- ---------- ---------- ---------- Ac3949lr ---------- ---------- ---------- ---------- ---------- Af081114 .......... .......... .......... .......... ..t....... Af081108 .......... .......... .......... .......... ..t....... Af081110 .......... .......... .......... .......... ..t....... Af081104 .......... .......... .......... .......... ..t....... Af081105 .......... .......... .......... .......... ..t....... Tfnode2 .......... .......... .......... .......... ..t....... [ 3750 ' ' ' ' ] L1mdA2 CAATGAAAGC ATTTCTAAGA GGGAAACTCA TAGCGCTGAG TGCCTCCAAG Tfnode1 .......... .......... .......... ....ta.... .....t.... Ac3063a ---------- ---------- ---------- ---------- ---------- Ac5403c ---------- ---------- ---------- ---------- ---------- Af136179a ---------- ---------- ---------- ---------- ---------- Musrsl1r ---------- ---------- ---------- ---------- ---------- Ac5403lr ---------- ---------- ---------- ---------- ---------- Ac5938a .......... .......... .......... ....ta.... .....t.... Dam ---------- ---------- ---------- ---------- ---------- Das ---------- ---------- ---------- ---------- ---------- Dao ---------- ---------- ---------- ---------- ---------- Ac3949lr ---------- ---------- ---------- ---------- ---------- Af081114 .......... .......... .......... ....ta.... .....t.... Af081108 .......... .......... .......... ....ta.... .....t.... Af081110 .......... .......... .......... ....ta.... .....t.... Af081104 .......... .......... .......... ....ta.... .....t.... Af081105 .......... .......... .......... ....ta.... .....t.... Tfnode2 .......... .......... .......... ....ta.... .....t.... [ 3800 ' ' ' ' ] L1mdA2 AAGAAACGGG AGACAGCACA TACTAGCAGC TTGACAACAC ATCTAAAAGC Tfnode1 ..a....... ...g...... .......... .......... .......... Ac3063a ---------- ---------- ---------- ---------- ---------- Ac5403c ---------- ---------- ---------- ---------- ---------- Af136179a ---------- ---------- ---------- ---------- ---------- Musrsl1r ---------- ---------- ---------- ---------- ---------- Ac5403lr ---------- ---------- ---------- ---------- ---------- Ac5938a ..a....... ...g...... .......... .......... .......... Dam ---------- ---------- ---------- ---------- ---------- Das ---------- ---------- ---------- ---------- ---------- Dao ---------- ---------- ---------- ---------- ---------- Ac3949lr ---------- ---------- ---------- ---------- ---------- Af081114 ..a....... ...g...... .......... .......... .......... Af081108 ..a....... ...g...... .......... .......... .......... Af081110 ..a....... ...g...... .......... .......... .......... Af081104 ..a....... ...g...... .......... .......... .......... Af081105 ..a....... ...g...... .......... .......... .......... Tfnode2 ..a....... ...g...... .......... .......... .......... [ 3850 ' ' ' ' ] L1mdA2 CCTAGAAAAA AAGGAAGCAA ATTCACCCAA GAGGAGTAGA CGGCAGGAAA Tfnode1 t......... .......... .......... .......... .......... Ac3063a ---------- ---------- ---------- ---------- ---------- Ac5403c ---------- ---------- ---------- ---------- ---------- Af136179a ---------- ---------- ---------- ---------- ---------- Musrsl1r ---------- ---------- ---------- ---------- ---------- Ac5403lr ---------- ---------- ---------- ---------- ---------- Ac5938a t......... .......... .......... .......... .......... Dam ---------- ---------- ---------- ---------- ---------- Das ---------- ---------- ---------- ---------- ---------- Dao ---------- ---------- ---------- ---------- ---------- Ac3949lr ---------- ---------- ---------- ---------- ---------- Af081114 t......... .......... .......... .......... .......... Af081108 t......... .......... .......... .......... t......... Af081110 t......... .......... .......... .......... .......... Af081104 t......... .......... .......... .......... .......... Af081105 t......... .......... .......... .......... .......... Tfnode2 t......... .......... .......... .......... .......... [ 3900 ' ' ' ' ] L1mdA2 TAATCAAACT CAGGGGTGAA ATCAACCAAG TGGAAACAAG AAGAACTATT Tfnode1 .......... .......... .......... .......... .......... Ac3063a ---------- ---------- ---------- ---------- ---------- Ac5403c ---------- ---------- ---------- ---------- ---------- Af136179a ---------- ---------- ---------- ---------- ---------- Musrsl1r ---------- ---------- ---------- ---------- ---------- Ac5403lr ---------- ---------- ---------- ---------- ---------- Ac5938a .......... .......... .......... .......... .......... Dam ---------- ---------- ---------- ---------- ---------- Das ---------- ---------- ---------- ---------- ---------- Dao ---------- ---------- ---------- ---------- ---------- Ac3949lr ---------- ---------- ---------- ---------- ---------- Af081114 .......... .......... .......... .......... .......... Af081108 .......... .......... .......... .......... .......... Af081110 .......... .......... .......... .......... .......... Af081104 .......... .......... .......... .......... .......... Af081105 .......... .......... .......... .......... .......... Tfnode2 .......... .......... .......... .......... .......... [ 3950 ' ' ' ' ] L1mdA2 CAAAGAATTA ACCAAACGAG GAGTTGGTTC TTTGAGAAAA TCAACAAGAT Tfnode1 .......... .......... .......... .......... .......... Ac3063a ---------- ---------- ---------- ---------- ---------- Ac5403c ---------- ---------- ---------- ---------- ---------- Af136179a ---------- ---------- ---------- ---------- ---------- Musrsl1r ---------- ---------- ---------- ---------- ---------- Ac5403lr ---------- ---------- ---------- ---------- ---------- Ac5938a .......... .......... .......... .......... .......... Dam ---------- ---------- ---------- ---------- ---------- Das ---------- ---------- ---------- ---------- ---------- Dao ---------- ---------- ---------- ---------- ---------- Ac3949lr ---------- ---------- ---------- ---------- ---------- Af081114 .......... .......... .......... .......... .......... Af081108 .......... ......g... .......... .......... .......... Af081110 .......... .......... .......... .......... .........c Af081104 .......... .......... .......... .......... .......... Af081105 .......... .......... .......... .......... .......... Tfnode2 .......... .......... .......... .......... .......... [ 4000 ' ' ' ' ] L1mdA2 AGATAAACCC TTAGCTAGAC TCACTAAAGG GCACAGGGAC AAAATCCTAA Tfnode1 .......... .......... .......... .......... .......... Ac3063a ---------- ---------- ---------- ---------- ---------- Ac5403c ---------- ---------- ---------- ---------- ---------- Af136179a ---------- ---------- ---------- ---------- ---------- Musrsl1r ---------- ---------- ---------- ---------- ---------- Ac5403lr ---------- ---------- ---------- ---------- ---------- Ac5938a .......... .......... .......... .......... .......... Dam ---------- ---------- ---------- ---------- ---------- Das ---------- ---------- ---------- ---------- ---------- Dao ---------- ---------- ---------- ---------- ---------- Ac3949lr ---------- ---------- ---------- ---------- ---------- Af081114 .......... .......... .......... .......... .......... Af081108 .......... .......... .......... .......... .......... Af081110 .......... .......... .......... .......... .......... Af081104 .......... .......... .......... .......... .......... Af081105 .......... .......... .......... .......... .......... Tfnode2 .......... .......... .......... .......... .......... [ 4050 ' ' ' ' ] L1mdA2 TTAACAAAAT CAGAAATGAA AAGGGAGACA TAACAACAGA TCCTGAAGAA Tfnode1 .......... .......... .......... .......... .......... Ac3063a ---------- ---------- ---------- ---------- ---------- Ac5403c ---------- ---------- ---------- ---------- ---------- Af136179a ---------- ---------- ---------- ---------- ---------- Musrsl1r ---------- ---------- ---------- ---------- ---------- Ac5403lr ---------- ---------- ---------- ---------- ---------- Ac5938a .......... .......... .......... .......... .......... Dam ---------- ---------- ---------- ---------- ---------- Das ---------- ---------- ---------- ---------- ---------- Dao ---------- ---------- ---------- ---------- ---------- Ac3949lr ---------- ---------- ---------- ---------- ---------- Af081114 .......... .......... .......... .......... .......... Af081108 .......... .....c.... .......... .......... .......... Af081110 .......... .......... .......... .......... .......... Af081104 .......... .......... .......... .......... .......... Af081105 .......... .......... .......... .......... .......... Tfnode2 .......... .......... .......... .......... .......... [ 4100 ' ' ' ' ] L1mdA2 ATCCAAAACA CCATCAGATC CTTCTACAAA AGGCTATACT CAACAAAACT Tfnode1 .......... .......... .......... .......... .......... Ac3063a ---------- ---------- ---------- ---------- ---------- Ac5403c ---------- ---------- ---------- ---------- ---------- Af136179a ---------- ---------- ---------- ---------- ---------- Musrsl1r ---------- ---------- ---------- ---------- ---------- Ac5403lr ---------- ---------- ---------- ---------- ---------- Ac5938a .......... .......... .......... .......... .......... Dam ---------- ---------- ---------- ---------- ---------- Das ---------- ---------- ---------- ---------- ---------- Dao ---------- ---------- ---------- ---------- ---------- Ac3949lr ---------- ---------- ---------- ---------- ---------- Af081114 .......... .......... .......... .......... .......... Af081108 .......... .......... .......... .......... .......... Af081110 .......... .a........ .......... .......... .......... Af081104 .......... .......... .......... .......... .......... Af081105 .......... .......... .......... .......... .......... Tfnode2 .......... .......... .......... .......... .......... [ 4150 ' ' ' ' ] L1mdA2 GGAAAACCTG GACGAAATGG ACAAATTTCT GGACAGATAC CAGGTACCAA Tfnode1 .......... .......... .......... .......... .......... Ac3063a ---------- ---------- ---------- ---------- ---------- Ac5403c ---------- ---------- ---------- ---------- ---------- Af136179a ---------- ---------- ---------- ---------- ---------- Musrsl1r ---------- ---------- ---------- ---------- ---------- Ac5403lr ---------- ---------- ---------- ---------- ---------- Ac5938a .......... .......... .......... .......... .......... Dam ---------- ---------- ---------- ---------- ---------- Das ---------- ---------- ---------- ---------- ---------- Dao ---------- ---------- ---------- ---------- ---------- Ac3949lr ---------- ---------- ---------- ---------- ---------- Af081114 .......... .......... .......... .......... .......... Af081108 .......... .......... .......... .......... .......... Af081110 .......... .......... .......... .......... .......... Af081104 .......... .......... .......... .......... .......... Af081105 .......... .......... .......... .......... .......... Tfnode2 .......... .......... .......... .......... .......... [ 4200 ' ' ' ' ] L1mdA2 AGTTGAATCA GGATCAAGTT GACCATCTAA ACAGTCCCAT ATCACCTAAA Tfnode1 .......... .......... ....t..... .......... ...c...... Ac3063a ---------- ---------- ---------- ---------- ---------- Ac5403c ---------- ---------- ---------- ---------- ---------- Af136179a ---------- ---------- ---------- ---------- ---------- Musrsl1r ---------- ---------- ---------- ---------- ---------- Ac5403lr ---------- ---------- ---------- ---------- ---------- Ac5938a .......... .......... ....t..... .......... ...c...... Dam ---------- ---------- ---------- ---------- ---------- Das ---------- ---------- ---------- ---------- ---------- Dao ---------- ---------- ---------- ---------- ---------- Ac3949lr ---------- ---------- ---------- ---------- ---------- Af081114 .......... .......... ....t..... .......... ...c...... Af081108 .......... .......... ....t..... .......... ...c...... Af081110 .......... .......... ....t..... .......... ...c...... Af081104 .......... .......... ....t..... .......... ...c...... Af081105 .......... .......... ....t..... .......... ...c...... Tfnode2 .......... .......... ....t..... .......... ...c...... [ 4250 ' ' ' ' ] L1mdA2 GAAATAGAAG CAGTTATTAA TAGTCTCCCA ACCAAAAAAA GCCCAGGACC Tfnode1 .......... .......... .......... g......... .......... Ac3063a ---------- ---------- ---------- ---------- ---------- Ac5403c ---------- ---------- ---------- ---------- ---------- Af136179a ---------- ---------- ---------- ---------- ---------- Musrsl1r ---------- ---------- ---------- ---------- ---------- Ac5403lr ---------- ---------- ---------- ---------- ---------- Ac5938a ....g..... .......... .......... g......... .......... Dam ---------- ---------- ---------- ---------- ---------- Das ---------- ---------- ---------- ---------- ---------- Dao ---------- ---------- ---------- ---------- ---------- Ac3949lr ---------- ---------- ---------- ---------- ---------- Af081114 .......... .......... .......... g......... .......... Af081108 .......... .......... .......... g......... .......... Af081110 .......... .......... .......... g......... .......... Af081104 .......... .......... .......... g......... .......... Af081105 .......... .......... .......... g......... .......... Tfnode2 .......... .......... .......... g......... .......... [ 4300 ' ' ' ' ] L1mdA2 AGATGGGTTT AGTGCAGAGT TCTATCAGAC CTTCAAAGAA GATCTAATTC Tfnode1 ...c...... .......... .......... .......... .......c.. Ac3063a ---------- ---------- ---------- ---------- ---------- Ac5403c ---------- ---------- ---------- ---------- ---------- Af136179a ---------- ---------- ---------- ---------- ---------- Musrsl1r ---------- ---------- ---------- ---------- ---------- Ac5403lr ---------- ---------- ---------- ---------- ---------- Ac5938a ...c...... .......... .......... .......... .......ca. Dam ---------- ---------- ---------- ---------- ---------- Das ---------- ---------- ---------- ---------- ---------- Dao ---------- ---------- ---------- ---------- ---------- Ac3949lr ---------- ---------- ---------- ---------- ---------- Af081114 ...c...... .......... .......... .......... .......c.. Af081108 ...c...... .......... ....a..... .......... .......c.. Af081110 ...c...... .......... .......... .......... .......c.. Af081104 ...c...... .......... .......... .......... .......c.. Af081105 ...c...... .......... .......... .......... .......c.. Tfnode2 ...c...... .......... .......... .......... .......c.. [ 4350 ' ' ' ' ] L1mdA2 CAATTCTGCA CAAACTATTT CACAAAATAG AAGTAGAAGG TACTCTACCC Tfnode1 ..g....... ......t... .....g.... .......... ..t....... Ac3063a ---------- ---------- ---------- ---------- ---------- Ac5403c ---------- ---------- ---------- ---------- ---------- Af136179a ---------- ---------- ---------- ---------- ---------- Musrsl1r ---------- ---------- ---------- ---------- ---------- Ac5403lr ---------- ---------- ---------- ---------- ---------- Ac5938a ..g....... ......t... .....g.... .......... ..t....... Dam ---------- ---------- ---------- ---------- ---------- Das ---------- ---------- ---------- ---------- ---------- Dao ---------- ---------- ---------- ---------- ---------- Ac3949lr ---------- ---------- ---------- ---------- ---------- Af081114 ..g....... ......t... .....g.... .......... ..t....... Af081108 ..g....... ......t... .....g.... .......... ..t....... Af081110 ..g....... ......t... .....g.... .......... ..t....... Af081104 ..g....... ......t... .....g.... .......... ..t....... Af081105 ..g....... ......t... .....g.... .......... ..t....... Tfnode2 ..g....... ......t... .....g.... .......... ..t....... [ 4400 ' ' ' ' ] L1mdA2 AACTCATTTT ATGAAGCCAC TATTACTCTG ATACCTAAAC CACAGAAAGA Tfnode1 .......... .......... .......... .......... .......... Ac3063a ---------- ---------- ---------- ---------- ---------- Ac5403c ---------- ---------- ---------- ---------- ---------- Af136179a ---------- ---------- ---------- ---------- ---------- Musrsl1r ---------- ---------- ---------- ---------- ---------- Ac5403lr ---------- ---------- ---------- ---------- ---------- Ac5938a .......... .......... .......... .......... .......... Dam ---------- ---------- ---------- ---------- ---------- Das ---------- ---------- ---------- ---------- ---------- Dao ---------- ---------- ---------- ---------- ---------- Ac3949lr ---------- ---------- ---------- ---------- ---------- Af081114 .......... .......... .......... .......... .......... Af081108 .......... .......... .......... .......... .......... Af081110 .......... .......... .......... .......... .......... Af081104 .......... .......... .......... .......... .......... Af081105 .......... .......... .......... .......... .......... Tfnode2 .......... .......... .......... .......... .......... [ 4450 ' ' ' ' ] L1mdA2 TCCAACAAAG ATAGAGAACT TCAGACCAAT TTCTCTTATG AATATCGATG Tfnode1 .......... .......... .......... .......... ..c....... Ac3063a ---------- ---------- ---------- ---------- ---------- Ac5403c ---------- ---------- ---------- ---------- ---------- Af136179a ---------- ---------- ---------- ---------- ---------- Musrsl1r ---------- ---------- ---------- ---------- ---------- Ac5403lr ---------- ---------- ---------- ---------- ---------- Ac5938a .......... .......... .......... .......... ..c....... Dam ---------- ---------- ---------- ---------- ---------- Das ---------- ---------- ---------- ---------- ---------- Dao ---------- ---------- ---------- ---------- ---------- Ac3949lr ---------- ---------- ---------- ---------- ---------- Af081114 .......... .......... .......... .......... ..c....... Af081108 .......... .......... .......... .......... .......... Af081110 .......... .......... .......... .......... ..c..t.... Af081104 .......... .......... .......... .......... ..c....... Af081105 .......... .......... .......... .......... ..c....... Tfnode2 .......... .......... .......... .......... ..c....... [ 4500 ' ' ' ' ] L1mdA2 CAAAAATCCT CAATAAAATT CTCGCTAACC GAATCCAAGA ACACATTAAA Tfnode1 .......t.. t......... .......... .......... .......... Ac3063a ---------- ---------- ---------- ---------- ---------- Ac5403c ---------- ---------- ---------- ---------- ---------- Af136179a ---------- ---------- ---------- ---------- ---------- Musrsl1r ---------- ---------- ---------- ---------- ---------- Ac5403lr ---------- ---------- ---------- ---------- ---------- Ac5938a .......... t......... .......... .......... .......... Dam ---------- ---------- ---------- ---------- ---------- Das ---------- ---------- ---------- ---------- ---------- Dao ---------- ---------- ---------- ---------- ---------- Ac3949lr ---------- ---------- ---------- ---------- ---------- Af081114 .......... t......... .......... .......... .......... Af081108 .......... t......... .......... .......... .......... Af081110 .......t.. t......... .......... .......... .......... Af081104 .......t.. t......... .......... .......... .......... Af081105 .......t.. t......... .......... .......... .......... Tfnode2 .......... t......... .......... .......... .......... [ 4550 ' ' ' ' ] L1mdA2 GCAATCATCC ATCCTGACCA AGTAGGTTTT ATTCCAGGGA TGCAGGGATG Tfnode1 .......... .......... .......... .......... .......... Ac3063a ---------- ---------- ---------- ---------- ---------- Ac5403c ---------- ---------- ---------- ---------- ---------- Af136179a ---------- ---------- ---------- ---------- ---------- Musrsl1r ---------- ---------- ---------- ---------- ---------- Ac5403lr ---------- ---------- ---------- ---------- ---------- Ac5938a .......... .......... .......... .......... .......... Dam ---------- ---------- ---------- ---------- ---------- Das ---------- ---------- ---------- ---------- ---------- Dao ---------- ---------- ---------- ---------- ---------- Ac3949lr ---------- ---------- ---------- ---------- ---------- Af081114 .......... .......... .......... .......... .......... Af081108 .......... .......... .......... .......... .......... Af081110 .......... .......... .......... .......... .......... Af081104 .......... .......... .......... .......... .......... Af081105 .......... .......... .......... .......... .......... Tfnode2 .......... .......... .......... .......... .......... [ 4600 ' ' ' ' ] L1mdA2 GTTTAATATA CGAAAATCCA TCAATGTAAT CCATTATATA AACAAACTCA Tfnode1 .......... .......... .......... .......... .......... Ac3063a ---------- ---------- ---------- ---------- ---------- Ac5403c ---------- ---------- ---------- ---------- ---------- Af136179a ---------- ---------- ---------- ---------- ---------- Musrsl1r ---------- ---------- ---------- ---------- ---------- Ac5403lr ---------- ---------- ---------- ---------- ---------- Ac5938a .......... .......... .......... .......... .......... Dam ---------- ---------- ---------- ---------- ---------- Das ---------- ---------- ---------- ---------- ---------- Dao ---------- ---------- ---------- ---------- ---------- Ac3949lr ---------- ---------- ---------- ---------- ---------- Af081114 .......... .......... .......... .......... .......... Af081108 .......... .......... .......... .......... .......... Af081110 .......... .......... ......c... .......... .......... Af081104 .......... .......... .......... .......... .......... Af081105 .......... .......... .......... .......... .......... Tfnode2 .......... .......... .......... .......... .......... [ 4650 ' ' ' ' ] L1mdA2 AAGACAAAAA CCACATGATC ATCTCGTTAG ATGCAGAAAA AGCATTTGAC Tfnode1 .......... .......... .......... .......... .......... Ac3063a ---------- ---------- ---------- ---------- ---------- Ac5403c ---------- ---------- ---------- ---------- ---------- Af136179a ---------- ---------- ---------- ---------- ---------- Musrsl1r ---------- ---------- ---------- ---------- ---------- Ac5403lr ---------- ---------- ---------- ---------- ---------- Ac5938a .......... .......... .......... .......... .......... Dam ---------- ---------- ---------- ---------- ---------- Das ---------- ---------- ---------- ---------- ---------- Dao ---------- ---------- ---------- ---------- ---------- Ac3949lr ---------- ---------- ---------- ---------- ---------- Af081114 .......... .......... .......... .......... .......... Af081108 .......... .......... .......... .......... .......... Af081110 .......... .......... .......... .......... .......... Af081104 .......... .......... .......... .......... .......... Af081105 .......... .......... .......... .......... .......... Tfnode2 .......... .......... .......... .......... .......... [ 4700 ' ' ' ' ] L1mdA2 AAGATCCAAC ACCCATTCAT GATAAAAGTT TTGGAAAGAT CAGGAATTCA Tfnode1 .......... .......... .......... c......... .......... Ac3063a ---------- ---------- ---------- ---------- ---------- Ac5403c ---------- ---------- ---------- ---------- ---------- Af136179a ---------- ---------- ---------- ---------- ---------- Musrsl1r ---------- ---------- ---------- ---------- ---------- Ac5403lr ---------- ---------- ---------- ---------- ---------- Ac5938a .......... .......... .......... c......... .......... Dam ---------- ---------- ---------- ---------- ---------- Das ---------- ---------- ---------- ---------- ---------- Dao ---------- ---------- ---------- ---------- ---------- Ac3949lr ---------- ---------- ---------- ---------- ---------- Af081114 .......... .......... .......... c......... .......... Af081108 .......... .......... .......... c......... .......... Af081110 .......... .......... .......... c......... .......... Af081104 .......... .......... .......... c......... .......... Af081105 .......... .......... .......... c......... .......... Tfnode2 .......... .......... .......... c......... .......... [ 4750 ' ' ' ' ] L1mdA2 AGGCCCATAC CTAAACATGA TAAAAGCAAT CTACAGCAAA CCAGTAGCCA Tfnode1 .....a.... .......... .......... .......... .......... Ac3063a ---------- ---------- ---------- ---------- ---------- Ac5403c ---------- ---------- ---------- ---------- ---------- Af136179a ---------- ---------- ---------- ---------- ---------- Musrsl1r ---------- ---------- ---------- ---------- ---------- Ac5403lr ---------- ---------- ---------- ---------- ---------- Ac5938a .....a.... .......... .......... .......... .......... Dam ---------- ---------- ---------- ---------- ---------- Das ---------- ---------- ---------- ---------- ---------- Dao ---------- ---------- ---------- ---------- ---------- Ac3949lr ---------- ---------- ---------- ---------- ---------- Af081114 .....a.... .......... .......... .......... .......... Af081108 .....t.... .......... .......... .......... .......... Af081110 .....a.... .......... .......... .......... .......... Af081104 .....a.... .......... .......... .......... .......... Af081105 .....a.... .......... .......... .......... .......... Tfnode2 .....a.... .......... .......... .......... .......... [ 4800 ' ' ' ' ] L1mdA2 ACATCAAAGT AAATGGAGAG AAGCTGGAAG CAATCCCACT AAAATCAGGG Tfnode1 .......... .......... .......... .......... .......... Ac3063a ---------- ---------- ---------- ---------- ---------- Ac5403c ---------- ---------- ---------- ---------- ---------- Af136179a ---------- ---------- ---------- ---------- ---------- Musrsl1r ---------- ---------- ---------- ---------- ---------- Ac5403lr ---------- ---------- ---------- ---------- ---------- Ac5938a .......... .......... .......... .......... .......... Dam ---------- ---------- ---------- ---------- ---------- Das ---------- ---------- ---------- ---------- ---------- Dao ---------- ---------- ---------- ---------- ---------- Ac3949lr ---------- ---------- ---------- ---------- ---------- Af081114 .......... .......... .........a .......... .......... Af081108 .......... .......... .......... .......... ....g..... Af081110 .......... .......... .......... .......... .......... Af081104 .......... .......... .......... .......... .......... Af081105 .......... .......... .......... .......... .......... Tfnode2 .......... .......... .......... .......... .......... [ 4850 ' ' ' ' ] L1mdA2 ACTAGACAAG GCTGCCCACT TTCTCCCTAC CTTTTCAACA TAGTACTTGA Tfnode1 .......... .......... .......... .......... .......... Ac3063a ---------- ---------- ---------- ---------- ---------- Ac5403c ---------- ---------- ---------- ---------- ---------- Af136179a ---------- ---------- ---------- ---------- ---------- Musrsl1r ---------- ---------- ---------- ---------- ---------- Ac5403lr ---------- ---------- ---------- ---------- ---------- Ac5938a .......... .......... .......... .......... .......... Dam ---------- ---------- ---------- ---------- ---------- Das ---------- ---------- ---------- ---------- ---------- Dao ---------- ---------- ---------- ---------- ---------- Ac3949lr ---------- ---------- ---------- ---------- ---------- Af081114 .......... .......... .......... .......... .......... Af081108 .......... .......... .......... .......... .......... Af081110 .......... .......... .......... .......... .......... Af081104 .......... .......... .......... .......... .......... Af081105 .......... .......... .......... .......... .......... Tfnode2 .......... .......... .......... .......... .......... [ 4900 ' ' ' ' ] L1mdA2 AGTATTAGCC AGAGCAATTC GACAACAAAA GGAGATCAAG GGGATACAAA Tfnode1 .......... .......... .......... .......... .......... Ac3063a ---------- ---------- ---------- ---------- ---------- Ac5403c ---------- ---------- ---------- ---------- ---------- Af136179a ---------- ---------- ---------- ---------- ---------- Musrsl1r ---------- ---------- ---------- ---------- ---------- Ac5403lr ---------- ---------- ---------- ---------- ---------- Ac5938a .......... .......... .......... .......... .......... Dam ---------- ---------- ---------- ---------- ---------- Das ---------- ---------- ---------- ---------- ---------- Dao ---------- ---------- ---------- ---------- ---------- Ac3949lr ---------- ---------- ---------- ---------- ---------- Af081114 .......... .......... a......... .......... .......... Af081108 .......... .......... .......... .......... .......... Af081110 .......... .......... .......... .......... .......... Af081104 .......... .......... .......... .......... .......... Af081105 .......... .......... .......... .......... .......... Tfnode2 .......... .......... .......... .......... .......... [ 4950 ' ' ' ' ] L1mdA2 TTGGAAAAGA GGAAGTCAAA ATATCACTTC TTGCAGATGA TATGATAGTA Tfnode1 .......... .......... .........t .......... .......... Ac3063a ---------- ---------- ---------- ---------- ---------- Ac5403c ---------- ---------- ---------- ---------- ---------- Af136179a ---------- ---------- ---------- ---------- ---------- Musrsl1r ---------- ---------- ---------- ---------- ---------- Ac5403lr ---------- ---------- ---------- ---------- ---------- Ac5938a .......... .......... .........t .......... .......... Dam ---------- ---------- ---------- ---------- ---------- Das ---------- ---------- ---------- ---------- ---------- Dao ---------- ---------- ---------- ---------- ---------- Ac3949lr ---------- ---------- ---------- ---------- ---------- Af081114 .......... .......... .........t .......... .......... Af081108 .......... .......... .........t .......... .......... Af081110 .......... .......... .........t .......... .......... Af081104 .......... .......... .........t .......... .......... Af081105 .......... .......... .........t .......... .......... Tfnode2 .......... .......... .........t .......... .......... [ 5000 ' ' ' ' ] L1mdA2 TATATAAGTG ACCCTAAAAA TTCTACCAGA GAACTCCTAA ACCTGATAAA Tfnode1 .......... .......... ...c.a.... .......... .......... Ac3063a ---------- ---------- ---------- ---------- ---------- Ac5403c ---------- ---------- ---------- ---------- ---------- Af136179a ---------- ---------- ---------- ---------- ---------- Musrsl1r ---------- ---------- ---------- ---------- ---------- Ac5403lr ---------- ---------- ---------- ---------- ---------- Ac5938a .......... .......... ...c.a.... .......... .......... Dam ---------- ---------- ---------- ---------- ---------- Das ---------- ---------- ---------- ---------- ---------- Dao ---------- ---------- ---------- ---------- ---------- Ac3949lr ---------- ---------- ---------- ---------- ---------- Af081114 .......... .......... ...c.a.... .......... .......... Af081108 .......... .......... .........g .......... .......... Af081110 .......... .......... ...c.a.... .......... .......... Af081104 .......... .......... ...c.a.... .......... .......... Af081105 .......... .......... ...c.a.... .......... .......... Tfnode2 .......... .......... ...c.a.... .......... .......... [ 5050 ' ' ' ' ] L1mdA2 CAGCTTCGGT GAAGTAGTTG GATATAAAAT AAACTCAAAC AAGTCAATGG Tfnode1 .......... .......c.. .......... t......... .......... Ac3063a ---------- ---------- ---------- ---------- ---------- Ac5403c ---------- ---------- ---------- ---------- ---------- Af136179a ---------- ---------- ---------- ---------- ---------- Musrsl1r ---------- ---------- ---------- ---------- ---------- Ac5403lr ---------- ---------- ---------- ---------- ---------- Ac5938a .......... .......c.. .......... t......... .......... Dam ---------- ---------- ---------- ---------- ---------- Das ---------- ---------- ---------- ---------- ---------- Dao ---------- ---------- ---------- ---------- ---------- Ac3949lr ---------- ---------- ---------- ---------- ---------- Af081114 .......... .......c.. .......... t......... .......... Af081108 .......... .......c.. .......... .......... .......... Af081110 .......... .......c.. .......... t......... .......... Af081104 .......... .......c.. .......... t......... .......... Af081105 .......... .......c.. .......... t......... .......... Tfnode2 .......... .......c.. .......... t......... .......... [ 5100 ' ' ' ' ] L1mdA2 CCTTTCTCTA TACAAAGAAT AAACAGGCTG AGAAAGAAAT TAGGGAAACA Tfnode1 .......... c......... .......... .......... .......... Ac3063a ---------- ---------- ---------- ---------- ---------- Ac5403c ---------- ---------- ---------- ---------- ---------- Af136179a ---------- ---------- ---------- ---------- ---------- Musrsl1r ---------- ---------- ---------- ---------- ---------- Ac5403lr ---------- ---------- ---------- ---------- ---------- Ac5938a .......... c......... .......... .......... .......... Dam ---------- ---------- ---------- ---------- ---------- Das ---------- ---------- ---------- ---------- ---------- Dao ---------- ---------- ---------- ---------- ---------- Ac3949lr ---------- ---------- ---------- ---------- ---------- Af081114 .......... c......... .......... .......... .......... Af081108 .......... .......... .......... .......... ....a..... Af081110 .......... c......... .......... .......... .......... Af081104 .......... c......... .......... .......... .......... Af081105 .......... c......... .......... .......... .......... Tfnode2 .......... c......... .......... .......... .......... [ 5150 ' ' ' ' ] L1mdA2 ACACCCTTCT CAATAGTCAC AAATAATATA AAATATCTTG GCGTGACTCT Tfnode1 .......... ......c... .......... ........c. .......... Ac3063a ---------- ---------- ---------- ---------- ---------- Ac5403c ---------- ---------- ---------- ---------- ---------- Af136179a ---------- ---------- ---------- ---------- ---------- Musrsl1r ---------- ---------- ---------- ---------- ---------- Ac5403lr ---------- ---------- ---------- ---------- ---------- Ac5938a .......... ......c... .......... ........c. ..a....... Dam ---------- ---------- ---------- ---------- ---------- Das ---------- ---------- ---------- ---------- ---------- Dao ---------- ---------- ---------- ---------- ---------- Ac3949lr ---------- ---------- ---------- ---------- ---------- Af081114 .......... ......c... .......... ........c. .......... Af081108 .......... .......... .......... .......... .......... Af081110 .......... ......c... .......... ........c. .......... Af081104 .......... ......c... .......... ........c. .......... Af081105 .......... ......c... .......... ........c. .......... Tfnode2 .......... ......c... .......... ........c. .......... [ 5200 ' ' ' ' ] L1mdA2 AACTAAGGAG GTGAAAGATC TGTATGATAA AAACTTCAAA TCTCTGAAGA Tfnode1 ...g.....a .......... .......... .........g ..c....... Ac3063a ---------- ---------- ---------- ---------- ---------- Ac5403c ---------- ---------- ---------- ---------- ---------- Af136179a ---------- ---------- ---------- ---------- ---------- Musrsl1r ---------- ---------- ---------- ---------- ---------- Ac5403lr ---------- ---------- ---------- ---------- ---------- Ac5938a ...g.....a .......... .......... .........g ..c....... Dam ---------- ---------- ---------- ---------- ---------- Das ---------- ---------- ---------- ---------- ---------- Dao ---------- ---------- ---------- ---------- ---------- Ac3949lr ---------- ---------- ---------- ---------- ---------- Af081114 ...g.....a .......... .......... .......... .......... Af081108 .....tt... .......... .......... ..t....... .......... Af081110 ...g.....a .......... .......... .........g ..c....... Af081104 ...g.....a .......... .......... .........g ..c....... Af081105 ...g.....a .......... .......... .........g ..c....... Tfnode2 ...g.....a .......... .......... .........g ..c....... [ 5250 ' ' ' ' ] L1mdA2 AAGAAATTAA AGAAGATCTC AGAAGATGGA AAGATCTCCC ATGCTCATGG Tfnode1 .......... .......... .......... .......... .......... Ac3063a ---------- ---------- ---------- ---------- ---------- Ac5403c ---------- ---------- ---------- ---------- ---------- Af136179a ---------- ---------- ---------- ---------- ---------- Musrsl1r ---------- ---------- ---------- ---------- ---------- Ac5403lr ---------- ---------- ---------- ---------- ---------- Ac5938a .......... .......... .......... .......... .......... Dam ---------- ---------- ---------- ---------- ---------- Das ---------- ---------- ---------- ---------- ---------- Dao ---------- ---------- ---------- ---------- ---------- Ac3949lr ---------- ---------- ---------- ---------- ---------- Af081114 .......... .......... .......... .......... .......... Af081108 .......... .......... .......... .......... .......... Af081110 .......... .......... .......... .......... .......... Af081104 .......... .......... .......... .......... .......... Af081105 .......... .......... .......... .......... .......... Tfnode2 .......... .......... .......... .......... .......... [ 5300 ' ' ' ' ] L1mdA2 ATTGGCAGGA TCAACATTGT AAAAATGGCT ATCTTGCCAA AAGCAATCTA Tfnode1 .......... c......... .......... .......... .......... Ac3063a ---------- ---------- ---------- ---------- ---------- Ac5403c ---------- ---------- ---------- ---------- ---------- Af136179a ---------- ---------- ---------- ---------- ---------- Musrsl1r ---------- ---------- ---------- ---------- ---------- Ac5403lr ---------- ---------- ---------- ---------- ---------- Ac5938a .......... c......... .......... .......... .......... Dam ---------- ---------- ---------- ---------- ---------- Das ---------- ---------- ---------- ---------- ---------- Dao ---------- ---------- ---------- ---------- ---------- Ac3949lr ---------- ---------- ---------- ---------- ---------- Af081114 .......... c......... .......... .......... .......... Af081108 .......... .......... .......... .......... .......... Af081110 .......... c......... .......... .......... .......... Af081104 .......... c......... .......... .......... .......... Af081105 .......... c......... .......... .......... .......... Tfnode2 .......... c......... .......... .......... .......... [ 5350 ' ' ' ' ] L1mdA2 CAGATTCAAT GCAATCCCCA TCAAAATTCC AACTCAATTC TTCAACGAAT Tfnode1 .......... .......... .t........ .......... .......... Ac3063a ---------- ---------- ---------- ---------- ---------- Ac5403c ---------- ---------- ---------- ---------- ---------- Af136179a ---------- ---------- ---------- ---------- ---------- Musrsl1r ---------- ---------- ---------- ---------- ---------- Ac5403lr ---------- ---------- --........ .......... .......... Ac5938a .......... .......... .t........ .......... .......... Dam ---------- ---------- ---------- ---------- ---------- Das ---------- ---------- ---------- ---------- ---------- Dao ---------- ---------- ---------- ---------- ---------- Ac3949lr ---------- ---------- ---------- ---------- ---------- Af081114 .......... .......... .t........ .......... .......... Af081108 .......... .......aa. .t........ .......... .......... Af081110 .......... .......... .t........ .......... .......... Af081104 .......... .......... .t........ .......... .......... Af081105 .......... .......... .t........ .......... .......... Tfnode2 .......... .......... .t........ .......... .......... [ 5400 ' ' ' ' ] L1mdA2 TGGAAGGAGC AATTTGCAAA TTTGTCTGGA ATAACAAAAA ACCTAGGATA Tfnode1 .a........ .......... ..ca...... .......... ...g...... Ac3063a ---------- ---------- ---------- ---------- ---------- Ac5403c ---------- ---------- ---------- ---------- ---------- Af136179a ---------- ---------- ---------- ---------- ---------- Musrsl1r ---------- ---------- ---------- ---------- ---------- Ac5403lr .a........ .......... ..ca...... .......... ...g...... Ac5938a .a........ .......... ..ca...... .......... ...g...... Dam ---------- ---------- ---------- ---------- ---------- Das ---------- ---------- ---------- ---------- ---------- Dao ---------- ---------- ---------- ---------- ---------- Ac3949lr ---------- ---------- ---------- ---------- ---------- Af081114 .a........ .......... ..ca...... .......... ...g...... Af081108 .a........ .......... ..ca...... .......... ...g...... Af081110 .a........ .......... ..ca...... .......... ...g...... Af081104 .a........ .......... ..ca...... .......... ...g...... Af081105 .a........ .......... ..ca...... .......... ...g...... Tfnode2 .a........ .......... ..ca...... .......... ...g...... [ 5450 ' ' ' ' ] L1mdA2 GCAAAAAGTC TTCTCAAGGA TAAAAGAACT TCTGGCGGAA TCACCATGCC Tfnode1 .......c.. .......... .........c .....t.... .......... Ac3063a ---------- ---------- ---------- ---------- ---------- Ac5403c ---------- ---------- ---------- ---------- ---------- Af136179a ---------- ---------- ---------- ---------- ---------- Musrsl1r ---------- ---------- ---------- ---------- ---------- Ac5403lr .......c.. .......... .........c .....t.... .......... Ac5938a .......c.. .......... .........c .....t.... .......... Dam ---------- ---------- ---------- ---------- ---------- Das ---------- ---------- ---------- ---------- ---------- Dao ---------- ---------- ---------- ---------- ---------- Ac3949lr ---------- ---------- ---------- ---------- ---------- Af081114 .......c.. .......... .........c .....t.... .......... Af081108 .......c.. .......... .........c .....t..t. .......... Af081110 .......... .......... .........c .....t.... .......... Af081104 .......c.. .......... .........c .....t.... .......... Af081105 .......c.. .......... .........c .....t.... .......... Tfnode2 .......c.. .......... .........c .....t.... .......... [ 5500 ' ' ' ' ] L1mdA2 AGACCTAAAG CTTTACTACA GAGCAATTGT GATAAAAACT GCATGGTACT Tfnode1 t......... .......... .......... .......... .......... Ac3063a ---------- ---------- ---------- ---------- ---------- Ac5403c ---------- ---------- ---------- ---------- ---------- Af136179a ---------- ---------- ---------- ---------- ---------- Musrsl1r ---------- ---------- ---------- ---------- ---------- Ac5403lr t......... .......... .......... .......... .......... Ac5938a t......... .......... .......... .......... .......... Dam ---------- ---------- ---------- ---------- ---------- Das ---------- ---------- ---------- ---------- ---------- Dao ---------- ---------- ---------- ---------- ---------- Ac3949lr ---------- ---------- ---------- ---------- ---------- Af081114 t......... .......... .......... .......... .......... Af081108 t......... .......... .......... .......... .......... Af081110 t......... .......... .......... .......... .......... Af081104 t......... .......... .......... .......... .......... Af081105 t......... .......... .......... .......... .......... Tfnode2 t......... .......... .......... .......... .......... [ 5550 ' ' ' ' ] L1mdA2 GGTATAGAGA CAGACAAGTA GACCAATGGA ATAGAATTGA AGATCCAGAA Tfnode1 .......... .........g .......... .......... ...c...... Ac3063a ---------- ---------- ---------- ---------- ---------- Ac5403c ---------- ---------- ---------- ---------- ---------- Af136179a ---------- ---------- ---------- ---------- ---------- Musrsl1r ---------- ---------- ---------- ---------- ---------- Ac5403lr .......... .........g .......... .......... ...c...... Ac5938a .......... .........g .......... .......... ...c...... Dam ---------- ---------- ---------- ---------- ---------- Das ---------- ---------- ---------- ---------- ---------- Dao ---------- ---------- ---------- ---------- ---------- Ac3949lr ---------- ---------- ---------- ---------- ---------- Af081114 .......... .........g .......... .......... ...c...... Af081108 .......... .........g .......... .......... ...c...... Af081110 .......... .........g .......... .....t.... ...c...... Af081104 .......... .........g .......... .......... ...c...... Af081105 .......... .........g .......... .......... ...c...... Tfnode2 .......... .........g .......... .......... ...c...... [ 5600 ' ' ' ' ] L1mdA2 ATGAACCCAC ACACCTATGG TCACTTGATC TTCGACAAGG GAGCTAAAAC Tfnode1 .......... .......... .......... .......... ....c..... Ac3063a ---------- ---------- ---------- ---------- ---------- Ac5403c ---------- ---------- ---------- ---------- ---------- Af136179a ---------- ---------- ---------- ---------- ---------- Musrsl1r ---------- ---------- ---------- ---------- ---------- Ac5403lr .......... .......... .......... .......... ....c..... Ac5938a .......... .......... .......... .......... ....c..... Dam ---------- ---------- ---------- ---------- ---------- Das ---------- ---------- ---------- ---------- ---------- Dao ---------- ---------- ---------- ---------- ---------- Ac3949lr ---------- ---------- ---------- ---------- ---------- Af081114 .......... .......... .......... .......... ....c..... Af081108 .......... .......... .......... ......c... ....c..... Af081110 .......... .......... .......... .......... ....c..... Af081104 .......... .......... .......... .......... ....c..... Af081105 .......... .......... .......... .......... ....c..... Tfnode2 .......... .......... .......... .......... ....c..... [ 5650 ' ' ' ' ] L1mdA2 CATCCAGTGG AAGAAAGACA GCATTTTCAA CAATTGGTGC TGGCACAACT Tfnode1 .......... .......... .......... .......... .......... Ac3063a ---------- ---------- ---------- ---------- ---------- Ac5403c ---------- ---------- ---------- ---------- ---------- Af136179a ---------- ---------- ---------- ---------- ---------- Musrsl1r ---------- ---------- ---------- ---------- ---------- Ac5403lr .......... .......... .......... .......... .......... Ac5938a .......... .......... .......... .......... .......... Dam ---------- ---------- ---------- ---------- ---------- Das ---------- ---------- ---------- ---------- ---------- Dao ---------- ---------- ---------- ---------- ---------- Ac3949lr ---------- ---------- ---------- ---------- ---------- Af081114 .......... .......... .......... .......... .......... Af081108 .......... .......... .......... .......... .......... Af081110 .......... .......... .......... .......... .......... Af081104 .......... .......... .......... .......... .......... Af081105 .......... .......... .......... .......... .......... Tfnode2 .......... .......... .......... .......... .......... [ 5700 ' ' ' ' ] L1mdA2 GGTTGTTATC GTGTAGAAGA ATGCGAATCG ATCCATACTT ATCTCCTTGT Tfnode1 .......... a......... .......... .......... .......... Ac3063a ---------- ---------- ---------- ---------- ---------- Ac5403c ---------- ---------- ---------- ---------- ---------- Af136179a ---------- ---------- ---------- ---------- ---------- Musrsl1r ---------- ---------- ---------- ---------- ---------- Ac5403lr .......... a......... .......... .......... .......... Ac5938a .......... a......... .......... .......... .......... Dam ---------- ---------- ---------- ---------- ---------- Das ---------- ---------- ---------- ---------- ---------- Dao ---------- ---------- ---------- ---------- ---------- Ac3949lr ---------- ---------- ---------- ---------- ---------- Af081114 .......... a......... .......... .......... .......... Af081108 .......... a......... .......... .......... .......... Af081110 .......... a......... .......... .......... .......... Af081104 .......... a......... .......... .......... .......... Af081105 .......... a......... .......... .......... .......... Tfnode2 .......... a......... .......... .......... .......... [ 5750 ' ' ' ' ] L1mdA2 ACTAAGGTCA AATCTAAGTG GATCAAGGAA CTTCACATAA AACCAGAGAC Tfnode1 .......... .......... .......... .......... .......... Ac3063a ---------- ---------- ---------- ---------- ---------- Ac5403c ---------- ---------- ---------- ---------- ---------- Af136179a ---------- ---------- ---------- ---------- ---------- Musrsl1r ---------- ---------- ---------- ---------- ---------- Ac5403lr .......... .......... .......... .......... .......... Ac5938a .......... .......... ...a...... .......... .......... Dam ---------- ---------- ---------- ---------- ---------- Das ---------- ---------- ---------- ---------- ---------- Dao ---------- ---------- ---------- ---------- ---------- Ac3949lr ---------- ---------- ---------- ---------- ---------- Af081114 .......... .......... .........t .......... .......... Af081108 .......... .......... .......... .......... .......... Af081110 .......... .......... .......... .......... .......... Af081104 .......... .......... .......... .......... .......... Af081105 .......... .......... .......... .......... .......... Tfnode2 .......... .......... .......... .......... .......... [ 5800 ' ' ' ' ] L1mdA2 ACTGAAACTT ATAGAGGAGA AAGTGGGGAA AAGCCTTGAA GATATGGGCA Tfnode1 .......... .......... .......... .......... .......... Ac3063a ---------- ---------- ---------- ---------- ---------- Ac5403c ---------- ---------- ---------- ---------- ---------- Af136179a ---------- ---------- ---------- ---------- ---------- Musrsl1r ---------- ---------- ---------- ---------- ---------- Ac5403lr .......... .......... .......... .......... .......... Ac5938a .......... .......... .......... .......... .......... Dam ---------- ---------- ---------- ---------- ---------- Das ---------- ---------- ---------- ---------- ---------- Dao ---------- ---------- ---------- ---------- ---------- Ac3949lr ---------- ---------- ---------- ---------- ---------- Af081114 .......... .......... .......... .......... .......... Af081108 .......... .......... .......... .......... .......... Af081110 .......... .......... .......... .......... .......... Af081104 .......... .......... .......... .......... .......... Af081105 .......... .......... .......... .......... .......... Tfnode2 .......... .......... .......... .......... .......... [ 5850 ' ' ' ' ] L1mdA2 CAGGGGAAAA ATTCCTGAAC AGAACAGCAA TGGCTTGTGC TGTAAGATCG Tfnode1 .......... .......... .......... .......... .......... Ac3063a ---------- ---------- ---------- ---------- ---------- Ac5403c ---------- ---------- ---------- ---------- ---------- Af136179a ---------- ---------- ---------- ---------- ---------- Musrsl1r ---------- ---------- ---------- ---------- ---------- Ac5403lr .......... .......... .......... .......... .......... Ac5938a .......... .......... .......... .......... .......... Dam ---------- ---------- ---------- ---------- ---------- Das ---------- ---------- ---------- ---------- ---------- Dao ---------- ---------- ---------- ---------- ---------- Ac3949lr ---------- ---------- ---------- ---------- ---------- Af081114 .......... .......... .......... .......... .......... Af081108 .......... .......... .......... .......... .......... Af081110 .......... .......... .......... .......... .......... Af081104 .......... .......... .......... .......... .......... Af081105 .......... .......... .......... .......... .......... Tfnode2 .......... .......... .......... .......... .......... [ 5900 ' ' ' ' ] L1mdA2 AGAATCGACA AATGGGACCT AATGAAACTG CAAAGTTTCT GCAAGGCAAA Tfnode1 .....t.... .......... .........c .......... .......... Ac3063a ---------- ---------- ---------- ---------- ---------- Ac5403c ---------- ---------- ---------- ---------- ---------- Af136179a ---------- ---------- ---------- ---------- ---------- Musrsl1r ---------- ---------- ---------- ---------- ---------- Ac5403lr .....t.... .......... .........c .......... .......... Ac5938a .....t.... .......... .........c .......... .......... Dam ---------- ---------- ---------- ---------- ---------- Das ---------- ---------- ---------- ---------- ---------- Dao ---------- ---------- ---------- ---------- ---------- Ac3949lr ---------- ---------- ---------- ---------- ---------- Af081114 .....t.... .......... .........c .......... .......... Af081108 .....t.... .......... .........c .......... .......... Af081110 .....t.... .......... .........c .......... .......... Af081104 .....t.... .......... .........c .......... .......... Af081105 .....t.... .......... .........c .......... .......... Tfnode2 .....t.... .......... .........c .......... .......... [ 5950 ' ' ' ' ] L1mdA2 AGACACTGTC AATAAGACAA AAAGACCACC AACAGATTGG GAAAGGATCT Tfnode1 .......... t......... .......... ......c... .......... Ac3063a ---------- ---------- ---------- ---------- ---------- Ac5403c ---------- ---------- ---------- ---------- ---------- Af136179a ---------- ---------- ---------- ---------- ---------- Musrsl1r ---------- ---------- ---------- ---------- ---------- Ac5403lr .......... t......... .......... ......c... .......... Ac5938a .......... t......... .......... ......c... .......... Dam ---------- ---------- ---------- ---------- ---------- Das ---------- ---------- ---------- ---------- ---------- Dao ---------- ---------- ---------- ---------- ---------- Ac3949lr ---------- ---------- ---------- ---------- ---------- Af081114 .......... t......... .......... ......c... .......... Af081108 .......... t......... .......... ......c... .......... Af081110 .......... t......... .......... ......c... .......... Af081104 .......... t......... .......... ......c... .......... Af081105 .......... t......... .......... ......c... .......... Tfnode2 .......... t......... .......... ......c... .......... [ 6000 ' ' ' ' ] L1mdA2 TTACCTATCC TAAATCAGAT AGGGGACTAA TATCCAACAT ATATAAAGAA Tfnode1 .......... .......... .......... .......... .......... Ac3063a ---------- ---------- ---------- ---------- ---------- Ac5403c ---------- ---------- ---------- ---------- ---------- Af136179a ---------- ---------- ---------- ---------- ---------- Musrsl1r ---------- ---------- ---------- ---------- ---------- Ac5403lr .......... .......... .......... .......... .......... Ac5938a .......... .......... .......... .......... .......... Dam ---------- ---------- ---------- ---------- ---------- Das ---------- ---------- ---------- ---------- ---------- Dao ---------- ---------- ---------- ---------- ---------- Ac3949lr ---------- ---------- ---------- ---------- ---------- Af081114 .......... .......... .......... .......... .......... Af081108 .......... .......... .......... .......... .......... Af081110 .......... .......... .......... .......... .......... Af081104 .......... .......... .......... .......... .......... Af081105 .......... .......... .......... .......... .......... Tfnode2 .......... .......... .......... .......... .......... [ 6050 ' ' ' ' ] L1mdA2 CTCAAGAAGG TGGACTTCAG AAAATCAAAT AACCCCATTA AAAAATGGGG Tfnode1 .......... .....c.... .......... ......c... .......... Ac3063a ---------- ---------- ---------- ---------- ---------- Ac5403c ---------- ---------- ---------- ---------- ---------- Af136179a ---------- ---------- ---------- ---------- ---------- Musrsl1r ---------- ---------- ---------- ---------- ---------- Ac5403lr .......... .....c.... .......... ......c... .......... Ac5938a .......... .....c.... .......... ......c... .......... Dam ---------- ---------- ---------- ---------- ---------- Das ---------- ---------- ---------- ---------- ---------- Dao ---------- ---------- ---------- ---------- ---------- Ac3949lr ---------- ---------- ---------- ---------- ---------- Af081114 .......... .....c.... .......... ......c... .......... Af081108 .......... .....c.... .......... ......c... .......... Af081110 .......... .....c.... .......... ......c... .......... Af081104 .......... .....c.... .......... ......c... .......... Af081105 .......... .....c.... .......... ......c... .......... Tfnode2 .......... .....c.... .......... ......c... .......... [ 6100 ' ' ' ' ] L1mdA2 CTCAGAACTG AACAAAGAAT TCTCACCCGA GGAATACCGA ATGGCAGAGA Tfnode1 .......... .......... .......t.. .......... .......... Ac3063a ---------- ---------- ---------- ---------- ---------- Ac5403c ---------- ---------- ---------- ---------- ---------- Af136179a ---------- ---------- ---------- ---------- ---------- Musrsl1r ---------- ---------- ---------- ---------- ---------- Ac5403lr .......... .......... .......t.. .......... .......... Ac5938a .......... .......... .......t.. .......... .......... Dam ---------- --------.. .......t.. .......... .......... Das ---------- --------.. .......t.. .......... .......... Dao ---------- --------.. .......t.. .......... .......... Ac3949lr ---------- ---------- ---------- ---------- --------.. Af081114 .......... .......... .......t.. .......... .......... Af081108 .......... .......... .......t.. .......... .......... Af081110 .......... .......... .......t.. .......... .......... Af081104 .......... .......... .......t.. .......... .......... Af081105 .......... .......... .......t.. .......... .......... Tfnode2 .......... .......... .......t.. .......... .......... [ 6150 ' ' ' ' ] L1mdA2 AGCACTTGAA AAAATGTTCA ACATCCTTAA TCATCAGGGA AATGCAAATC Tfnode1 .....c.... .......... .......... .......... .......... Ac3063a ---------- ---------- ---------- ---------- ---------- Ac5403c ---------- ---------- ---------- ---------- ---------- Af136179a ---------- ---------- ---------- ---------- ---------- Musrsl1r ---------- ---------- ---------- ---------- ---------- Ac5403lr .....c.... .......... .......... .......... .......... Ac5938a .....c.... .......... .......... .......... .......... Dam .....c.... .......... .......... .......... .......... Das .....c.... .......... .......... .......... .......... Dao .....c.... .......... .......... .......... .......... Ac3949lr .....c.... .......... .......... .......... .......... Af081114 .....c.... .......... .......... .......... .......... Af081108 .....c.... .......... .......... .......... .......... Af081110 .....c.... .......... .......... .......... .......... Af081104 .....c.... .......... .......... .......... .......... Af081105 .....c.... .......... .......... .......... .......... Tfnode2 .....c.... .......... .......... .......... .......... [ 6200 ' ' ' ' ] L1mdA2 AAAACAACCC TGAGATTCCA CCTCACACCA GTCAGAATGG CTAAGATCAA Tfnode1 .......... .......... .......... ..g....... .......... Ac3063a ---------- ---------- ---------- ---------- ---------- Ac5403c ---------- ---------- ---------- ---------- ---------- Af136179a ---------- ---------- ---------- ---------- ---------- Musrsl1r ---------- ---------- ---------- ---------- ---------- Ac5403lr .......... .......... .......... ..g....... .......... Ac5938a .......... .......... .......... ..g....... .......... Dam .......... .......... .......... ..g....... .......... Das .......... .......... .......... .......... .......... Dao .......... .......... .......... .......... .......... Ac3949lr .......... .......... .......... .......... .......... Af081114 .......... .......... .......... .......... .......... Af081108 .......... .......... .......... ..g....... .......... Af081110 .......... .......... .......... ..g....... .......... Af081104 .......... .......... .......... ..g....... .......... Af081105 .......... .......... .......... ..g....... .......... Tfnode2 .......... .......... .......... ..g....... .......... [ 6250 ' ' ' ' ] L1mdA2 AAATTCAGGT GACAGCAGAT GCTGGCGAGG ATGTGGAGAA AGAGGAACAC Tfnode1 .......... .......... .......... .......... .......... Ac3063a ---------- ---------- ---------- ---------- ---------- Ac5403c ---------- ---------- ---------- ---------- ---------- Af136179a ---------- ---------- ---------- ---------- ---------- Musrsl1r ---------- ---------- ---------- ---------- ---------- Ac5403lr .......... .......... .......... .......... .......... Ac5938a .......... .......... .......... .......... .......... Dam .......... .......... .......... .......... .......... Das .......... .......... .......... .......... .......... Dao .......... .......... .......... .......... .......... Ac3949lr .......... .......... .......... .......... .......... Af081114 .......... .......... .......... .......... .......... Af081108 .......... .......... .......... .......... .......... Af081110 .......... .......... .......... .......... .......... Af081104 .......... .......... .......... .......... .......... Af081105 .......... .......... .......... .......... .......... Tfnode2 .......... .......... .......... .......... .......... [ 6300 ' ' ' ' ] L1mdA2 TCCTCCATTG TTGGTGGGAG TGCAGGCTTG TACAACCACT CTGGAAATCA Tfnode1 .......... .........t .......... .......... .......... Ac3063a ---------- ---------- ---------- ---------- ---------- Ac5403c ---------- ---------- ---------- ---------- ---------- Af136179a ---------- ---------- ---------- ---------- ---------- Musrsl1r ---------- ---------- ---------- ---------- ---------- Ac5403lr .......... .........t .......... .......... .......... Ac5938a .......... .........t .......... .......... .......... Dam .......... .........t .......... .......... .......... Das .......... .........t .......... .......... .......... Dao .......... .........t .......... .......... .......... Ac3949lr .......... .........t .......... .......... .......... Af081114 .......... .........t .......... .......... .......... Af081108 .......... .........t .......... .......... .......... Af081110 .......... .........t .......... .......... .......... Af081104 .......... .........t .......... .......... .......... Af081105 .......... .........t .......... .......... .......... Tfnode2 .......... .........t .......... .......... .......... [ 6350 ' ' ' ' ] L1mdA2 GTCTGGCGGT TCCTCAGAAA ACTGGACATA GTACTACCGG AGGATCCAGC Tfnode1 .......... .......... .t........ .......... .......... Ac3063a ---------- ---------- ---------- ---------- ---------- Ac5403c ---------- ---------- ---------- ---------- ---------- Af136179a ---------- ---------- ---------- ---------- ---------- Musrsl1r ---------- ---------- ---------- ---------- ---------- Ac5403lr .....t.... .......... .t........ .......... .......... Ac5938a .......... .......... .t........ .......... .......... Dam .......... .......... .t........ .......... .......... Das .......... .......... .t........ .......... .......... Dao .......... .......... .t........ .......... .......... Ac3949lr .......... .......... .t........ ........a. .......... Af081114 .......... .......... .t........ .......... .......... Af081108 .......... .......... .t........ .......... .......... Af081110 .......... .......... .t........ .......... .......... Af081104 .......... .......... .t........ .......... .......... Af081105 .......... .......... .t........ .......... .......... Tfnode2 .......... .......... .t........ .......... .......... [ 6400 ' ' ' ' ] L1mdA2 AATACCTCTC CTGGGCATAT ATCCAGAAGA TGCCCCAACA GGTAAGAAGG Tfnode1 .......... .......... .......... a........t .......... Ac3063a ---------- ---------- ---------- ---------- ---------- Ac5403c ---------- ---------- ---------- ---------- ---------- Af136179a ---------- ---------- ---------- ---------- ---------- Musrsl1r ---------- ---------- ---------- ---------- ---------- Ac5403lr .......... .......... .......... a........t .......... Ac5938a .......... .......... .......... a........t .......... Dam .......... .......... .......... a........t .......... Das .......... .......... .......... a........t .......... Dao .......... .......... .......... a........t .......... Ac3949lr .......... .......... .......... a........t .......... Af081114 .......... .......... .......... a........t .......... Af081108 .......... .......... .......... a........t .......... Af081110 .......... .......... .......... a........t .......... Af081104 .......... .......... .......... a........t .......... Af081105 .......... .......... .......... a........t .......... Tfnode2 .......... .......... .......... a........t .......... [ 6450 ' ' ' ' ] L1mdA2 ACACATGCTC CACTATGTTC ATAGCAGCCT TATTTATAAT AGCCAGAAGC Tfnode1 .......... .......... .......... .......... ........a. Ac3063a ---------- ---------- ---------- ---------- ---------- Ac5403c ---------- ---------- ---------- ---------- ---------- Af136179a ---------- ---------- ---------- ---------- ---------- Musrsl1r ---------- ---------- ---------- ---------- ---------- Ac5403lr .......... .......... .......... .......... ........a. Ac5938a .......... .......... .......... .......... ........a.