#NEXUS [!Imported GCG-MSF file "c:\tf\tf2.nxx" (Wed Sep 29 10:52:01 1999)] [ Tf2.Msf MSF: 5883 Type: N September 29, 1999 10:04 Check: 196 .. ] Begin data; Dimensions ntax=26 nchar=5883; Format datatype=DNA interleave gap=- matchchar=.; Matrix [ ' 1550 ' ' ' ] L1mdA2 ACTTCTGCCA GGAGTCTGGT TCGAACACCA GATATCTGGG TACCTGCCTT Dat ---------- ---------- ---------- ---------- ---------- Af081112 t....g.... ....-ga... c.a..t..a. ........c. c....t..c. Af081107 t....g.... ....-ga..c c.a..t..a. ........c. c....t..c. Ac5938b t....g.... ....-ga... c.a..t..a. ........c. c....t..c. Tfnode2 t....g.... ....-ga... c.a..t..a. ........c. c....t..c. Ac4405lr ---------- ---------- ---------- ---------- ---------- Af081113 t....g.... ....-ga... c.a..t..a. ........c. c....t..c. Af081106 t....g.... ....-ga... c.a..t..a. ........c. c....t..c. D2 ---------- ---------- ---------- ---------- ---------- D3 ---------- ---------- ---------- ---------- ---------- L1md4 ---------- ---------- ---------- ---------- ---------- Dab ---------- ---------- ---------- ---------- ---------- Dar ---------- ---------- ---------- ---------- ---------- Daq ---------- ---------- ---------- ---------- ---------- Dap ---------- ---------- ---------- ---------- ---------- Daa ---------- ---------- ---------- ---------- ---------- Dae ---------- ---------- ---------- ---------- ---------- Dan ---------- ---------- ---------- ---------- ---------- L1orl t....g.... ....-ga... c.a..t..a. ........c. c....t..c. Musmht ---------- ---------- ---------- ---------- ---------- Dad ---------- ---------- ---------- ---------- ---------- Af081111 t....g.... ....-ga... c.a..t..a. ........c. c....t..c. Af081109 t....g.... ....-ga... c.a..t..a. ........c. c....t..c. L1spa t....gt... ....-ga... c.a..t..a. ........c. c....t..c. Tfnode1 t....g.... ....-ga... c.a..t..a. ........c. c....t..c. [ ' 1600 ' ' ' ] L1mdA2 GCAAGAAGAG AGCTTGCCTG CAGAGAATAC TCTGCCCACT GAAACT-A-A Dat ---------- ---------- ---------- ---------- ---------- Af081112 .t....---. ........a. ......g.g. ....ag.... ......c.g. Af081107 .t....---. ........a. ......g.g. ....ag.... ......c.g. Ac5938b .t....---. ........a. ......g.g. ....ag.... ......c.g. Tfnode2 .t....---. ........a. ......g.g. ....ag.... ......c.g. Ac4405lr ---------- ---------- ---------- ---------- ---------- Af081113 .t....---. ........a. ......g.g. ....ag.... ......c.g. Af081106 .t....---. ........a. ......g.g. ....ag.... ......c.g. D2 ---------- ---------- ---------- ---------- ---------- D3 ---------- ---------- ---------- ---------- ---------- L1md4 ---------- ---------- ---------- ---------- ---------- Dab ---------- ---------- ---------- ---------- ---------- Dar ---------- ---------- ---------- ---------- ---------- Daq ---------- ---------- ---------- ---------- ---------- Dap ---------- ---------- ---------- ---------- ---------- Daa ---------- ---------- ---------- ---------- ---------- Dae ---------- ---------- ---------- ---------- ---------- Dan ---------- ---------- ---------- ---------- ---------- L1orl .t....---. ........a. ......g.g. ....ag.... ......c.g. Musmht ---------- ---------- ---------- ---------- ---------- Dad ---------- ---------- ---------- ---------- ---------- Af081111 .t....---. ........a. ......g.g. ....ag.... ......c.g. Af081109 .t....---. ........a. ......g.g. ....ag.... ......c.g. L1spa .t....---. ........a. ......g.g. ....ag.... ......c.g. Tfnode1 .t....---. ........a. ......g.g. ....ag.... ......c.g. [ ' 1650 ' ' ' ] L1mdA2 GGAGAGTGCT ACCCTCC-AG GTCTGCTCAT AGAGGCTAAC AGAGTCACCT Dat ---------- ---------- ---------- ---------- ---------- Af081112 ......aatc tgt....c.. .......g.. ...c.g.... ...a.....a Af081107 ......aatc tgt....c.. .......g.. ...c.g.... ...a.....a Ac5938b ......aatc tgt....c.. .......g.. ...c.g.... ...a.....a Tfnode2 ......aatc tgt....c.. .......g.. ...c.g.... ...a.....a Ac4405lr ---------- ---------- ---------- ---------- ---------- Af081113 ......aatc tgt....c.. .......g.. ...c.g.... ...a.....a Af081106 ......aatc tgt....c.. .......g.. ...c.g.... ...a.....a D2 ---------- ---------- ---------- ---------- ---------- D3 ---------- ---------- ---------- ---------- ---------- L1md4 ---------- ---------- ---------- ---------- ---------- Dab ---------- ---------- ---------- ---------- ---------- Dar ---------- ---------- ---------- ---------- ---------- Daq ---------- ---------- ---------- ---------- ---------- Dap ---------- ---------- ---------- ---------- ---------- Daa ---------- ---------- ---------- ---------- ---------- Dae ---------- ---------- ---------- ---------- ---------- Dan ---------- ---------- ---------- ---------- ---------- L1orl ......aatc tgt....c.. .......g.. ...c.g.... ...a.....a Musmht ---------- ---------- ---------- ---------- ---------- Dad ---------- ---------- ---------- ---------- ---------- Af081111 ......aatc tgt....c.. .......g.. ...c.g.... ...a.....a Af081109 ......aatc tgt....c.. .......g.. ...c.g.... ...a.....a L1spa ......aatc tgt....c.. .......g.. ...c.g.... ...a.....a Tfnode1 ......aatc tgt....c.. .......g.. ...c.g.... ...a.....a [ ' 1700 ' ' ' ] L1mdA2 GAAGAACAAG CTCTTAACAG TGACAACTAA AAC-AGCTAG CTTCAGAGAT Dat ---------- ---------- ---------- ---------- ---------- Af081112 .........t ....a..... a.t......t ...-ta...a ..c....... Af081107 .........t ....a..... a.t......t ...-ta...a ..c....... Ac5938b .........t ....a..... a.t......t ...-ta...a ..c....... Tfnode2 .........t ....a..... a.t......t ...-ta...a ..c....... Ac4405lr ---------- ---------- ---------- ---------- ---------- Af081113 .........t ....a..... a.t......t ...-ta...a ..c....... Af081106 .........t ....a..... a.t......t ...-ta...a ..c....... D2 ---------- ---------- ---------- ---------- ---------- D3 ---------- ---------- ---------- ---------- ---------- L1md4 ---------- ---------- ---------- ---------- ---------- Dab ---------- ---------- ---------- ---------- ---------- Dar ---------- ---------- ---------- ---------- ---------- Daq ---------- ---------- ---------- ---------- ---------- Dap ---------- ---------- ---------- ---------- ---------- Daa ---------- ---------- ---------- ---------- ---------- Dae ---------- ---------- ---------- ---------- ---------- Dan ---------- ---------- ---------- ---------- ---------- L1orl .........t ....a..... a.t......t ...-ta...a ..c....... Musmht ---------- ---------- ---------- ---------- ---------- Dad ---------- ---------- ---------- ---------- ---------- Af081111 .........t ....a..... a.t......t ...-ta...a ..c....... Af081109 .........t ....a..... a.t......t ...tta...a ..c....... L1spa .........t ....a..... a.t......t ...-ta...a ..c....... Tfnode1 .........t ....a..... a.t......t ...-ta...a ..c....... [ ' 1750 ' ' ' ] L1mdA2 TACCAGATGG CGAAAGGCAA ACGTAAGAAT CCTACTAACA GAAATCAAGA Dat ---------- ---------- ---------- ---------- ---------- Af081112 .......... .......t.. ..tg.g.... .t........ .g..c..... Af081107 .......... .......t.. ...g.g.... .t........ .g..c..... Ac5938b .......... .......t.. ...g.g.... .t........ .g..c..... Tfnode2 .......... .......t.. ...g.g.... .t........ .g..c..... Ac4405lr ---------- ---------- ---------- ---------- ---------- Af081113 .......... .......t.. ...g.g.... .t........ .g..c..... Af081106 .......... .......t.. ...g.g.... .t........ .g..c..... D2 ---------- ---------- ---------- ---------- ---------- D3 ---------- ---------- ---------- ---------- ---------- L1md4 ---------- ---------- ---------- ---------- ---------- Dab ---------- ---------- ---------- ---------- ---------- Dar ---------- ---------- ---------- ---------- ---------- Daq ---------- ---------- ---------- ---------- ---------- Dap ---------- ---------- ---------- ---------- ---------- Daa ---------- ---------- ---------- ---------- ---------- Dae ---------- ---------- ---------- ---------- ---------- Dan ---------- ---------- ---------- ---------- ---------- L1orl .......... .......t.. ...g.g.... .t........ .g..c..... Musmht ---------- ---------- ---------- ---------- ---------- Dad ---------- ---------- ---------- ---------- ---------- Af081111 .......... .......t.. ...g.g.... .t........ .g..c..... Af081109 .......... .......t.. ...g.g.... .t........ .g..c..... L1spa .......... .......t.. ...g.g.... .t........ .g..c..... Tfnode1 .......... .......t.. ...g.g.... .t........ .g..c..... [ ' 1800 ' ' ' ] L1mdA2 CCACTCACCA TCATCAGAAC GCAGCACTCC CACCCCACCT AGTCCTGGGC Dat ---------- ---------- ---------- ---------- ---------- Af081112 .......... ...c...... c......a.. ...tt.g..c .....a...a Af081107 .......... ...c...... c......a.. ...tt.g..c .....a...a Ac5938b .......... ...c...... c......a.. ...tt.g..c .....a...a Tfnode2 .......... ...c...... c......a.. ...tt.g..c .....a...a Ac4405lr ---------- ---------- ---------- ---------- ---------- Af081113 .......... ...c...... c......a.. ...tt.g..c .....a...a Af081106 .......... ...c...... c......a.. ...tt.g..c .....a...a D2 ---------- ---------- ---------- ---------- ---------- D3 ---------- ---------- ---------- ---------- ---------- L1md4 ---------- ---------- ---------- ---------- ---------- Dab ---------- ---------- ---------- ---------- ---------- Dar ---------- ---------- ---------- ---------- ---------- Daq ---------- ---------- ---------- ---------- ---------- Dap ---------- ---------- ---------- ---------- ---------- Daa ---------- ---------- ---------- ---------- ---------- Dae ---------- ---------- ---------- ---------- ---------- Dan ---------- ---------- ---------- ---------- ---------- L1orl .......... ...c...... c......a.. ...tt.g..c .....a...a Musmht ---------- ---------- ---------- ---------- ---------- Dad ---------- ---------- ---------- ---------- ---------- Af081111 .......... ...c...... c......a.. ...tt.g..c .....a...a Af081109 .......... ...c...... c......a.. ...tt.g..c .....a...a L1spa .......... ...c...... c......a.. ...tt.g..c .....a...a Tfnode1 .......... ...c...... c......a.. ...tt.g..c .....a...a [ ' 1850 ' ' ' ] L1mdA2 ACCCCAACAC AACCGAAAAT CTAGACCCAG ATTTAAAAAC ATTTCTCATG Dat ---------- ---------- ---------- ---------- ---------- Af081112 .......... .c.t..g..c .......t.. ........g. ..a....... Af081107 .......... .c.t..g..c .......t.. ........g. ..a....... Ac5938b .......... .c.t..g..c .......t.. ........g. ..a....... Tfnode2 .......... .c.t..g..c .......t.. ........g. ..a....... Ac4405lr ---------- ---------- ---------- ---------- ---------- Af081113 .......... .c.t..g..c .......t.. ........g. ..a....... Af081106 .......... .c.t..g..c .......t.. ........g. ..a....... D2 ---------- ---------- ---------- ---------- ---------- D3 ---------- ---------- ---------- ---------- ---------- L1md4 ---------- ---------- ---------- ---------- ---------- Dab ---------- ---------- ---------- ---------- ---------- Dar ---------- ---------- ---------- ---------- ---------- Daq ---------- ---------- ---------- ---------- ---------- Dap ---------- ---------- ---------- ---------- ---------- Daa ---------- ---------- ---------- ---------- ---------- Dae ---------- ---------- ---------- ---------- ---------- Dan ---------- ---------- ---------- ---------- ---------- L1orl .......... .c.t..g..c .......t.. ........g. ..a....... Musmht ---------- ---------- ---------- ---------- ---------- Dad ---------- ---------- ---------- ---------- ---------- Af081111 .......... .c.t..g..c .......t.. ........g. ..a....... Af081109 .......... .c.t..g..c .......t.. ........g. ..a....... L1spa .......... .c.t..g..c .......t.. ........g. ..a....... Tfnode1 .......... .c.t..g..c .......t.. ........g. ..a....... [ ' 1900 ' ' ' ] L1mdA2 ATGATGATAG AGGACATCAA GAAGGACTTT CATAAGTCAC TTAAAGATTT Dat ---------- ---------- ---------- ---------- ---------- Af081112 ......g... .......... .......... a....a.... .......aa. Af081107 ......g... .......... .......... a....a.... .......aa. Ac5938b ......g... .......... .......... a....a.... .......aa. Tfnode2 ......g... .......... .......... a....a.... .......aa. Ac4405lr ---------- ---------- ---------- ---------- ---------- Af081113 ......g... .......... .......... a....a.... .......aa. Af081106 ......g... .......... .......... a....a.... .......aa. D2 ---------- ---------- ---------- ---------- ---------- D3 ---------- ---------- ---------- ---------- ---------- L1md4 ---------- ---------- ---------- ---------- ---------- Dab ---------- ---------- ---------- ---------- ---------- Dar ---------- ---------- ---------- ---------- ---------- Daq ---------- ---------- ---------- ---------- ---------- Dap ---------- ---------- ---------- ---------- ---------- Daa ---------- ---------- ---------- ---------- ---------- Dae ---------- ---------- ---------- ---------- ---------- Dan ---------- ---------- ---------- ---------- ---------- L1orl ......g... .......... .......... a....a.... .......aa. Musmht ---------- ---------- ---------- ---------- ---------- Dad ---------- ---------- ---------- ---------- ---------- Af081111 ......g... .......t.. .......... a....a.... .......aa. Af081109 ......g... .......... .......... a....a.... .......aa. L1spa ......g... ...g...... .......... a....a.... .......aa. Tfnode1 ......g... .......... .......... a....a.... .......aa. [ ' 1950 ' ' ' ] L1mdA2 ACAGGAGAGC ACTGCTAAAG AGTTACAGGC TCTTAAAGAA AAGCAGGAAA Dat ---------- ---------- ---------- ---------- ---------- Af081112 ........a. .......... .......a.t c......... ..a....... Af081107 ........a. .......... .......a.t c......... ..a....... Ac5938b ........a. .......... .......a.t c......... ..a....... Tfnode2 ........a. .......... .......a.t c......... ..a....... Ac4405lr ---------- ---------- ---------- ---------- ---------- Af081113 ........a. .......... .......a.t c......... ..a....... Af081106 ........a. .......... .a.....a.t c......... ..a....... D2 ---------- ---------- ---------- ---------- ---------- D3 ---------- ---------- ---------- ---------- ---------- L1md4 ---------- ---------- ---------- ---------- ---------- Dab ---------- ---------- ---------- ---------- ---------- Dar ---------- ---------- ---------- ---------- ---------- Daq ---------- ---------- ---------- ---------- ---------- Dap ---------- ---------- ---------- ---------- ---------- Daa ---------- ---------- ---------- ---------- ---------- Dae ---------- ---------- ---------- ---------- ---------- Dan ---------- ---------- ---------- ---------- ---------- L1orl ........a. .......... .......a.t c......... ..a....... Musmht ---------- ---------- ---------- ---------- ---------- Dad ---------- ---------- ---------- ---------- ---------- Af081111 ........a. .......... .......a.t c......... ..a....... Af081109 ........a. .......... .......a.t c......... ..a....... L1spa ........a. .......... .......a.t c......... ..a....... Tfnode1 ........a. .......... .......a.t c......... ..a....... [ ' 2000 ] L1mdA2 ACACAGCCAA ACAGGT---- ---------- ---------- ---------- Dat ---------- ---------- ---------- ---------- ---------- Af081112 .....at... ......agaa gtccttacag aaaaagagga aaaaacatac Af081107 .....at... ......agaa gtccttacag aaaaagagga aaaaacatac Ac5938b .....at... ......agaa gtccttacag aaaaagagga aaaaacatac Tfnode2 .....at... ......agaa gtccttacag aaaaagagga aaaaacatac Ac4405lr ---------- ---------- ---------- ---------- ---------- Af081113 .....at... ......agaa gtccttacag aaaaagagga aaaaacatac Af081106 .....at... ......agaa gtccttacag aaaaagagga aaaaacatac D2 ---------- ---------- ---------- ---------- ---------- D3 ---------- ---------- ---------- ---------- ---------- L1md4 ---------- ---------- ---------- ---------- ---------- Dab ---------- ---------- ---------- ---------- ---------- Dar ---------- ---------- ---------- ---------- ---------- Daq ---------- ---------- ---------- ---------- ---------- Dap ---------- ---------- ---------- ---------- ---------- Daa ---------- ---------- ---------- ---------- ---------- Dae ---------- ---------- ---------- ---------- ---------- Dan ---------- ---------- ---------- ---------- ---------- L1orl .....at... ......agaa gtccttacag aaaaagagga aaaaacatac Musmht ---------- ---------- ---------- ---------- ---------- Dad ---------- ---------- ---------- ---------- ---------- Af081111 .....at... ......agaa gtccttacag aaaaagagga aaaaacatac Af081109 .....at... ......agaa gtccttacag aaaaagagga aaaaacatac L1spa .....at... ......agaa gtccttacag aaaaagagga aaaaacatac Tfnode1 .....at... ......agaa gtccttacag aaaaagagga aaaaacatac [ ' ' ' ' ] L1mdA2 --------GA TGGAAATGAA CAAAACCATA CTAGAACTAA AAGGGGAAGT Dat ---------- ---------- ---------- ---------- ---------- Af081112 aaacaggt.. .......... .......... .....c.... ..a....... Af081107 aaacaggt.. .......... .......... .....c.... ..a....... Ac5938b aaacaggt.. .......... .......... .....c.... ..a....... Tfnode2 aaacaggt.. .......... .......... .....c.... ..a....... Ac4405lr ---------- ---------- ---------- ---------- ---------- Af081113 aaacaggt.. .......... .......... .....c.... ..a....... Af081106 aaacaggt.. .......... .......... .....c.... ..a....... D2 ---------- ---------- ---------- ---------- ---------- D3 ---------- ---------- ---------- ---------- ---------- L1md4 ---------- ---------- ---------- ---------- ---------- Dab ---------- ---------- ---------- ---------- ---------- Dar ---------- ---------- ---------- ---------- ---------- Daq ---------- ---------- ---------- ---------- ---------- Dap ---------- ---------- ---------- ---------- ---------- Daa ---------- ---------- ---------- ---------- ---------- Dae ---------- ---------- ---------- ---------- ---------- Dan ---------- ---------- ---------- ---------- ---------- L1orl aaacaggt.. .......... .......... .....c.... ..a....... Musmht ---------- ---------- ---------- ---------- ---------- Dad ---------- ---------- ---------- ---------- ---------- Af081111 aaacaggt.. .......... .......... .....c.... ..a....... Af081109 aaacaggt.. .......... .......... .....c.... ..a....... L1spa aaacaggt.. .......... .......... .....c.... ..a....... Tfnode1 aaacaggt.. .......... .......... .....c.... ..a....... [ 2050 ' ' ' ' ] L1mdA2 AGACACAATA AAGAAAACCC AAAGCGAGGC AACGCTGGAG ATAGAAACCC Dat ---------- ---------- ---------- ---------- ---------- Af081112 .......... ........t. .......... ...a..a... .......... Af081107 .......... ........t. .......... ...a...... .......... Ac5938b .......... ........t. .......... ...a..a... .......... Tfnode2 .......... ........t. .......... ...a..a... .......... Ac4405lr ---------- ---------- ---------- ---------- ---------- Af081113 .......... ........t. .......... ...a..a... .......... Af081106 .......... ........t. .......... ...a..a... .......... D2 ---------- ---------- ---------- ---------- ---------- D3 ---------- ---------- ---------- ---------- ---------- L1md4 ---------- ---------- ---------- ---------- ---------- Dab ---------- ---------- ---------- ---------- ---------- Dar ---------- ---------- ---------- ---------- ---------- Daq ---------- ---------- ---------- ---------- ---------- Dap ---------- ---------- ---------- ---------- ---------- Daa ---------- ---------- ---------- ---------- ---------- Dae ---------- ---------- ---------- ---------- ---------- Dan ---------- ---------- ---------- ---------- ---------- L1orl .......... ........t. .......... ...a..a... .......... Musmht ---------- ---------- ---------- ---------- ---------- Dad ---------- ---------- ---------- ---------- ---------- Af081111 .......... ........t. .......... ...a..a... .......... Af081109 .......... ........t. .......... ...a..a... .......... L1spa .......... ........t. .......... ...a..a... .......... Tfnode1 .......... ........t. .......... ...a..a... .......... [ 2100 ' ' ' ' ] L1mdA2 TAGGAAAGAG ATCTGGAACC ATAGATGCGA GCATCAGCAA CAGAATACAA Dat ---------- ---------- ---------- ---------- ---------- Af081112 .........a .......... ......tt.. .......... .......... Af081107 .........a .......... ......tt.. .......... .......... Ac5938b .........a .......... ......tt.. .......... .......... Tfnode2 .........a .......... ......tt.. .......... .......... Ac4405lr ---------- ---------- ---------- ---------- ---------- Af081113 .........a .......... ......tt.. .......... .......... Af081106 .........a .......... ......tt.. .......... .......... D2 ---------- ---------- ---------- ---------- ---------- D3 ---------- ---------- ---------- ---------- ---------- L1md4 ---------- ---------- ---------- ---------- ---------- Dab ---------- ---------- ---------- ---------- ---------- Dar ---------- ---------- ---------- ---------- ---------- Daq ---------- ---------- ---------- ---------- ---------- Dap ---------- ---------- ---------- ---------- ---------- Daa ---------- ---------- ---------- ---------- ---------- Dae ---------- ---------- ---------- ---------- ---------- Dan ---------- ---------- ---------- ---------- ---------- L1orl .........a .......... ......tt.. .......... .......... Musmht ---------- ---------- ---------- ---------- ---------- Dad ---------- ---------- ---------- ---------- ---------- Af081111 .........a .......... ......tt.. .......... .......... Af081109 .........a .......... ......tt.. .......... .......... L1spa .........a .......... ......tt.. .......... .......... Tfnode1 .........a .......... ......tt.. .......... .......... [ 2150 ' ' ' ' ] L1mdA2 GAAATGGAAG AGAGAATCTC AGGTGCAGAA GATTCCATAG AGAACATCGA Dat ---------- ---------- ---------- ---------- ---------- Af081112 ..g....... .......... .......... .......... .........g Af081107 ..g....... .......... .......... .......... .........g Ac5938b ..g....... .......... .......... .......... .........g Tfnode2 ..g....... .......... .......... .......... .........g Ac4405lr ---------- ---------- ---------- ---------- ---------- Af081113 ..g....... .......... .......... .......... .........g Af081106 ..g....... .......... .......... .......... .........g D2 ---------- ---------- ---------- ---------- ---------- D3 ---------- ---------- ---------- ---------- ---------- L1md4 ---------- ---------- ---------- ---------- ---------- Dab ---------- ---------- ---------- ---------- ---------- Dar ---------- ---------- ---------- ---------- ---------- Daq ---------- ---------- ---------- ---------- ---------- Dap ---------- ---------- ---------- ---------- ---------- Daa ---------- ---------- ---------- ---------- ---------- Dae ---------- ---------- ---------- ---------- ---------- Dan ---------- ---------- ---------- ---------- ---------- L1orl ..g....... .......... .......... .......... .........g Musmht ---------- ---------- ---------- ---------- ---------- Dad ---------- ---------- ---------- ---------- ---------- Af081111 ..g....... .......... .......... .......... .........g Af081109 ..g....... .......... .......... .......... .........g L1spa ..g....... .......... .......... c......... .........g Tfnode1 ..g....... .......... .......... .......... .........g [ 2200 ' ' ' ' ] L1mdA2 CACAACAGTC AAAGAAAATA CAAAATGCAA AAGGATCCTA ACTCAAAACA Dat ---------- ---------- ---------- ---------- ---------- Af081112 .......a.. .........g g......... ..a....... ........t. Af081107 .......a.. .........g g......... ..a....... ........t. Ac5938b .......a.. .........g g......... ..a....... ........t. Tfnode2 .......a.. .........g g......... ..a....... ........t. Ac4405lr ---------- ---------- ---------- ---------- ---------- Af081113 .......a.. .........g g......... ..a....... ........t. Af081106 .......a.. .........g g......... ..a....... ........t. D2 ---------- ---------- ---------- ---------- ---------- D3 ---------- ---------- ---------- ---------- ---------- L1md4 ---------- ---------- ---------- ---------- ---------- Dab ---------- ---------- ---------- ---------- ---------- Dar ---------- ---------- ---------- ---------- ---------- Daq ---------- ---------- ---------- ---------- ---------- Dap ---------- ---------- ---------- ---------- ---------- Daa ---------- ---------- ---------- ---------- ---------- Dae ---------- ---------- ---------- ---------- ---------- Dan ---------- ---------- ---------- ---------- ---------- L1orl .......a.. .........g g......... ..a....... ........t. Musmht ---------- ---------- ---------- ---------- ---------- Dad ---------- ---------- ---------- ---------- ---------- Af081111 .......a.. .........g g......... ..a....... ........t. Af081109 .......a.. .........g g......... ..a....... ........t. L1spa .......a.. .........g g......... ..a....... ........t. Tfnode1 .......a.. .........g g......... ..a....... ........t. [ 2250 ' ' ' ' ] L1mdA2 TCCAGGTAAT CCAGGACACA ATGAGAAGAC CAAACCTACG GATAATAGGA Dat ---------- ---------- ---------- ---------- ---------- Af081112 ......a... .......... ..a....... .....g.... .......... Af081107 ......a... .......... ..a....... .....g.... .......... Ac5938b ......a... .......... ..a....... .....g.... .......... Tfnode2 ......a... .......... ..a....... .....g.... .......... Ac4405lr ---------- ---------- ---------- ---------- ---------- Af081113 ......a... .......... ..a....... .....a.... .......... Af081106 ......a... .......... ..a....... .....g.... .......... D2 ---------- ---------- ---------- ---------- ---------- D3 ---------- ---------- ---------- ---------- ---------- L1md4 ---------- ---------- ---------- ---------- ---------- Dab ---------- ---------- ---------- ---------- ---------- Dar ---------- ---------- ---------- ---------- ---------- Daq ---------- ---------- ---------- ---------- ---------- Dap ---------- ---------- ---------- ---------- ---------- Daa ---------- ---------- ---------- ---------- ---------- Dae ---------- ---------- ---------- ---------- ---------- Dan ---------- ---------- ---------- ---------- ---------- L1orl ......a... .......... ..a....... .....g.... .......... Musmht ---------- ---------- ---------- ---------- ---------- Dad ---------- ---------- ---------- ---------- ---------- Af081111 ......a... .......... ..a....... .....g.... .......... Af081109 ......a... .......... ..a....... .....g.... .......... L1spa ......a... .......... ..a....... .....g.... .......... Tfnode1 ......a... .......... ..a....... .....g.... .......... [ 2300 ' ' ' ' ] L1mdA2 ATTGATGAGA ATGAAGATTT TCAACTTAAA GGGCCAGCTA ATATCTTCAA Dat ---------- ---------- ---------- ---------- ---------- Af081112 g.g....... .......... ......c... ..t.....a. .c........ Af081107 g.g....... .......... ......c... ..t.....a. .c........ Ac5938b g.g....... .......... ......c... ..t.....a. .c........ Tfnode2 g.g....... .......... ......c... ..t.....a. .c........ Ac4405lr ---------- ---------- ---------- ---------- ---------- Af081113 g.g....... .......... ......c... ..t.....a. .c........ Af081106 g.g....... .......... ......c... ..t.....a. .c........ D2 ---------- ---------- ---------- ---------- ---------- D3 ---------- ---------- ---------- ---------- ---------- L1md4 ---------- ---------- ---------- ---------- ---------- Dab ---------- ---------- ---------- ---------- ---------- Dar ---------- ---------- ---------- ---------- ---------- Daq ---------- ---------- ---------- ---------- ---------- Dap ---------- ---------- ---------- ---------- ---------- Daa ---------- ---------- ---------- ---------- ---------- Dae ---------- ---------- ---------- ---------- ---------- Dan ---------- ---------- ---------- ---------- ---------- L1orl g.g....... .......... ......c... ..t.....a. .c........ Musmht ---------- ---------- ---------- ---------- ---------- Dad ---------- ---------- ---------- ---------- ---------- Af081111 g.g....... .......... ......c... ..t.....a. .c........ Af081109 g.g....... .......... ......c... ..t.....a. .c........ L1spa g.g....... .......... ......c... ..t.....a. .c........ Tfnode1 g.g....... .......... ......c... ..t.....a. .c........ [ 2350 ' ' ' ' ] L1mdA2 CAAAATAATA GAAGAAAACT TCCCAAACAT AAAAAAAGAG ATGCCCATGA Dat ---------- ---------- ---------- ---------- ---------- Af081112 ......t..t .......... .......tc. ...g..t... ....at.... Af081107 ......t..t .......... .......tc. ...g..t... ....at.... Ac5938b ......t..t .......... .......tc. ...g..t... ....at.... Tfnode2 ......t..t .......... .......tc. ...g..t... ....at.... Ac4405lr ---------- ---------- ---------- ---------- ---------- Af081113 ......t..t .......... .......tc. ...g..t... ....at.... Af081106 ......t..t .......... .......tc. ...g..t... ....at.... D2 ---------- ---------- ---------- ---------- ---------- D3 ---------- ---------- ---------- ---------- ---------- L1md4 ---------- ---------- ---------- ---------- ---------- Dab ---------- ---------- ---------- ---------- ---------- Dar ---------- ---------- ---------- ---------- ---------- Daq ---------- ---------- ---------- ---------- ---------- Dap ---------- ---------- ---------- ---------- ---------- Daa ---------- ---------- ---------- ---------- ---------- Dae ---------- ---------- ---------- ---------- ---------- Dan ---------- ---------- ---------- ---------- ---------- L1orl ......t..t .......... .......tc. ...g..t... ....at.... Musmht ---------- ---------- ---------- ---------- ---------- Dad ---------- ---------- ---------- ---------- ---------- Af081111 ......t..t .......... .......tc. ...g..t... ....at.... Af081109 ......t..t .......... .......tc. ...g..t... ....at.... L1spa ......t..t .......... .......tc. ...g..t... ....at.... Tfnode1 ......t..t .......... .......tc. ...g..t... ....at.... [ 2400 ' ' ' ' ] L1mdA2 TCATACAAGA AGCATACAGA ACTCCAAATA GACTGGACCA GAAAAGAAAT Dat ---------- ---------- ---------- ---------- ---------- Af081112 a......... ...c...... .......... .......... .......... Af081107 a......... ...c...... .......... .......... .......... Ac5938b a......... ...c...... .......... .......... .......... Tfnode2 a......... ...c...... .......... .......... .......... Ac4405lr ---------- ---------- ---------- ---------- ---------- Af081113 a......... ...c...... .......... .......... .......... Af081106 a......... ...c...... .......... .......... .......... D2 ---------- ---------- ---------- ---------- ---------- D3 ---------- ---------- ---------- ---------- ---------- L1md4 ---------- ---------- ---------- ---------- ---------- Dab ---------- ---------- ---------- ---------- ---------- Dar ---------- ---------- ---------- ---------- ---------- Daq ---------- ---------- ---------- ---------- ---------- Dap ---------- ---------- ---------- ---------- ---------- Daa ---------- ---------- ---------- ---------- ---------- Dae ---------- ---------- ---------- ---------- ---------- Dan ---------- ---------- ---------- ---------- ---------- L1orl a......... ...c...... .......... .......... .......... Musmht ---------- ---------- ---------- ---------- ---------- Dad ---------- ---------- ---------- ---------- ---------- Af081111 a......... ...c...... .......... .......... .......... Af081109 a......... ...c...... .......... .......... .......... L1spa a......... ...c...... .......... .......... .......... Tfnode1 a......... ...c...... .......... .......... .......... [ 2450 ' ' ' ' ] L1mdA2 TCCTCCCGAC ACATAATAAT CAGAACAACA AATGCACTAA ATAAAGATAG Dat ---------- ---------- ---------- ---------- ---------- Af081112 .......... .......... .......t.. .......... .......... Af081107 .......... .......... .......t.. .......... .......... Ac5938b .......... .......... .......t.. .......... .......... Tfnode2 .......... .......... .......t.. .......... .......... Ac4405lr ---------- ---------- ---------- ---------- ---------- Af081113 .......... .......... .......t.. .......c.. .......... Af081106 .......... .......... .......t.. .......... .......... D2 ---------- ---------- ---------- ---------- ---------- D3 ---------- ---------- ---------- ---------- ---------- L1md4 ---------- ---------- ---------- ---------- ---------- Dab ---------- ---------- ---------- ---------- ---------- Dar ---------- ---------- ---------- ---------- ---------- Daq ---------- ---------- ---------- ---------- ---------- Dap ---------- ---------- ---------- ---------- ---------- Daa ---------- ---------- ---------- ---------- ---------- Dae ---------- ---------- ---------- ---------- ---------- Dan ---------- ---------- ---------- ---------- ---------- L1orl .......... .......... .......t.. ......t... .......... Musmht ---------- ---------- ---------- ---------- ---------- Dad ---------- ---------- ---------- ---------- ---------- Af081111 .......... .......... .......t.. .......... .......... Af081109 .......... .......... .......t.. .......... .......... L1spa .......... .......... .......t.. .......... .......... Tfnode1 .......... .......... .......t.. .......... .......... [ 2500 ' ' ' ' ] L1mdA2 AATATTAAAA GCAGTAAGGG AGAAAGGTCA AGTAACATAT AAAGGAAGGC Dat ---------- ---------- ---------- ---------- ---------- Af081112 ....c..... .......... .a........ .......... .......a.. Af081107 ....c..... .......... .a........ .......... .....c.a.. Ac5938b ....c...g. .......... .a........ .......... .....c.a.. Tfnode2 ....c..... .......... .a........ .......... .....c.a.. Ac4405lr ---------- ---------- ---------- ---------- ---------- Af081113 ....c..... .......... .a........ .......... .....c.a.. Af081106 ....c..... .......... .a........ .......... .....c.a.. D2 ---------- ---------- ---------- ---------- ---------- D3 ---------- ---------- ---------- ---------- ---------- L1md4 ---------- ---------- ---------- ---------- ---------- Dab ---------- ---------- ---------- ---------- ---------- Dar ---------- ---------- ---------- ---------- ---------- Daq ---------- ---------- ---------- ---------- ---------- Dap ---------- ---------- ---------- ---------- ---------- Daa ---------- ---------- ---------- ---------- ---------- Dae ---------- ---------- ---------- ---------- ---------- Dan ---------- ---------- ---------- ---------- ---------- L1orl ....c..... .......... .a........ .......... .....c.a.. Musmht ---------- ---------- ---------- ---------- ---------- Dad ---------- ---------- ---------- ---------- ---------- Af081111 ....c..... .......... .a........ .......... .....c.a.. Af081109 ....c..... .......... .a........ .......... .....c.a.. L1spa ....c..... .......... .a........ .......... .....c.a.. Tfnode1 ....c..... .......... .a........ .......... .....c.a.. [ 2550 ' ' ' ' ] L1mdA2 CTATCAGAAT TACACCAGAC TTTTCACCAG AGACTATGAA AGCCAGAAGA Dat ---------- ---------- ---------- ---------- ---------- Af081112 .......... .........t .......... .......... .......... Af081107 .......... .........t .......... .......... .......... Ac5938b .......... .........t .......... .......... .......... Tfnode2 .......... .........t .......... .......... .......... Ac4405lr ---------- ---------- ---------- ---------- ---------- Af081113 .......... .........t .......... .......... .......... Af081106 .......... .........t c......... .......... .......... D2 ---------- ---------- ---------- ---------- ---------- D3 ---------- ---------- ---------- ---------- ---------- L1md4 ---------- ---------- ---------- ---------- ---------- Dab ---------- ---------- ---------- ---------- ---------- Dar ---------- ---------- ---------- ---------- ---------- Daq ---------- ---------- ---------- ---------- ---------- Dap ---------- ---------- ---------- ---------- ---------- Daa ---------- ---------- ---------- ---------- ---------- Dae ---------- ---------- ---------- ---------- ---------- Dan ---------- ---------- ---------- ---------- ---------- L1orl .......... .........t .......... .......... .......... Musmht ---------- ---------- ---------- ---------- ---------- Dad ---------- ---------- ---------- ---------- ---------- Af081111 .......... .........t .......... .......... .......... Af081109 .......... .........t .......... .......... .......... L1spa .......... .........t .......... .......... .......... Tfnode1 .......... .........t .......... .......... .......... [ 2600 ' ' ' ' ] L1mdA2 GCCTGGACAG ATGTTATACA GACACTAAGA GAACACAAAT GCCAGCCCAG Dat ---------- ---------- ---------- ---------- ---------- Af081112 .......... .......... .......... .........c tg........ Af081107 .......... .......... .......... .........c tg........ Ac5938b .......... .......... .......... .........c tg........ Tfnode2 .......... .......... .......... .........c tg........ Ac4405lr ---------- ---------- ---------- ---------- ---------- Af081113 .......... .......... .......... .........c tg........ Af081106 .......... .......... .......... .........c tg........ D2 ---------- ---------- ---------- ---------- ---------- D3 ---------- ---------- ---------- ---------- ---------- L1md4 ---------- ---------- ---------- ---------- ---------- Dab ---------- ---------- ---------- ---------- ---------- Dar ---------- ---------- ---------- ---------- ---------- Daq ---------- ---------- ---------- ---------- ---------- Dap ---------- ---------- ---------- ---------- ---------- Daa ---------- ---------- ---------- ---------- ---------- Dae ---------- ---------- ---------- ---------- ---------- Dan ---------- ---------- ---------- ---------- ---------- L1orl .......... .......... .......... .........c tg........ Musmht ---------- ---------- ---------- ---------- ---------- Dad ---------- ---------- ---------- ---------- ---------- Af081111 .......... .......... .......... .........c tg........ Af081109 .......... .......... .......... .........c tg........ L1spa .......... .......... .......... .........c tg........ Tfnode1 .......... .......... .......... .........c tg........ [ 2650 ' ' ' ' ] L1mdA2 GCTACTATAC CCGGCCAAAC TCTCAATTAC CATAGATGGA GAAACCAAAG Dat ---------- ---------- ---------- ---------- ---------- Af081112 .......... ..a....... .........t ......g... .......... Af081107 .......... ..a....... .........t ......g... .......... Ac5938b ......t... ..a....... .........t ......g... .......... Tfnode2 .......... ..a....... .........t ......g... .......... Ac4405lr ---------- ---------- ---------- ---------- ---------- Af081113 .......... ..a....... .........t ......g... .......... Af081106 .......... ..a....... .........t ......g... .......... D2 ---------- ---------- ---------- ---------- ---------- D3 ---------- ---------- ---------- ---------- ---------- L1md4 ---------- ---------- ---------- ---------- ---------- Dab ---------- ---------- ---------- ---------- ---------- Dar ---------- ---------- ---------- ---------- ---------- Daq ---------- ---------- ---------- ---------- ---------- Dap ---------- ---------- ---------- ---------- ---------- Daa ---------- ---------- ---------- ---------- ---------- Dae ---------- ---------- ---------- ---------- ---------- Dan ---------- ---------- ---------- ---------- ---------- L1orl .......... ..a....... .........t ......g... .......... Musmht ---------- ---------- ---------- ---------- ---------- Dad ---------- ---------- ---------- ---------- ---------- Af081111 .......... ..a....... .........t ......g... .......... Af081109 .......... ..a....... .........t ......g... .......... L1spa .......... ..a....... .........t ......g... .......... Tfnode1 .......... ..a....... .........t ......g... .......... [ 2700 ' ' ' ' ] L1mdA2 TATTCCACGA CAAAACCAAG TTCACACAAT ATCTTTCCAC GAATCCAGCC Dat ---------- ---------- ---------- ---------- ---------- Af081112 .......... .........a .....g..t. ....c..... .......... Af081107 .......... .........a .....g..t. ....c..... .......... Ac5938b .......... .........a .....g..t. ....c..... .......... Tfnode2 .......... .........a .....g..t. ....c..... .......... Ac4405lr ---------- ---------- ---------- ---------- ---------- Af081113 .......... .........a .....g..t. ....c..... .......... Af081106 .......... .........a .....g..t. ....c..... .......... D2 ---------- ---------- ---------- ---------- ---------- D3 ---------- ---------- ---------- ---------- ---------- L1md4 ---------- ---------- ---------- ---------- ---------- Dab ---------- ---------- ---------- ---------- ---------- Dar ---------- ---------- ---------- ---------- ---------- Daq ---------- ---------- ---------- ---------- ---------- Dap ---------- ---------- ---------- ---------- ---------- Daa ---------- ---------- ---------- ---------- ---------- Dae ---------- ---------- ---------- ---------- ---------- Dan ---------- ---------- ---------- ---------- ---------- L1orl .......... .........a .....g..t. ....c..... .......... Musmht ---------- ---------- ---------- ---------- ---------- Dad ---------- ---------- ---------- ---------- ---------- Af081111 .......... .........a .....g..t. ....c..... .......... Af081109 .......... .........a .....g..t. ....c..... .......... L1spa .......... .........a .....g..t. ....c..... .......... Tfnode1 .......... .........a .....g..t. ....c..... .......... [ 2750 ' ' ' ' ] L1mdA2 CTTCAAAGGA TAATAACAGA AAAGAAACAA TACAAGGACG GAAATCACGC Dat ---------- ---------- ---------- ---------- ---------- Af081112 .......... .......... ...a..c... ......a... .g..ca.... Af081107 .......... .g........ ...a..c... ......a... .g..ca.... Ac5938b .......... .......... ...a..c... ......a... .g..ca.... Tfnode2 .......... .......... ...a..c... ......a... .g..ca.... Ac4405lr ---------- ---------- ---------- ---------- ---------- Af081113 .......... .......... ...a..c... ......a... .g..ca.... Af081106 .......... .......... ...a..c... ......a... .g..ca.... D2 ---------- ---------- ---------- ---------- ---------- D3 ---------- ---------- ---------- ---------- ---------- L1md4 ---------- ---------- ---------- ---------- ---------- Dab ---------- ---------- ---------- ---------- ---------- Dar ---------- ---------- ---------- ---------- ---------- Daq ---------- ---------- ---------- ---------- ---------- Dap ---------- ---------- ---------- ---------- ---------- Daa ---------- ---------- ---------- ---------- ---------- Dae ---------- ---------- ---------- ---------- ---------- Dan ---------- ---------- ---------- ---------- ---------- L1orl .......... .......... ...a..c... ......a... .g..ca.... Musmht ---------- ---------- ---------- ---------- ---------- Dad ---------- ---------- ---------- ---------- ---------- Af081111 .......... .......... ...a..c... ......a... .g..ca.... Af081109 .......... .......... ...a..c... ......a... .g..ca.... L1spa .......... .......... ...a..c... ......a... .g..ca.... Tfnode1 .......... .......... ...a..c... ......a... .g..ca.... [ 2800 ' ' ' ' ] L1mdA2 CCTAGAACAA CCAAGAAAGT AATCATTCAA CAAACCAAAA AGAAGACAGC Dat ---------- ---------- ---------- ---------- ---------- Af081112 .......a.. a......g.. ....cc.... ......t... .......... Af081107 .......a.. a......g.. ....cc.... ......t... .......... Ac5938b .......a.. a......g.. ....cc.... ......t... .......... Tfnode2 .......a.. a......g.. ....cc.... ......t... .......... Ac4405lr ---------- ---------- ---------- ---------- ---------- Af081113 .......a.. a......g.. ....cc.... ......t... .......... Af081106 .......a.. a......g.. ....cc.... ......t... .......... D2 ---------- ---------- ---------- ---------- ---------- D3 ---------- ---------- ---------- ---------- ---------- L1md4 ---------- ---------- ---------- ---------- ---------- Dab ---------- ---------- ---------- ---------- ---------- Dar ---------- ---------- ---------- ---------- ---------- Daq ---------- ---------- ---------- ---------- ---------- Dap ---------- ---------- ---------- ---------- ---------- Daa ---------- ---------- ---------- ---------- ---------- Dae ---------- ---------- ---------- ---------- ---------- Dan ---------- ---------- ---------- ---------- ---------- L1orl .......a.. a......g.. ....cc.... ......t... .......... Musmht ---------- ---------- ---------- ---------- ---------- Dad ---------- ---------- ---------- ---------- ---------- Af081111 .......a.. a......g.. ....cc.... ......t... .......... Af081109 .......a.. a......g.. ....cc.... ......t... .......... L1spa .......a.. a......g.. ....cc.... ......t... .......... Tfnode1 .......a.. a......g.. ....cc.... ......t... .......... [ 2850 ' ' ' ] L1mdA2 CACAAGAACA GAATGCCAAC TCTAACAACA AAAATAAAAG GGAGCAACAA Dat ---------- ---------- ---------- ---------- ---------- Af081112 .......... ........c. .t.......t .......c.. .a........ Af081107 .......... ........c. .t.......t .......c.. .a........ Ac5938b .......... ........c. .t.......t .......c.. .a........ Tfnode2 .......... ........c. .t.......t .......c.. .a........ Ac4405lr ---------- ---------- ---------- ---------- ---------- Af081113 .......... ........c. .t.......t .......c.. .a........ Af081106 .......... ........c. .t.......t .......c.. .a........ D2 ---------- ---------- ---------- ---------- ---------- D3 ---------- ---------- ---------- ---------- ---------- L1md4 ---------- ---------- ---------- ---------- ---------- Dab ---------- ---------- ---------- ---------- ---------- Dar ---------- ---------- ---------- ---------- ---------- Daq ---------- ---------- ---------- ---------- ---------- Dap ---------- ---------- ---------- ---------- ---------- Daa ---------- ---------- ---------- ---------- ---------- Dae ---------- ---------- ---------- ---------- ---------- Dan ---------- ---------- ---------- ---------- ---------- L1orl .......... ........c. .t.......t .......c.. .a........ Musmht ---------- ---------- ---------- ---------- ---------- Dad ---------- ---------- ---------- ---------- ---------- Af081111 .......... ........c. .t.......t .......c.. .a........ Af081109 .......... ........c. .t.......t .......c.. .a........ L1spa .......... ........c. .t.......t .......c.. .a........ Tfnode1 .......... ........c. .t.......t .......c.. .a........ [ 2900 ' ' ' ] L1mdA2 TTACTTTTCC TTAATATCTC TTAATATCAA TGGACTCAAT TCCCCAATAA Dat ---------- ---------- ---------- ---------- ---------- Af081112 .......... .......... ....c..... ...t.....c ..g....... Af081107 .......... .......... ....c..... ...t.....c ..g....... Ac5938b .......... .......... ....c..... ...t.....c ..g....... Tfnode2 .......... .......... ....c..... ...t.....c ..g....... Ac4405lr ---------- ---------- ---------- ---------- ---------- Af081113 .......... .......... ....c..... ...t.....c ..g....... Af081106 .......... .......... ....c..... ...t.....c ..g....... D2 ---------- ---------- ---------- ---------- ---------- D3 ---------- ---------- ---------- ---------- ---------- L1md4 ---------- ---------- ---------- ---------- ---------- Dab ---------- ---------- ---------- ---------- ---------- Dar ---------- ---------- ---------- ---------- ---------- Daq ---------- ---------- ---------- ---------- ---------- Dap ---------- ---------- ---------- ---------- ---------- Daa ---------- ---------- ---------- ---------- ---------- Dae ---------- ---------- ---------- ---------- ---------- Dan ---------- ---------- ---------- ---------- ---------- L1orl .......... .......... ....c..... ...t.....c ..g....... Musmht ---------- ---------- ---------- ---------- ---------- Dad ---------- ---------- ---------- ---------- ---------- Af081111 .......... .......... ....c..... ...t.....c ..g....... Af081109 .......... .......... ....c..... ...t.....c ..g....... L1spa .......... .......... ....c..... ...t.....c ..g....... Tfnode1 .......... .......... ....c..... ...t.....c ..g....... [ 2950 ' ' ' ' ] L1mdA2 AAAGACATAG ACTAACAGAC TGGCTACACA AACAGGACCC AACATTCTGC Dat ---------- ---------- ---------- ---------- ---------- Af081112 .......... .......a.. .......... ....a..... ......t... Af081107 .......... .......a.. .......... ....a..... ......t... Ac5938b .......... .......a.. .......... ....a..... ......t... Tfnode2 .......... .......a.. .......... ....a..... ......t... Ac4405lr ---------- ---------- ---------- ---------- ---------- Af081113 .......... .......a.. .......... ....a..... ......t... Af081106 .......... .......a.. .......... ....a..... ......t... D2 ---------- ---------- ---------- ---------- ---------- D3 ---------- ---------- ---------- ---------- ---------- L1md4 ---------- ---------- ---------- ---------- ---------- Dab ---------- ---------- ---------- ---------- ---------- Dar ---------- ---------- ---------- ---------- ---------- Daq ---------- ---------- ---------- ---------- ---------- Dap ---------- ---------- ---------- ---------- ---------- Daa ---------- ---------- ---------- ---------- ---------- Dae ---------- ---------- ---------- ---------- ---------- Dan ---------- ---------- ---------- ---------- ---------- L1orl .......... .......a.. .......... ....a..... ......t... Musmht ---------- ---------- ---------- ---------- ---------- Dad ---------- ---------- ---------- ---------- ---------- Af081111 .......... .......a.. .......... ....a..... ......t... Af081109 .......... .......a.. .......... ....a..... ......t... L1spa .......... .......a.. .......... ....a..... ......t... Tfnode1 .......... .......a.. .......... ....a..... ......t... [ 3000 ' ' ' ' ] L1mdA2 TGCTTACAGG AAACCCATCT CAGGGAAAAA GACAGACACT ACCTCAGAGT Dat ---------- ---------- ---------- ---------- ---------- Af081112 .......... ....t..... ...a...... ..t....... ........a. Af081107 .......... ....t..... ...a...... ..t....... ........a. Ac5938b .......... ....t..... ...a...... ..t....... ........a. Tfnode2 .......... ....t..... ...a...... ..t....... ........a. Ac4405lr ---------- ---------- ---------- ---------- ---------- Af081113 .......... ....t..... ...a...... ..t....... ........a. Af081106 .......... ....t..... ...a...... ..t....... ........a. D2 ---------- ---------- ---------- ---------- ---------- D3 ---------- ---------- ---------- ---------- ---------- L1md4 ---------- ---------- ---------- ---------- ---------- Dab ---------- ---------- ---------- ---------- ---------- Dar ---------- ---------- ---------- ---------- ---------- Daq ---------- ---------- ---------- ---------- ---------- Dap ---------- ---------- ---------- ---------- ---------- Daa ---------- ---------- ---------- ---------- ---------- Dae ---------- ---------- ---------- ---------- ---------- Dan ---------- ---------- ---------- ---------- ---------- L1orl .......... ....t..... ...a...... ..t....... ........a. Musmht ---------- ---------- ---------- ---------- ---------- Dad ---------- ---------- ---------- ---------- ---------- Af081111 .......... ....t..... ...a...... ..t....... ........a. Af081109 .......... ....t..... ...a...... ..t....... ........a. L1spa .......... ....t..... ...a...... ..t....... ........a. Tfnode1 .......... ....t..... ...a...... ..t....... ........a. [ 3050 ' ' ' ' ] L1mdA2 GAAAGGCTGG AAAACAATTT TCCAAGCAAA TGGACTGAAG AAACAAGCTG Dat ---------- ---------- ---------- ---------- ---------- Af081112 .......... .......... .......... ...ta..... ........a. Af081107 .......... .......... .......... ...ta..... ........a. Ac5938b .......... .......... .......... ...ta..... ........a. Tfnode2 .......... .......... .......... ...ta..... ........a. Ac4405lr ---------- ---------- ---------- ---------- ---------- Af081113 .......... .......... .......... ...ta..... ........a. Af081106 .......... .......... .......... ...ta..... ........a. D2 ---------- ---------- ---------- ---------- ---------- D3 ---------- ---------- ---------- ---------- ---------- L1md4 ---------- ---------- ---------- ---------- ---------- Dab ---------- ---------- ---------- ---------- ---------- Dar ---------- ---------- ---------- ---------- ---------- Daq ---------- ---------- ---------- ---------- ---------- Dap ---------- ---------- ---------- ---------- ---------- Daa ---------- ---------- ---------- ---------- ---------- Dae ---------- ---------- ---------- ---------- ---------- Dan ---------- ---------- ---------- ---------- ---------- L1orl .......... .......... .......... ...ta..... ........a. Musmht ---------- ---------- ---------- ---------- ---------- Dad ---------- ---------- ---------- ---------- ---------- Af081111 .......... .......... .......... ...ta..... ........a. Af081109 .......... .......... .......... ...ta..... ........a. L1spa .......... .......... .......... ...ta..... ........a. Tfnode1 .......... .......... .......... ...ta..... ........a. [ 3100 ' ' ' ' ] L1mdA2 GAGTAGCCAT TTTAATATCG GATAAAATCG ACTTCCAACC CAAAGTTATC Dat ---------- ---------- ---------- ---------- ---------- Af081112 .......... cc.......t .....g..t. .......... ......c... Af081107 .......... cc.......t .....g..t. .......... ......c... Ac5938b .......... cc.......t .....g..t. .......... ......c... Tfnode2 .......... cc.......t .....g..t. .......... ......c... Ac4405lr ---------- ---------- ---------- ---------- ---------- Af081113 .......... cc.......t .....g..t. .......... ......c... Af081106 .......... cc.......t .....g..t. .......... ......c... D2 ---------- ---------- ---------- ---------- ---------- D3 ---------- ---------- ---------- ---------- ---------- L1md4 ---------- ---------- ---------- ---------- ---------- Dab ---------- ---------- ---------- ---------- ---------- Dar ---------- ---------- ---------- ---------- ---------- Daq ---------- ---------- ---------- ---------- ---------- Dap ---------- ---------- ---------- ---------- ---------- Daa ---------- ---------- ---------- ---------- ---------- Dae ---------- ---------- ---------- ---------- ---------- Dan ---------- ---------- ---------- ---------- ---------- L1orl .......... cc.......t .....g..t. .......... ......c... Musmht ---------- ---------- ---------- ---------- ---------- Dad ---------- ---------- ---------- ---------- ---------- Af081111 .......... cc.......t .....g..t. .......... ......c... Af081109 .......... cc.......t .....g..t. .......... ......c... L1spa .......... cc.......t .....g..t. .......... ......c... Tfnode1 .......... cc.......t .....g..t. .......... ......c... [ 3150 ' ' ' ' ] L1mdA2 AAAAAAGACA AGGAGGGACA CTTCATACTC ATCAAAGGTA AAATCCTCCA Dat ---------- ---------- ---------- ---------- ---------- Af081112 .......... .......... ......t... .......... .......... Af081107 .......... .......... ......t... .......... .......... Ac5938b .......... .......... ......t... .......... .......... Tfnode2 .......... .......... ......t... .......... .......... Ac4405lr ---------- ---------- ---------- ---------- ---------- Af081113 .......... .......... ......t... .......... .......... Af081106 .......... .......... ......t... .......... .......... D2 ---------- ---------- ---------- ---------- ---------- D3 ---------- ---------- ---------- ---------- ---------- L1md4 ---------- ---------- ---------- ---------- ---------- Dab ---------- ---------- ---------- ---------- ---------- Dar ---------- ---------- ---------- ---------- ---------- Daq ---------- ---------- ---------- ---------- ---------- Dap ---------- ---------- ---------- ---------- ---------- Daa ---------- ---------- ---------- ---------- ---------- Dae ---------- ---------- ---------- ---------- ---------- Dan ---------- ---------- ---------- ---------- ---------- L1orl .......... .......... ......t... .......... .......... Musmht ---------- ---------- ---------- ---------- ---------- Dad ---------- ---------- ---------- ---------- ---------- Af081111 .......... .......... ......t... .......... .......... Af081109 .......... .......... ......t... .......... .......... L1spa .......... .......... ......t... .......... .......... Tfnode1 .......... .......... ......t... .......... .......... [ 3200 ' ' ' ' ] L1mdA2 AGAGGAACTC TCAATTCTGA ATATCTACGC ACCAAATGCA AGGGCAGCCA Dat ---------- ---------- ---------- ---------- ---------- Af081112 .......... .......... .......t.. t......a.. ..a....... Af081107 .......... .......... .......t.. t......a.. ..a....... Ac5938b .......... .......... .......t.. t......a.. ..a...a... Tfnode2 .......... .......... .......t.. t......a.. ..a....... Ac4405lr ---------- ---------- ---------- ---------- ---------- Af081113 .......... .......... .......t.. t......a.. ..a....... Af081106 .......... .......... .......t.. t......a.. ..a....... D2 ---------- ---------- ---------- ---------- ---------- D3 ---------- ---------- ---------- ---------- ---------- L1md4 ---------- ---------- ---------- ---------- ---------- Dab ---------- ---------- ---------- ---------- ---------- Dar ---------- ---------- ---------- ---------- ---------- Daq ---------- ---------- ---------- ---------- ---------- Dap ---------- ---------- ---------- ---------- ---------- Daa ---------- ---------- ---------- ---------- ---------- Dae ---------- ---------- ---------- ---------- ---------- Dan ---------- ---------- ---------- ---------- ---------- L1orl .......... .......... .......t.. t......aa. ..a....... Musmht ---------- ---------- ---------- ---------- ---------- Dad ---------- ---------- ---------- ---------- ---------- Af081111 .......... .......... .......t.. t......a.. ..a....... Af081109 .......... .......... .......t.. t......a.. ..a....... L1spa .......... .......... .......t.. t......a.. ..a....... Tfnode1 .......... .......... .......t.. t......a.. ..a....... [ 3250 ' ' ' ' ] L1mdA2 CATTCATTAG AGACACTTTA GTAAAGCTCA AAGCATACAT TGCACCTCAC Dat ---------- ---------- ---------- ---------- ---------- Af081112 ......c..a ...a...... .......... .....c.... ...g...... Af081107 ......c..a ...a...... .......... .....c.... ...g...... Ac5938b ......c..a ...a...... .......... .....c.... ...g...... Tfnode2 ......c..a ...a...... .......... .....c.... ...g...... Ac4405lr ---------- ---------- ---------- ---------- ---------- Af081113 ......c..a ...a...... .......... .....c.... ...g...... Af081106 ......c..a ...a...... .......... .....c.... ...g...... D2 ---------- ---------- ---------- ---------- ---------- D3 ---------- ---------- ---------- ---------- ---------- L1md4 ---------- ---------- ---------- ---------- ---------- Dab ---------- ---------- ---------- ---------- ---------- Dar ---------- ---------- ---------- ---------- ---------- Daq ---------- ---------- ---------- ---------- ---------- Dap ---------- ---------- ---------- ---------- ---------- Daa ---------- ---------- ---------- ---------- ---------- Dae ---------- ---------- ---------- ---------- ---------- Dan ---------- ---------- ---------- ---------- ---------- L1orl ......c..a ...a...... .......... .....c.... ...g...... Musmht ---------- ---------- ---------- ---------- ---------- Dad ---------- ---------- ---------- ---------- ---------- Af081111 ......c..a ...a...... .......... .....c.... ...g...... Af081109 ......c..a ...a...... .......... .....c.... ...g...... L1spa ......c..a ...a...... .......... .....c.... ...g...... Tfnode1 ......c..a ...a...... .......... .....c.... ...g...... [ 3300 ' ' ' ' ] L1mdA2 ACAATAATAG TGGGAGACTT CAACACACCA CTTTCTTCAA AGGACAGATC Dat ---------- ---------- ---------- ---------- ---------- Af081112 .......... .......... .......... .....ac... t......... Af081107 .......... .......... .......... .....ac... t......... Ac5938b .......... .......... .......... .....ac... t......... Tfnode2 .......... .......... .......... .....ac... t......... Ac4405lr ---------- ---------- ---------- ---------- ---------- Af081113 .......... .......... .......... .....ac... t......... Af081106 .......... .......... .......... .....ac... t......... D2 ---------- ---------- ---------- ---------- ---------- D3 ---------- ---------- ---------- ---------- ---------- L1md4 ---------- ---------- ---------- ---------- ---------- Dab ---------- ---------- ---------- ---------- ---------- Dar ---------- ---------- ---------- ---------- ---------- Daq ---------- ---------- ---------- ---------- ---------- Dap ---------- ---------- ---------- ---------- ---------- Daa ---------- ---------- ---------- ---------- ---------- Dae ---------- ---------- ---------- ---------- ---------- Dan ---------- ---------- ---------- ---------- ---------- L1orl .......... .......... .......... .....ac... t......... Musmht ---------- ---------- ---------- ---------- ---------- Dad ---------- ---------- ---------- ---------- ---------- Af081111 .......... .......... .......... .....ac... t......... Af081109 .......... .......... .......... .....ac... t......... L1spa .......... .......... .......... .....ac... t......... Tfnode1 .......... .......... .......... .....ac... t......... [ 3350 ' ' ' ' ] L1mdA2 GTGGAAACAG AAACTAAACA GGGACACAGT GAAACTAACA GAAGTTATGA Dat ---------- ---------- ---------- ---------- ---------- Af081112 a......... .......... ........c. .......... .....g.... Af081107 a......... .......... ........c. .......... .....g.... Ac5938b a......... .......... ........c. .......... .....g.... Tfnode2 a......... .......... ........c. .......... .....g.... Ac4405lr ---------- ---------- ---------- ---------- ---------- Af081113 a......... .......... ........c. .......... .....g.... Af081106 a......... .......... ........c. .......... .....g.... D2 ---------- ---------- ---------- ---------- ---------- D3 ---------- ---------- ---------- ---------- ---------- L1md4 ---------- ---------- ---------- ---------- ---------- Dab ---------- ---------- ---------- ---------- ---------- Dar ---------- ---------- ---------- ---------- ---------- Daq ---------- ---------- ---------- ---------- ---------- Dap ---------- ---------- ---------- ---------- ---------- Daa ---------- ---------- ---------- ---------- ---------- Dae ---------- ---------- ---------- ---------- ---------- Dan ---------- ---------- ---------- ---------- ---------- L1orl a......... .......... ........c. .......... .....g.... Musmht ---------- ---------- ---------- ---------- ---------- Dad ---------- ---------- ---------- ---------- ---------- Af081111 a......... .......... ........c. .......... .....g.... Af081109 a......... .......... ........c. .......... .....g.... L1spa a......... .......... ........c. .......... .....g.... Tfnode1 a......... .......... ........c. .......... .....g.... [ 3400 ' ' ' ' ] L1mdA2 AACAAATGGA CCTGACAGAT ATCTACAGAA CATTTTATCC TAAAACAAAA Dat ---------- ---------- ---------- ---------- ---------- Af081112 .......... t......... .......... .......... .......... Af081107 .......... t......... .......... .......... .......... Ac5938b .......... t..a...... .......... .......... .......... Tfnode2 .......... t......... .......... .......c.. .......... Ac4405lr ---------- ---------- ---------- ---------- ---------- Af081113 .......... t......... .......... .......c.. .......... Af081106 .......... t......... .......... .......c.. .......... D2 ---------- ---------- ---------- ---------- ---------- D3 ---------- ---------- ---------- ---------- ---------- L1md4 ---------- ---------- ---------- ---------- ---------- Dab ---------- ---------- ---------- ---------- ---------- Dar ---------- ---------- ---------- ---------- ---------- Daq ---------- ---------- ---------- ---------- ---------- Dap ---------- ---------- ---------- ---------- ---------- Daa ---------- ---------- ---------- ---------- ---------- Dae ---------- ---------- ---------- ---------- ---------- Dan ---------- ---------- ---------- ---------- ---------- L1orl .......... t......... .......... ......tc.. .......... Musmht ---------- ---------- ---------- ---------- ---------- Dad ---------- ---------- ---------- ---------- ---------- Af081111 .......... t......... .......... .......... .......... Af081109 .......... t......... .......... .......c.. .......... L1spa .......... t......... .......... .......c.. .......... Tfnode1 .......... t......... .......... .......... .......... [ 3450 ' ' ' ' ] L1mdA2 GGATATACCT TCTTCTCAGC ACCTCACGGG ACCTTCTCCA AAATTGACCA Dat ---------- ---------- ---------- ---------- ---------- Af081112 .......... .......... ......t..t .......... .......... Af081107 .......... .......... ......t..t .......... .......... Ac5938b .......... .......... ......t..t .......... .......... Tfnode2 .......... .......... ......t..t .......... .......... Ac4405lr ---------- ---------- ---------- ---------- ---------- Af081113 .......... .......... ......t..t .......... .......... Af081106 .......... .......... ......t..t .......... .......... D2 ---------- ---------- ---------- ---------- ---------- D3 ---------- ---------- ---------- ---------- ---------- L1md4 ---------- ---------- ---------- ---------- ---------- Dab ---------- ---------- ---------- ---------- ---------- Dar ---------- ---------- ---------- ---------- ---------- Daq ---------- ---------- ---------- ---------- ---------- Dap ---------- ---------- ---------- ---------- ---------- Daa ---------- ---------- ---------- ---------- ---------- Dae ---------- ---------- ---------- ---------- ---------- Dan ---------- ---------- ---------- ---------- ---------- L1orl .......... .......... ......t..t .......... .......... Musmht ---------- ---------- ---------- ---------- ---------- Dad ---------- ---------- ---------- ---------- ---------- Af081111 .......... .......... ......t..t .......... .......... Af081109 .......... .......... ......t..t .......... .......... L1spa .......... .......... ......t..t .......... .......... Tfnode1 .......... .......... ......t..t .......... .......... [ 3500 ' ' ' ' ] L1mdA2 TATAATTGGT CACAAAACAG GCCTCAATAG ATACAAAAAT ATTGAAATTG Dat ---------- ---------- ---------- ---------- ---------- Af081112 c.....a... ......t... .......c.. ..t....... .......... Af081107 c.....a... ......t... .......c.. ..t....... .......... Ac5938b c.....a... ......t... .......c.. ..t....... .......... Tfnode2 c.....a... ......t... .......c.. ..t....... .......... Ac4405lr ---------- ---------- ---------- ---------- ---------- Af081113 c.....a... ......t... .......c.. ..t....... .......... Af081106 c.....a... ......t... .......c.. ..t....... .......... D2 ---------- ---------- ---------- ---------- ---------- D3 ---------- ---------- ---------- ---------- ---------- L1md4 ---------- ---------- ---------- ---------- ---------- Dab ---------- ---------- ---------- ---------- ---------- Dar ---------- ---------- ---------- ---------- ---------- Daq ---------- ---------- ---------- ---------- ---------- Dap ---------- ---------- ---------- ---------- ---------- Daa ---------- ---------- ---------- ---------- ---------- Dae ---------- ---------- ---------- ---------- ---------- Dan ---------- ---------- ---------- ---------- ---------- L1orl c.....a... ......t... .......c.. ..t....... .......... Musmht ---------- ---------- ---------- ---------- ---------- Dad ---------- ---------- ---------- ---------- ---------- Af081111 c.....a... ......t... .......c.. ..t....... .......... Af081109 c.....a... ......t... .......c.. ..ta...... .......... L1spa c.....a... ......t... .......c.. ..ta...... .......... Tfnode1 c.....a... ......t... .......c.. ..t....... .......... [ 3550 ' ' ' ' ] L1mdA2 TCCCATGTAT CCTATCAGAC CACCATGGCC TAAGACTGAT CTTCAATAAC Dat ---------- ---------- ---------- ---------- ---------- Af081112 .......... .........t .......ca. ....g..... .......... Af081107 .......... .........t ......aca. ....g..... .......... Ac5938b .......... .........t .......ca. ....g..... .......... Tfnode2 .......... .........t .......ca. ....g..... .......... Ac4405lr ---------- ---------- ---------- ---------- ---------- Af081113 .......... .........t .......ca. ....g..... .......... Af081106 .......... .........t .......ca. ....g..... .......... D2 ---------- ---------- ---------- ---------- ---------- D3 ---------- ---------- ---------- ---------- ---------- L1md4 ---------- ---------- ---------- ---------- ---------- Dab ---------- ---------- ---------- ---------- ---------- Dar ---------- ---------- ---------- ---------- ---------- Daq ---------- ---------- ---------- ---------- ---------- Dap ---------- ---------- ---------- ---------- ---------- Daa ---------- ---------- ---------- ---------- ---------- Dae ---------- ---------- ---------- ---------- ---------- Dan ---------- ---------- ---------- ---------- ---------- L1orl .......... .........t .......ca. ....g..... .......... Musmht ---------- ---------- ---------- ---------- ---------- Dad ---------- ---------- ---------- ---------- ---------- Af081111 .......... .........t .......ca. ....g..... .......... Af081109 .......... .........t .......ca. ....g..... .......... L1spa .......... .........t .......ca. ....g..... .......... Tfnode1 .......... .........t .......ca. ....g..... .......... [ 3600 ' ' ' ' ] L1mdA2 AACATAAATA ATGGAAAGCC AACATTCACG TGGAAACTGA ATAACACTCT Dat ---------- ---------- ---------- ---------- ---------- Af081112 ..a....... .ca....... .........a .......... .c........ Af081107 ..a....... .ca....... .........a .......... .c........ Ac5938b ..a....... .ca....... .........a .......... .c........ Tfnode2 ..a....... .ca....... .........a .......... .c........ Ac4405lr ---------- ---------- ---------- ---------- ---------- Af081113 ..a....... .ca....... .........a .......... .c........ Af081106 ..a....... .ca....... .........a .......... .c........ D2 ---------- ---------- ---------- ---------- ---------- D3 ---------- ---------- ---------- ---------- ---------- L1md4 ---------- ---------- ---------- ---------- ---------- Dab ---------- ---------- ---------- ---------- ---------- Dar ---------- ---------- ---------- ---------- ---------- Daq ---------- ---------- ---------- ---------- ---------- Dap ---------- ---------- ---------- ---------- ---------- Daa ---------- ---------- ---------- ---------- ---------- Dae ---------- ---------- ---------- ---------- ---------- Dan ---------- ---------- ---------- ---------- ---------- L1orl ..a....... .ca....... .........a .......... .c........ Musmht ---------- ---------- ---------- ---------- ---------- Dad ---------- ---------- ---------- ---------- ---------- Af081111 ..a....... .ca....... .........a .......... .c........ Af081109 ..a....... .ca....... .........a .......... .c........ L1spa ..a....... .ca....... .........a .......... .c........ Tfnode1 ..a....... .ca....... .........a .......... .c........ [ 3650 ' ' ' ' ] L1mdA2 TCTCAATGAT ACCTTGGTCA AGGAAGGAAT AAAGAAAGAA ATTAAAGACT Dat ---------- ---------- ---------- ---------- ---------- Af081112 .......... .......... .......... .......... .......... Af081107 .......... .......... .......... .......... .......... Ac5938b .......... .......... .......... .......... .......... Tfnode2 .......... .......... .......... .......... .......... Ac4405lr ---------- ---------- ---------- ---------- ---------- Af081113 .......... .......... .......... .......... .......... Af081106 .......... .......... .......... .......... .......... D2 ---------- ---------- ---------- ---------- ---------- D3 ---------- ---------- ---------- ---------- ---------- L1md4 ---------- ---------- ---------- ---------- ---------- Dab ---------- ---------- ---------- ---------- ---------- Dar ---------- ---------- ---------- ---------- ---------- Daq ---------- ---------- ---------- ---------- ---------- Dap ---------- ---------- ---------- ---------- ---------- Daa ---------- ---------- ---------- ---------- ---------- Dae ---------- ---------- ---------- ---------- ---------- Dan ---------- ---------- ---------- ---------- ---------- L1orl .......... .......... .......... .......... .......... Musmht ---------- ---------- ---------- ---------- ---------- Dad ---------- ---------- ---------- ---------- ---------- Af081111 .......... .......... .......... .......... .......... Af081109 .......... .......... .......... .......... .......... L1spa .......... .......... .......... .......... .......... Tfnode1 .......... .......... .......... .......... .......... [ 3700 ' ' ' ' ] L1mdA2 TTTTAGAGTT TAATGAAAAT GAAGCCACAA CGTACCCAAA CCTATGGGAC Dat ---------- ---------- ---------- ---------- ---------- Af081112 .......... .......... .......... .......... ...t...... Af081107 .......... .......... .......... .......... ...t...... Ac5938b .......... .......... .......... .......... ...t...... Tfnode2 .......... .......... .......... .......... ...t...... Ac4405lr ---------- ---------- ---------- ---------- ---------- Af081113 .......... .......... .......... .......... ...t...... Af081106 .......... .......... .......... .......... ...t...... D2 ---------- ---------- ---------- ---------- ---------- D3 ---------- ---------- ---------- ---------- ---------- L1md4 ---------- ---------- ---------- ---------- ---------- Dab ---------- ---------- ---------- ---------- ---------- Dar ---------- ---------- ---------- ---------- ---------- Daq ---------- ---------- ---------- ---------- ---------- Dap ---------- ---------- ---------- ---------- ---------- Daa ---------- ---------- ---------- ---------- ---------- Dae ---------- ---------- ---------- ---------- ---------- Dan ---------- ---------- ---------- ---------- ---------- L1orl .......... .......... .......... .......... ...t...... Musmht ---------- ---------- ---------- ---------- ---------- Dad ---------- ---------- ---------- ---------- ---------- Af081111 .......... .......... .......... ......t... ...t...... Af081109 .......... .......... .......... .......... ...t...... L1spa .......... .......... .......... .......... ...t...... Tfnode1 .......... .......... .......... .......... ...t...... [ 3750 ' ' ' ' ] L1mdA2 ACAATGAAAG CATTTCTAAG AGGGAAACTC ATAGCGCTGA GTGCCTCCAA Dat ---------- ---------- ---------- ---------- ---------- Af081112 .......... .......... .......... .....ta... ......t... Af081107 .......... .......... .......... .....t.... .........t Ac5938b .......... .......... .......... .....ta... ......t... Tfnode2 .......... .......... .......... .....ta... ......t... Ac4405lr ---------- ---------- ---------- ---------- ---------- Af081113 .......... .......... .......... .....ta... ......t... Af081106 .......... .......... .......... .....ta... ......t... D2 ---------- ---------- ---------- ---------- ---------- D3 ---------- ---------- ---------- ---------- ---------- L1md4 ---------- ---------- ---------- ---------- ---------- Dab ---------- ---------- ---------- ---------- ---------- Dar ---------- ---------- ---------- ---------- ---------- Daq ---------- ---------- ---------- ---------- ---------- Dap ---------- ---------- ---------- ---------- ---------- Daa ---------- ---------- ---------- ---------- ---------- Dae ---------- ---------- ---------- ---------- ---------- Dan ---------- ---------- ---------- ---------- ---------- L1orl .......... .......... .......... .....ta... ......t... Musmht ---------- ---------- ---------- ---------- ---------- Dad ---------- ---------- ---------- ---------- ---------- Af081111 .......... .......... .......... .....ta... ......t... Af081109 .......... .......... .......... .....ta... ......t... L1spa .......... .......... .......... .....ta... ......t... Tfnode1 .......... .......... .......... .....ta... ......t... [ 3800 ' ' ' ' ] L1mdA2 GAAGAAACGG GAGACAGCAC ATACTAGCAG CTTGACAACA CATCTAAAAG Dat ---------- ---------- ---------- ---------- ---------- Af081112 ...a...... ....g..... .......... .......... .......... Af081107 t......... ....g..... .......... .......... .......... Ac5938b ...a...... ....g..... .......... .........- .......... Tfnode2 ...a...... ....g..... .......... .......... .......... Ac4405lr ---------- ---------- ---------- ---------- ---------- Af081113 ...a...... ....g..... .......... .......... .......... Af081106 ...a...... ....g..... .......... .......... .......... D2 ---------- ---------- ---------- ---------- ---------- D3 ---------- ---------- ---------- ---------- ---------- L1md4 ---------- ---------- ---------- ---------- ---------- Dab ---------- ---------- ---------- ---------- ---------- Dar ---------- ---------- ---------- ---------- ---------- Daq ---------- ---------- ---------- ---------- ---------- Dap ---------- ---------- ---------- ---------- ---------- Daa ---------- ---------- ---------- ---------- ---------- Dae ---------- ---------- ---------- ---------- ---------- Dan ---------- ---------- ---------- ---------- ---------- L1orl ...a...... ....g..... .......... .......... .......... Musmht ---------- ---------- ---------- ---------- ---------- Dad ---------- ---------- ---------- ---------- ---------- Af081111 ...a...... ....g..... .......... .......... .......... Af081109 ...a...... ....g..... .......... .......... .......... L1spa ...a...... ....g..... .......... .......... .......... Tfnode1 ...a...... ....g..... .......... .......... .......... [ 3850 ' ' ' ' ] L1mdA2 CCCTAGAAAA AAAGGAAGCA AATTCACCCA AGAGGAGTAG ACGGCAGGAA Dat ---------- ---------- ---------- ---------- ---------- Af081112 .t........ .......... .......... .......... .......... Af081107 .t........ .......... .......... .......... .......... Ac5938b .t........ .......... .......... .......... .......... Tfnode2 .t........ .......... .......... .......... .......... Ac4405lr ---------- ---------- ---------- ---------- ---------- Af081113 .t........ .......... .......... .......... .......... Af081106 .t........ .......... .......... .......... .......... D2 ---------- ---------- ---------- ---------- ---------- D3 ---------- ---------- ---------- ---------- ---------- L1md4 ---------- ---------- ---------- ---------- ---------- Dab ---------- ---------- ---------- ---------- ---------- Dar ---------- ---------- ---------- ---------- ---------- Daq ---------- ---------- ---------- ---------- ---------- Dap ---------- ---------- ---------- ---------- ---------- Daa ---------- ---------- ---------- ---------- ---------- Dae ---------- ---------- ---------- ---------- ---------- Dan ---------- ---------- ---------- ---------- ---------- L1orl .t........ .......... .......... .......... .......... Musmht ---------- ---------- ---------- ---------- ---------- Dad ---------- ---------- ---------- ---------- ---------- Af081111 .t........ .......... .......... .......... .......... Af081109 .t........ .......... .......... .......... .......... L1spa .t........ .......... .......... .......... .......... Tfnode1 .t........ .......... .......... .......... .......... [ 3900 ' ' ' ' ] L1mdA2 ATAATCAAAC TCAGGGGTGA AATCAACCAA GTGGAAACAA GAAGAACTAT Dat ---------- ---------- ---------- ---------- ---------- Af081112 .......... .......... .......... .......... .......... Af081107 .......... .......... .......... .......... .......... Ac5938b .......... .......... .......... .......... .......... Tfnode2 .......... .......... .......... .......... .......... Ac4405lr ---------- ---------- ---------- ---------- ---------- Af081113 .......... .......... .......... .......... .......... Af081106 .......... .......... .......... .......... .......... D2 ---------- ---------- ---------- ---------- ---------- D3 ---------- ---------- ---------- ---------- ---------- L1md4 ---------- ---------- ---------- ---------- ---------- Dab ---------- ---------- ---------- ---------- ---------- Dar ---------- ---------- ---------- ---------- ---------- Daq ---------- ---------- ---------- ---------- ---------- Dap ---------- ---------- ---------- ---------- ---------- Daa ---------- ---------- ---------- ---------- ---------- Dae ---------- ---------- ---------- ---------- ---------- Dan ---------- ---------- ---------- ---------- ---------- L1orl .......... .......... .......... .......... .......... Musmht ---------- ---------- ---------- ---------- ---------- Dad ---------- ---------- ---------- ---------- ---------- Af081111 .......... .......... .......... .......... .......... Af081109 .......... .......... .......... .......... .......... L1spa .......... .......... .......... .......... .......... Tfnode1 .......... .......... .......... .......... .......... [ 3950 ' ' ' ' ] L1mdA2 TCAAAGAATT AACCAAACGA GGAGTTGGTT CTTTGAGAAA ATCAACAAGA Dat ---------- ---------- ---------- ---------- ---------- Af081112 .......... .......... .......... .......... .......... Af081107 .......... .......... .......... .......... .......... Ac5938b .......... .......... .......... .......... .......... Tfnode2 .......... .......... .......... .......... .......... Ac4405lr ---------- ---------- ---------- ---------- ---------- Af081113 .......... .......... .......... .......... .......... Af081106 .......... .......... .......... .......... .......... D2 ---------- ---------- ---------- ---------- ---------- D3 ---------- ---------- ---------- ---------- ---------- L1md4 ---------- ---------- ---------- ---------- ---------- Dab ---------- ---------- ---------- ---------- ---------- Dar ---------- ---------- ---------- ---------- ---------- Daq ---------- ---------- ---------- ---------- ---------- Dap ---------- ---------- ---------- ---------- ---------- Daa ---------- ---------- ---------- ---------- ---------- Dae ---------- ---------- ---------- ---------- ---------- Dan ---------- ---------- ---------- ---------- ---------- L1orl .......... .......... .......... .......... .......... Musmht ---------- ---------- ---------- ---------- ---------- Dad ---------- ---------- ---------- ---------- ---------- Af081111 .......... .......... .......... .......... .......... Af081109 .......... .......... .......... .......... .......... L1spa .......... .......... .......... .......... .......... Tfnode1 .......... .......... .......... .......... .......... [ 4000 ' ' ' ' ] L1mdA2 TAGATAAACC CTTAGCTAGA CTCACTAAAG GGCACAGGGA CAAAATCCTA Dat ---------- ---------- ---------- ---------- ---------- Af081112 .......... ........c. .......... .......... .......... Af081107 .......... .......... .......... .......... .......... Ac5938b .......... .......... .......... .......... .......... Tfnode2 .......... .......... .......... .......... .......... Ac4405lr ---------- ---------- ---------- ---------- ---------- Af081113 .......... .......... .......... .......... .......... Af081106 .......... .......... .......... .......... .......... D2 ---------- ---------- ---------- ---------- ---------- D3 ---------- ---------- ---------- ---------- ---------- L1md4 ---------- ---------- ---------- ---------- ---------- Dab ---------- ---------- ---------- ---------- ---------- Dar ---------- ---------- ---------- ---------- ---------- Daq ---------- ---------- ---------- ---------- ---------- Dap ---------- ---------- ---------- ---------- ---------- Daa ---------- ---------- ---------- ---------- ---------- Dae ---------- ---------- ---------- ---------- ---------- Dan ---------- ---------- ---------- ---------- ---------- L1orl .......... .......... .......... .......... .......... Musmht ---------- ---------- ---------- ---------- ---------- Dad ---------- ---------- ---------- ---------- ---------- Af081111 .......... .......... .......... .......... .......... Af081109 .......... .......... .......... .......... .......... L1spa .......... .......... .......... .......... .......... Tfnode1 .......... .......... .......... .......... .......... [ 4050 ' ' ' ' ] L1mdA2 ATTAACAAAA TCAGAAATGA AAAGGGAGAC ATAACAACAG ATCCTGAAGA Dat ---------- ---------- ---------- ---------- ---------- Af081112 .......... ......c... .......... .......... .......... Af081107 .......... .......... .......... .......... .......... Ac5938b .......... .......... .......... .......... .......... Tfnode2 .......... .......... .......... .......... .......... Ac4405lr ---------- ---------- ---------- ---------- ---------- Af081113 .......... .......... .......... .......... .......... Af081106 .......... .......... .......... .......... .......... D2 ---------- ---------- ---------- ---------- ---------- D3 ---------- ---------- ---------- ---------- ---------- L1md4 ---------- ---------- ---------- ---------- ---------- Dab ---------- ---------- ---------- ---------- ---------- Dar ---------- ---------- ---------- ---------- ---------- Daq ---------- ---------- ---------- ---------- ---------- Dap ---------- ---------- ---------- ---------- ---------- Daa ---------- ---------- ---------- ---------- ---------- Dae ---------- ---------- ---------- ---------- ---------- Dan ---------- ---------- ---------- ---------- ---------- L1orl .......... .......... .......... .......... .......... Musmht ---------- ---------- ---------- ---------- ---------- Dad ---------- ---------- ---------- ---------- ---------- Af081111 .......... .......... .......... .......... .......... Af081109 .......... .......... .......... .......... .......... L1spa .......... .......... .......... .......... .......... Tfnode1 .......... .......... .......... .......... .......... [ 4100 ' ' ' ' ] L1mdA2 AATCCAAAAC ACCATCAGAT CCTTCTACAA AAGGCTATAC TCAACAAAAC Dat ---------- ---------- ---------- ---------- ---------- Af081112 .......... .......... .......... .......... .......... Af081107 .......... .......... .......... ...ct..... .......... Ac5938b .......... .......... .......... .......... .......... Tfnode2 .......... .......... .......... .......... .......... Ac4405lr ---------- ---------- ---------- ---------- ---------- Af081113 .......... .......... .......... .......... .......... Af081106 .......... .......... .......... .......... .......... D2 ---------- ---------- ---------- ---------- ---------- D3 ---------- ---------- ---------- ---------- ---------- L1md4 ---------- ---------- ---------- ---------- ---------- Dab ---------- ---------- ---------- ---------- ---------- Dar ---------- ---------- ---------- ---------- ---------- Daq ---------- ---------- ---------- ---------- ---------- Dap ---------- ---------- ---------- ---------- ---------- Daa ---------- ---------- ---------- ---------- ---------- Dae ---------- ---------- ---------- ---------- ---------- Dan ---------- ---------- ---------- ---------- ---------- L1orl .......... .......... .......... .......... .......... Musmht ---------- ---------- ---------- ---------- ---------- Dad ---------- ---------- ---------- ---------- ---------- Af081111 .......... .......... .......... .......... .......... Af081109 .......... .......... .......... .......... .......... L1spa .......... .......... .......... .......... .......... Tfnode1 .......... .......... .......... .......... .......... [ 4150 ' ' ' ' ] L1mdA2 TGGAAAACCT GGACGAAATG GACAAATTTC TGGACAGATA CCAGGTACCA Dat ---------- ---------- ---------- ---------- ---------- Af081112 .......... .......... .......... .......... .......... Af081107 .......... .......... .......... .......... .......... Ac5938b .......... .......... .......... .......... .......... Tfnode2 .......... .......... .......... .......... .......... Ac4405lr ---------- ---------- ---------- ---------- ---------- Af081113 .......... .......... .......... .......... .......... Af081106 .......... .......... .......... .......... .......... D2 ---------- ---------- ---------- ---------- ---------- D3 ---------- ---------- ---------- ---------- ---------- L1md4 ---------- ---------- ---------- ---------- ---------- Dab ---------- ---------- ---------- ---------- ---------- Dar ---------- ---------- ---------- ---------- ---------- Daq ---------- ---------- ---------- ---------- ---------- Dap ---------- ---------- ---------- ---------- ---------- Daa ---------- ---------- ---------- ---------- ---------- Dae ---------- ---------- ---------- ---------- ---------- Dan ---------- ---------- ---------- ---------- ---------- L1orl .......... .......... .......... .......... .......... Musmht ---------- ---------- ---------- ---------- ---------- Dad ---------- ---------- ---------- ---------- ---------- Af081111 .......... .......... .......... .......... .......... Af081109 .......... .......... .......... .......... .......... L1spa .......... .......... .......... .......... .......... Tfnode1 .......... .......... .......... .......... .......... [ 4200 ' ' ' ' ] L1mdA2 AAGTTGAATC AGGATCAAGT TGACCATCTA AACAGTCCCA TATCACCTAA Dat ---------- ---------- ---------- ---------- ---------- Af081112 .......... .......... .....t.... .......... ....c..... Af081107 .......... .......... .....t.... .......... ....c..... Ac5938b .......... .......... .....t.... .......... ....c..... Tfnode2 .......... .......... .....t.... .......... ....c..... Ac4405lr ---------- ---------- ---------- ---------- ---------- Af081113 .......... .......... .....t.... .......... ....c..... Af081106 .......... .......... .....t.... .......... ....c..... D2 ---------- ---------- ---------- ---------- ---------- D3 ---------- ---------- ---------- ---------- ---------- L1md4 ---------- ---------- ---------- ---------- ---------- Dab ---------- ---------- ---------- ---------- ---------- Dar ---------- ---------- ---------- ---------- ---------- Daq ---------- ---------- ---------- ---------- ---------- Dap ---------- ---------- ---------- ---------- ---------- Daa ---------- ---------- ---------- ---------- ---------- Dae ---------- ---------- ---------- ---------- ---------- Dan ---------- ---------- ---------- ---------- ---------- L1orl .......... .......... .....t.... .......... ....c..... Musmht ---------- ---------- ---------- ---------- ---------- Dad ---------- ---------- ---------- ---------- ---------- Af081111 .......... .......... .....t.... .......... ....c..... Af081109 .......... .......... .....t.... .......... ....c..... L1spa .......... .......... .....t.... .......... ....c..... Tfnode1 .......... .......... .....t.... .......... ....c..... [ 4250 ' ' ' ' ] L1mdA2 AGAAATAGAA GCAGTTATTA ATAGTCTCCC AACCAAAAAA AGCCCAGGAC Dat ---------- ---------- ---------- ---------- ---------- Af081112 .......... .......... ...c...... .g........ .......... Af081107 .......... .......... .......... .g........ .......... Ac5938b .....g.... .......... .......... .g........ .......... Tfnode2 .......... .......... .......... .g........ .......... Ac4405lr ---------- ---------- ---------- ---------- ---------- Af081113 .......... .......... .......... .g........ .......... Af081106 .......... .......... .......... .g........ .......... D2 ---------- ---------- ---------- ---------- ---------- D3 ---------- ---------- ---------- ---------- ---------- L1md4 ---------- ---------- ---------- ---------- ---------- Dab ---------- ---------- ---------- ---------- ---------- Dar ---------- ---------- ---------- ---------- ---------- Daq ---------- ---------- ---------- ---------- ---------- Dap ---------- ---------- ---------- ---------- ---------- Daa ---------- ---------- ---------- ---------- ---------- Dae ---------- ---------- ---------- ---------- ---------- Dan ---------- ---------- ---------- ---------- ---------- L1orl .......... .......... .......... .g........ .......... Musmht ---------- ---------- ---------- ---------- ---------- Dad ---------- ---------- ---------- ---------- ---------- Af081111 .......... .......... .......... .g........ .......... Af081109 .......... .......... .......... .g........ .......... L1spa .......... .......... .......... .g........ .......... Tfnode1 .......... .......... .......... .g........ .......... [ 4300 ' ' ' ' ] L1mdA2 CAGATGGGTT TAGTGCAGAG TTCTATCAGA CCTTCAAAGA AGATCTAATT Dat ---------- ---------- ---------- ---------- ---------- Af081112 ....c..... .......... .......... .......... ........c. Af081107 ....c..... .......... .......... .......... ........c. Ac5938b ....c..... .......... .......... .......... ........c. Tfnode2 ....c..... .......... .......... .......... ........c. Ac4405lr ---------- ---------- ---------- ---------- ---------- Af081113 ....c..... .......... .......... .......... ........c. Af081106 ....c..... .......... .......... .......... ........c. D2 ---------- ---------- ---------- ---------- ---------- D3 ---------- ---------- ---------- ---------- ---------- L1md4 ---------- ---------- ---------- ---------- ---------- Dab ---------- ---------- ---------- ---------- ---------- Dar ---------- ---------- ---------- ---------- ---------- Daq ---------- ---------- ---------- ---------- ---------- Dap ---------- ---------- ---------- ---------- ---------- Daa ---------- ---------- ---------- ---------- ---------- Dae ---------- ---------- ---------- ---------- ---------- Dan ---------- ---------- ---------- ---------- ---------- L1orl ....c..... .......... .......... .......... ........c. Musmht ---------- ---------- ---------- ---------- ---------- Dad ---------- ---------- ---------- ---------- ---------- Af081111 ....c..... .......... .......... .......... ........c. Af081109 ....c..... .......... .......... .......... ........c. L1spa ....c..... .......... .......... .......... ........c. Tfnode1 ....c..... .......... .......... .......... ........c. [ 4350 ' ' ' ' ] L1mdA2 CCAATTCTGC ACAAACTATT TCACAAAATA GAAGTAGAAG GTACTCTACC Dat ---------- ---------- ---------- ---------- ---------- Af081112 ...g...... .......t.. ......g... .......... ...t...... Af081107 ...g...... .......t.. ......g... .......... ...t...... Ac5938b ...g...... .......t.. ......g... .......... ...t...... Tfnode2 ...g...... .......t.. ......g... .......... ...t...... Ac4405lr ---------- ---------- ---------- ---------- ---------- Af081113 ...g...... .......t.. ......g... .......... ...t...... Af081106 ...g...... .......t.. ......g... .......... ...t...... D2 ---------- ---------- ---------- ---------- ---------- D3 ---------- ---------- ---------- ---------- ---------- L1md4 ---------- ---------- ---------- ---------- ---------- Dab ---------- ---------- ---------- ---------- ---------- Dar ---------- ---------- ---------- ---------- ---------- Daq ---------- ---------- ---------- ---------- ---------- Dap ---------- ---------- ---------- ---------- ---------- Daa ---------- ---------- ---------- ---------- ---------- Dae ---------- ---------- ---------- ---------- ---------- Dan ---------- ---------- ---------- ---------- ---------- L1orl ...g...... .......t.. ......g... .......... ...t...... Musmht ---------- ---------- ---------- ---------- ---------- Dad ---------- ---------- ---------- ---------- ---------- Af081111 ...g...... .......t.. ......g... .......... ...t...... Af081109 ...g...... .......t.. ......g... .......... ...t...... L1spa ...g...... .......t.. ......g... .......... ...t...... Tfnode1 ...g...... .......t.. ......g... .......... ...t...... [ 4400 ' ' ' ' ] L1mdA2 CAACTCATTT TATGAAGCCA CTATTACTCT GATACCTAAA CCACAGAAAG Dat ---------- ---------- ---------- ---------- ---------- Af081112 .......... .......... .......... .......... .......... Af081107 .......... .......... .......... .......... .......... Ac5938b .......... .......... .......... .......... .......... Tfnode2 .......... .......... .......... .......... .......... Ac4405lr ---------- ---------- ---------- ---------- ---------- Af081113 .......... .......... .......... .......... .......... Af081106 .......... .......... .......... .......... .......... D2 ---------- ---------- ---------- ---------- ---------- D3 ---------- ---------- ---------- ---------- ---------- L1md4 ---------- ---------- ---------- ---------- ---------- Dab ---------- ---------- ---------- ---------- ---------- Dar ---------- ---------- ---------- ---------- ---------- Daq ---------- ---------- ---------- ---------- ---------- Dap ---------- ---------- ---------- ---------- ---------- Daa ---------- ---------- ---------- ---------- ---------- Dae ---------- ---------- ---------- ---------- ---------- Dan ---------- ---------- ---------- ---------- ---------- L1orl .......... .......... .......... .......... .......... Musmht ---------- ---------- ---------- ---------- ---------- Dad ---------- ---------- ---------- ---------- ---------- Af081111 .......... .......... .......... .......... .......... Af081109 .......... .......... .......... .......... .......... L1spa .......... .......... .......... .......... .......... Tfnode1 .......... .......... .......... .......... .......... [ 4450 ' ' ' ' ] L1mdA2 ATCCAACAAA GATAGAGAAC TTCAGACCAA TTTCTCTTAT GAATATCGAT Dat ---------- ---------- ---------- ---------- ---------- Af081112 .......... .......... .......... .......... ...c...... Af081107 .......... .......... .......... .......... ...c...... Ac5938b .......... .......... .......... .......... ...c...... Tfnode2 .......... .......... .......... .......... ...c...... Ac4405lr ---------- ---------- ---------- ---------- ---------- Af081113 .......... .......... .......... .......... ...c...... Af081106 .......... .......... .......... .......... ...c...... D2 ---------- ---------- ---------- ---------- ---------- D3 ---------- ---------- ---------- ---------- ---------- L1md4 ---------- ---------- ---------- ---------- ---------- Dab ---------- ---------- ---------- ---------- ---------- Dar ---------- ---------- ---------- ---------- ---------- Daq ---------- ---------- ---------- ---------- ---------- Dap ---------- ---------- ---------- ---------- ---------- Daa ---------- ---------- ---------- ---------- ---------- Dae ---------- ---------- ---------- ---------- ---------- Dan ---------- ---------- ---------- ---------- ---------- L1orl .......... .......... .......... .......... ...c...... Musmht ---------- ---------- ---------- ---------- ---------- Dad ---------- ---------- ---------- ---------- ---------- Af081111 .......... .......... .......... .......... ...c...... Af081109 .......... .......... .......... .......... ...c...... L1spa .......... .......... .......... .......... ...c...... Tfnode1 .......... .......... .......... .......... ...c...... [ 4500 ' ' ' ' ] L1mdA2 GCAAAAATCC TCAATAAAAT TCTCGCTAAC CGAATCCAAG AACACATTAA Dat ---------- ---------- ---------- ---------- ---------- Af081112 .......... .t........ .......... .......... .......... Af081107 .......... .t........ .......... .......... .......... Ac5938b .......... .t........ .......... .......... .......... Tfnode2 .......... .t........ .......... .......... .......... Ac4405lr ---------- ---------- ---------- ---------- ---------- Af081113 .......... .t........ .......... .......... .......... Af081106 .......... .t........ .......... .......... .......... D2 ---------- ---------- ---------- ---------- ---------- D3 ---------- ---------- ---------- ---------- ---------- L1md4 ---------- ---------- ---------- ---------- ---------- Dab ---------- ---------- ---------- ---------- ---------- Dar ---------- ---------- ---------- ---------- ---------- Daq ---------- ---------- ---------- ---------- ---------- Dap ---------- ---------- ---------- ---------- ---------- Daa ---------- ---------- ---------- ---------- ---------- Dae ---------- ---------- ---------- ---------- ---------- Dan ---------- ---------- ---------- ---------- ---------- L1orl .......... .t........ .......... .......... .......... Musmht ---------- ---------- ---------- ---------- ---------- Dad ---------- ---------- ---------- ---------- ---------- Af081111 ........t. .t........ .......... .......... .......... Af081109 .......... .t........ .......... .......... .......... L1spa .......... .t........ .......... .......... .......... Tfnode1 ........t. .t........ .......... .......... .......... [ 4550 ' ' ' ' ] L1mdA2 AGCAATCATC CATCCTGACC AAGTAGGTTT TATTCCAGGG ATGCAGGGAT Dat ---------- ---------- ---------- ---------- ---------- Af081112 .......... .......... .......... .......... .......... Af081107 .......... .......... .......... .......... .......... Ac5938b .......... .......... .......... .......... .......... Tfnode2 .......... .......... .......... .......... .......... Ac4405lr ---------- ---------- ---------- ---------- ---------- Af081113 .......... .......... .......... .......... .......... Af081106 .......... .......... .......... .......... .......... D2 ---------- ---------- ---------- ---------- ---------- D3 ---------- ---------- ---------- ---------- ---------- L1md4 ---------- ---------- ---------- ---------- ---------- Dab ---------- ---------- ---------- ---------- ---------- Dar ---------- ---------- ---------- ---------- ---------- Daq ---------- ---------- ---------- ---------- ---------- Dap ---------- ---------- ---------- ---------- ---------- Daa ---------- ---------- ---------- ---------- ---------- Dae ---------- ---------- ---------- ---------- ---------- Dan ---------- ---------- ---------- ---------- ---------- L1orl .......... .......... .......... .......... .......... Musmht ---------- ---------- ---------- ---------- ---------- Dad ---------- ---------- ---------- ---------- ---------- Af081111 .......... .......... .......... .......... .......... Af081109 .......... .......... .......... .......... .......... L1spa .......... .......... .......... .......... .......... Tfnode1 .......... .......... .......... .......... .......... [ 4600 ' ' ' ' ] L1mdA2 GGTTTAATAT ACGAAAATCC ATCAATGTAA TCCATTATAT AAACAAACTC Dat ---------- ---------- ---------- ---------- ---------- Af081112 .......... .......... .......... .......... .......... Af081107 .......... .......... .......... .......... .......... Ac5938b .......... .......... .......... .......... .......... Tfnode2 .......... .......... .......... .......... .......... Ac4405lr ---------- ---------- ---------- ---------- ---------- Af081113 .......... .......... .......... .......... .......... Af081106 .......... .......... .......... .......... .......... D2 ---------- ---------- ---------- ---------- ---------- D3 ---------- ---------- ---------- ---------- ---------- L1md4 ---------- ---------- ---------- ---------- ---------- Dab ---------- ---------- ---------- ---------- ---------- Dar ---------- ---------- ---------- ---------- ---------- Daq ---------- ---------- ---------- ---------- ---------- Dap ---------- ---------- ---------- ---------- ---------- Daa ---------- ---------- ---------- ---------- ---------- Dae ---------- ---------- ---------- ---------- ---------- Dan ---------- ---------- ---------- ---------- ---------- L1orl .......... .......... .......... .......... .......... Musmht ---------- ---------- ---------- ---------- ---------- Dad ---------- ---------- ---------- ---------- ---------- Af081111 .......... .......... .......... .......... .......... Af081109 .......... .......... .......... .......... .......... L1spa .......... .......... .......... .......... .......... Tfnode1 .......... .......... .......... .......... .......... [ 4650 ' ' ' ' ] L1mdA2 AAAGACAAAA ACCACATGAT CATCTCGTTA GATGCAGAAA AAGCATTTGA Dat ---------- ---------- ---------- ---------- ---------- Af081112 .......... .......... .......... .......... .......... Af081107 .......... .......... .......... .......... .......... Ac5938b .......... .......... .......... .......... .......... Tfnode2 .......... .......... .......... .......... .......... Ac4405lr ---------- ---------- ---------- ---------- ---------- Af081113 .......... .......... .......... .......... .......... Af081106 .......... .......... .......... .......... .......... D2 ---------- ---------- ---------- ---------- ---------- D3 ---------- ---------- ---------- ---------- ---------- L1md4 ---------- ---------- ---------- ---------- ---------- Dab ---------- ---------- ---------- ---------- ---------- Dar ---------- ---------- ---------- ---------- ---------- Daq ---------- ---------- ---------- ---------- ---------- Dap ---------- ---------- ---------- ---------- ---------- Daa ---------- ---------- ---------- ---------- ---------- Dae ---------- ---------- ---------- ---------- ---------- Dan ---------- ---------- ---------- ---------- ---------- L1orl .......... .......... .......... .......... .......... Musmht ---------- ---------- ---------- ---------- ---------- Dad ---------- ---------- ---------- ---------- ---------- Af081111 .......... .......... .......... .......... .......... Af081109 .......... .......... .......... .......... .......... L1spa .......... .......... .......... .......... .......... Tfnode1 .......... .......... .......... .......... .......... [ 4700 ' ' ' ' ] L1mdA2 CAAGATCCAA CACCCATTCA TGATAAAAGT TTTGGAAAGA TCAGGAATTC Dat ---------- ---------- ---------- ---------- ---------- Af081112 .......... .......... .......... .c........ .......... Af081107 .......... .......... .......... .c........ .......... Ac5938b .......... .......... .......... .c........ .......... Tfnode2 .......... .......... .......... .c........ .......... Ac4405lr ---------- ---------- ---------- ---------- ---------- Af081113 .......... .......... .......... .c........ .......... Af081106 .......... .......... .......... .c........ .......... D2 ---------- ---------- ---------- ---------- ---------- D3 ---------- ---------- ---------- ---------- ---------- L1md4 ---------- ---------- ---------- ---------- ---------- Dab ---------- ---------- ---------- ---------- ---------- Dar ---------- ---------- ---------- ---------- ---------- Daq ---------- ---------- ---------- ---------- ---------- Dap ---------- ---------- ---------- ---------- ---------- Daa ---------- ---------- ---------- ---------- ---------- Dae ---------- ---------- ---------- ---------- ---------- Dan ---------- ---------- ---------- ---------- ---------- L1orl .......... .......... .......... .c........ .......... Musmht ---------- ---------- ---------- ---------- ---------- Dad ---------- ---------- ---------- ---------- ---------- Af081111 .......... .......... .......... .c........ .......... Af081109 .......... .......... .......... .c........ .......... L1spa .......... .......... .......... .c........ .......... Tfnode1 .......... .......... .......... .c........ .......... [ 4750 ' ' ' ' ] L1mdA2 AAGGCCCATA CCTAAACATG ATAAAAGCAA TCTACAGCAA ACCAGTAGCC Dat ---------- ---------- ---------- ---------- ---------- Af081112 ......a... .......... .......... .......... .......... Af081107 ......a... .......... .......... .......... .......... Ac5938b ......a... .......... .......... .......... .......... Tfnode2 ......a... .......... .......... .......... .......... Ac4405lr ---------- ---------- ---------- ---------- ---------- Af081113 ......a... .......... .......... .......... .......... Af081106 ......a... .......... .......... .......... .......... D2 ---------- ---------- ---------- ---------- ---------- D3 ---------- ---------- ---------- ---------- ---------- L1md4 ---------- ---------- ---------- ---------- ---------- Dab ---------- ---------- ---------- ---------- ---------- Dar ---------- ---------- ---------- ---------- ---------- Daq ---------- ---------- ---------- ---------- ---------- Dap ---------- ---------- ---------- ---------- ---------- Daa ---------- ---------- ---------- ---------- ---------- Dae ---------- ---------- ---------- ---------- ---------- Dan ---------- ---------- ---------- ---------- ---------- L1orl ......a... .......... .......... .......... .......... Musmht ---------- ---------- ---------- ---------- ---------- Dad ---------- ---------- ---------- ---------- ---------- Af081111 ......a... .......... .......... .......... .......... Af081109 ......a... .......... .......... .......... .......... L1spa ......a... .......... .......... .......... .......... Tfnode1 ......a... .......... .......... .......... .......... [ 4800 ' ' ' ' ] L1mdA2 AACATCAAAG TAAATGGAGA GAAGCTGGAA GCAATCCCAC TAAAATCAGG Dat ---------- ---------- ---------- ---------- ---------- Af081112 .......... .......... .......... .......... .......... Af081107 .......... .......... .......... .......... .......... Ac5938b .......... .......... .......... .......... .......... Tfnode2 .......... .......... .......... .......... .......... Ac4405lr ---------- ---------- ---------- ---------- ---------- Af081113 .......... .......... .......... .......... .......... Af081106 .......... .......... .......... .......... .......... D2 ---------- ---------- ---------- ---------- ---------- D3 ---------- ---------- ---------- ---------- ---------- L1md4 ---------- ---------- ---------- ---------- ---------- Dab ---------- ---------- ---------- ---------- ---------- Dar ---------- ---------- ---------- ---------- ---------- Daq ---------- ---------- ---------- ---------- ---------- Dap ---------- ---------- ---------- ---------- ---------- Daa ---------- ---------- ---------- ---------- ---------- Dae ---------- ---------- ---------- ---------- ---------- Dan ---------- ---------- ---------- ---------- ---------- L1orl .......... .......... .......... .......... .......... Musmht ---------- ---------- ---------- ---------- ---------- Dad ---------- ---------- ---------- ---------- ---------- Af081111 .......... .......... .......... .......... .......... Af081109 .......... .......... .......... .......... .......... L1spa .......... .......... .......... .......... .......... Tfnode1 .......... .......... .......... .......... .......... [ 4850 ' ' ' ' ] L1mdA2 GACTAGACAA GGCTGCCCAC TTTCTCCCTA CCTTTTCAAC ATAGTACTTG Dat ---------- ---------- ---------- ---------- ---------- Af081112 .......... .......... .......... .......... .......... Af081107 .......... .......... .......... .......... .......... Ac5938b .......... .......... .......... .......... .......... Tfnode2 .......... .......... .......... .......... .......... Ac4405lr ---------- ---------- ---------- ---------- ---------- Af081113 .......... .......... .........c .......... .......... Af081106 .......... .......... .......... .......... .......... D2 ---------- ---------- ---------- ---------- ---------- D3 ---------- ---------- ---------- ---------- ---------- L1md4 ---------- ---------- ---------- ---------- ---------- Dab ---------- ---------- ---------- ---------- ---------- Dar ---------- ---------- ---------- ---------- ---------- Daq ---------- ---------- ---------- ---------- ---------- Dap ---------- ---------- ---------- ---------- ---------- Daa ---------- ---------- ---------- ---------- ---------- Dae ---------- ---------- ---------- ---------- ---------- Dan ---------- ---------- ---------- ---------- ---------- L1orl .......... .......... .......... .......... .......... Musmht ---------- ---------- ---------- ---------- ---------- Dad ---------- ---------- ---------- ---------- ---------- Af081111 .......... .......... .......... .......... .......... Af081109 .......... .......... .......... .......... .......... L1spa .......... .......... .......... .......... .......... Tfnode1 .......... .......... .......... .......... .......... [ 4900 ' ' ' ' ] L1mdA2 AAGTATTAGC CAGAGCAATT CGACAACAAA AGGAGATCAA GGGGATACAA Dat ---------- ---------- ---------- ---------- ---------- Af081112 .......... .......... .......... .......... .......... Af081107 .......... .......... .......... .......... .......... Ac5938b .......... .......... .......... .......... .......... Tfnode2 .......... .......... .......... .......... .......... Ac4405lr ---------- ---------- ---------- ---------- ---------- Af081113 .......... .......... .......... .......... .......... Af081106 .......... .......... .......... .......... .......... D2 ---------- ---------- ---------- ---------- ---------- D3 ---------- ---------- ---------- ---------- ---------- L1md4 ---------- ---------- ---------- ---------- ---------- Dab ---------- ---------- ---------- ---------- ---------- Dar ---------- ---------- ---------- ---------- ---------- Daq ---------- ---------- ---------- ---------- ---------- Dap ---------- ---------- ---------- ---------- ---------- Daa ---------- ---------- ---------- ---------- ---------- Dae ---------- ---------- ---------- ---------- ---------- Dan ---------- ---------- ---------- ---------- ---------- L1orl .......... .......... .......... .......... .......... Musmht ---------- ---------- ---------- ---------- ---------- Dad ---------- ---------- ---------- ---------- ---------- Af081111 .......... .......... .......... .......... .......... Af081109 .......... .......... .......... .......... .......... L1spa .......... .......... .......... .......... .......... Tfnode1 .......... .......... .......... .......... .......... [ 4950 ' ' ' ' ] L1mdA2 ATTGGAAAAG AGGAAGTCAA AATATCACTT CTTGCAGATG ATATGATAGT Dat ---------- ---------- ---------- ---------- ---------- Af081112 .......... .......... .......... t......... .......... Af081107 .......... .......... .......... t......... .......... Ac5938b .......... .......... .......... t......... .......... Tfnode2 .......... .......... .......... t......... .......... Ac4405lr ---------- ---------- ---------- ---------- ---------- Af081113 .......... .......... .......... t......... .......... Af081106 .......... .......... .......... t......... .......... D2 ---------- ---------- ---------- ---------- ---------- D3 ---------- ---------- ---------- ---------- ---------- L1md4 ---------- ---------- ---------- ---------- ---------- Dab ---------- ---------- ---------- ---------- ---------- Dar ---------- ---------- ---------- ---------- ---------- Daq ---------- ---------- ---------- ---------- ---------- Dap ---------- ---------- ---------- ---------- ---------- Daa ---------- ---------- ---------- ---------- ---------- Dae ---------- ---------- ---------- ---------- ---------- Dan ---------- ---------- ---------- ---------- ---------- L1orl .......... .......... .......... t......... .......... Musmht ---------- ---------- ---------- ---------- ---------- Dad ---------- ---------- ---------- ---------- ---------- Af081111 .......... .......... .......... t......... .......... Af081109 .......... .......... .......... t......... .......... L1spa .......... .......... .......... t......... .......... Tfnode1 .......... .......... .......... t......... .......... [ 5000 ' ' ' ' ] L1mdA2 ATATATAAGT GACCCTAAAA ATTCTACCAG AGAACTCCTA AACCTGATAA Dat ---------- ---------- ---------- ---------- ---------- Af081112 .......... .......... ....c.a... .......... .......... Af081107 .......... .......... ....c.a... .......... .......... Ac5938b .......... .......... ....c.a... .......... .......... Tfnode2 .......... .......... ....c.a... .......... .......... Ac4405lr ---------- ---------- ---------- ---------- ---------- Af081113 .......... .......... ....c.a... .......... .......... Af081106 .......... .......... ....c.a... .......... .......... D2 ---------- ---------- ---------- ---------- ---------- D3 ---------- ---------- ---------- ---------- ---------- L1md4 ---------- ---------- ---------- ---------- ---------- Dab ---------- ---------- ---------- ---------- ---------- Dar ---------- ---------- ---------- ---------- ---------- Daq ---------- ---------- ---------- ---------- ---------- Dap ---------- ---------- ---------- ---------- ---------- Daa ---------- ---------- ---------- ---------- ---------- Dae ---------- ---------- ---------- ---------- ---------- Dan ---------- ---------- ---------- ---------- ---------- L1orl .......... .......... ....c.a... .......... .......... Musmht ---------- ---------- ---------- ---------- ---------- Dad ---------- ---------- ---------- ---------- ---------- Af081111 .......... .......... ....c.a... .......... .......... Af081109 .......... .......... ....c.a... .......... .......... L1spa .......... .......... ....c.a... .......... .......... Tfnode1 .......... .......... ....c.a... .......... .......... [ 5050 ' ' ' ' ] L1mdA2 ACAGCTTCGG TGAAGTAGTT GGATATAAAA TAAACTCAAA CAAGTCAATG Dat ---------- ---------- ---------- ---------- ---------- Af081112 .......... ........c. .......... .t........ .......... Af081107 .......... ........c. .......... .t........ .......... Ac5938b .......... ........c. .......... .t........ .......... Tfnode2 .......... ........c. .......... .t........ .......... Ac4405lr ---------- ---------- ---------- ---------- ---------- Af081113 .......... ........c. .......... .t........ .......... Af081106 .......... ........c. .......... .t........ .......... D2 ---------- ---------- ---------- ---------- ---------- D3 ---------- ---------- ---------- ---------- ---------- L1md4 ---------- ---------- ---------- ---------- ---------- Dab ---------- ---------- ---------- ---------- ---------- Dar ---------- ---------- ---------- ---------- ---------- Daq ---------- ---------- ---------- ---------- ---------- Dap ---------- ---------- ---------- ---------- ---------- Daa ---------- ---------- ---------- ---------- ---------- Dae ---------- ---------- ---------- ---------- ---------- Dan ---------- ---------- ---------- ---------- ---------- L1orl .......... ........c. .......... .t........ .......... Musmht ---------- ---------- ---------- ---------- ---------- Dad ---------- ---------- ---------- ---------- ---------- Af081111 .......... ........c. .......... .t........ .......... Af081109 .......... ........c. .......... .t........ .......... L1spa .......... ........c. .......... .t........ .......... Tfnode1 .......... ........c. .......... .t........ .......... [ 5100 ' ' ' ' ] L1mdA2 GCCTTTCTCT ATACAAAGAA TAAACAGGCT GAGAAAGAAA TTAGGGAAAC Dat ---------- ---------- ---------- ---------- ---------- Af081112 .......... .c........ .......... .......... .......... Af081107 .......... .c........ .......... .......... .......... Ac5938b .......... .c........ .......... .......... .......... Tfnode2 .......... .c........ .......... .......... .......... Ac4405lr ---------- ---------- ---------- ---------- ---------- Af081113 .......... .c........ .......... .......... .......... Af081106 .......... .c........ .......... .......... .......... D2 ---------- ---------- ---------- ---------- ---------- D3 ---------- ---------- ---------- ---------- ---------- L1md4 ---------- ---------- ---------- ---------- ---------- Dab ---------- ---------- ---------- ---------- ---------- Dar ---------- ---------- ---------- ---------- ---------- Daq ---------- ---------- ---------- ---------- ---------- Dap ---------- ---------- ---------- ---------- ---------- Daa ---------- ---------- ---------- ---------- ---------- Dae ---------- ---------- ---------- ---------- ---------- Dan ---------- ---------- ---------- ---------- ---------- L1orl .......... .c........ .........c .......... .......... Musmht ---------- ---------- ---------- ---------- ---------- Dad ---------- ---------- ---------- ---------- ---------- Af081111 .......... .c........ .......... .......... .......... Af081109 .......... .c........ .......... .......... .......... L1spa .......... .c........ .......... .......... .......... Tfnode1 .......... .c........ .......... .......... .......... [ 5150 ' ' ' ' ] L1mdA2 AACACCCTTC TCAATAGTCA CAAATAATAT AAAATATCTT GGCGTGACTC Dat ---------- ---------- ---------- ---------- ---------- Af081112 .......... .......c.. .......... .........c .......... Af081107 .......... .......c.. .......... .........c .......... Ac5938b .......... .......c.. .......... .........c ...a...... Tfnode2 .......... .......c.. .......... .........c .......... Ac4405lr ---------- ---------- ---------- ---------- ---------- Af081113 .......... .......c.. .......... .........c .......... Af081106 .......... .......c.. .......... .........c .......... D2 ---------- ---------- ---------- ---------- ---------- D3 ---------- ---------- ---------- ---------- ---------- L1md4 ---------- ---------- ---------- ---------- ---------- Dab ---------- ---------- ---------- ---------- ---------- Dar ---------- ---------- ---------- ---------- ---------- Daq ---------- ---------- ---------- ---------- ---------- Dap ---------- ---------- ---------- ---------- ---------- Daa ---------- ---------- ---------- ---------- ---------- Dae ---------- ---------- ---------- ---------- ---------- Dan ---------- ---------- ---------- ---------- ---------- L1orl .......... .......c.. .......... .........c .......... Musmht ---------- ---------- ---------- ---------- ---------- Dad ---------- ---------- ---------- ---------- ---------- Af081111 .......... .......c.. .......... .........c .......... Af081109 .......... .......c.. .......... .........c .......... L1spa .......... .......c.. .......... .........c .......... Tfnode1 .......... .......c.. .......... .........c .......... [ 5200 ' ' ' ' ] L1mdA2 TAACTAAGGA GGTGAAAGAT CTGTATGATA AAAACTTCAA ATCTCTGAAG Dat ---------- ---------- ---------- ---------- ---------- Af081112 .......... a......... .......... .......... g..c...... Af081107 ....g..... a......... .......... .......... g..c...... Ac5938b ....g..... a......... .......... .......... g..c...... Tfnode2 ....g..... a......... .......... .......... g..c...... Ac4405lr ---------- ---------- ---------- ---------- ---------- Af081113 ....g..... a......... .......... .......... g..c...... Af081106 ....g..... a......... .......... .......... g..c...... D2 ---------- ---------- ---------- ---------- ---------- D3 ---------- ---------- ---------- ---------- ---------- L1md4 ---------- ---------- ---------- ---------- ---------- Dab ---------- ---------- ---------- ---------- ---------- Dar ---------- ---------- ---------- ---------- ---------- Daq ---------- ---------- ---------- ---------- ---------- Dap ---------- ---------- ---------- ---------- ---------- Daa ---------- ---------- ---------- ---------- ---------- Dae ---------- ---------- ---------- ---------- ---------- Dan ---------- ---------- ---------- ---------- ---------- L1orl ....g..... a......... .......... .......... g..c...... Musmht ---------- ---------- ---------- ---------- ---------- Dad ---------- ---------- ---------- ---------- ---------- Af081111 ....g..... a......... .......... .......... g..c...... Af081109 ....g..... a......... .......... .......... g..c...... L1spa ....g..... a......... .......... .......... g..c...... Tfnode1 ....g..... a......... .......... .......... g..c...... [ 5250 ' ' ' ' ] L1mdA2 AAAGAAATTA AAGAAGATCT CAGAAGATGG AAAGATCTCC CATGCTCATG Dat ---------- ---------- ---------- ---------- ---------- Af081112 .......... .......... .......... .......... .......... Af081107 .......... .......... .......... .......... .......... Ac5938b .......... .......... .......... .......... .......... Tfnode2 .......... .......... .......... .......... .......... Ac4405lr ---------- ---------- ---------- ---------- ---------- Af081113 .......... .......... .......... .......... .......... Af081106 .......... .......... .......... .......... .......... D2 ---------- ---------- ---------- ---------- ---------- D3 ---------- ---------- ---------- ---------- ---------- L1md4 ---------- ---------- ---------- ---------- ---------- Dab ---------- ---------- ---------- ---------- ---------- Dar ---------- ---------- ---------- ---------- ---------- Daq ---------- ---------- ---------- ---------- ---------- Dap ---------- ---------- ---------- ---------- ---------- Daa ---------- ---------- ---------- ---------- ---------- Dae ---------- ---------- ---------- ---------- ---------- Dan ---------- ---------- ---------- ---------- ---------- L1orl .......... .......... .......... .......... .......... Musmht ---------- ---------- ---------- ---------- ---------- Dad ---------- ---------- ---------- ---------- ---------- Af081111 .......... .......... .......... .......... .......... Af081109 .......... .......... .......... .......... .......... L1spa .......... .......... .......... .......... .......... Tfnode1 .......... .......... .......... .......... .......... [ 5300 ' ' ' ' ] L1mdA2 GATTGGCAGG ATCAACATTG TAAAAATGGC TATCTTGCCA AAAGCAATCT Dat ---------- ---------- ---------- ---------- ---------- Af081112 .......... .c........ .......... .......... .......... Af081107 .......... .c........ .......... .......... .......... Ac5938b .......... .c........ .......... .......... .......... Tfnode2 .......... .c........ .......... .......... .......... Ac4405lr ---------- ---------- ---------- ---------- ---------- Af081113 .......... .c........ .......... .......... .......... Af081106 .......... .c........ .......... .......... .......... D2 ---------- ---------- ---------- ---------- ---------- D3 ---------- ---------- ---------- ---------- ---------- L1md4 ---------- ---------- ---....... .......... .......... Dab ---------- ---------- ---------- ---------- ---------- Dar ---------- ---------- ---------- ---------- ---------- Daq ---------- ---------- ---------- ---------- ---------- Dap ---------- ---------- ---------- ---------- ---------- Daa ---------- ---------- ---------- ---------- ---------- Dae ---------- ---------- ---------- ---------- ---------- Dan ---------- ---------- ---------- ---------- ---------- L1orl .......... .c........ .......... .......... .......... Musmht ---------- ---------- ---------- ---------- ---------- Dad ---------- ---------- ---------- ---------- ---------- Af081111 .......... .c........ .......... .......... .......... Af081109 .......... .c........ .......... .......... .......... L1spa .......... .c........ .......... .......... .......... Tfnode1 .......... .c........ .......... .......... .......... [ 5350 ' ' ' ' ] L1mdA2 ACAGATTCAA TGCAATCCCC ATCAAAATTC CAACTCAATT CTTCAACGAA Dat ---------- ---------- ---------- ---------- ---------- Af081112 .......... .......... ..t....... .......... .......... Af081107 .......... .......... .......... .......... .......... Ac5938b .......... .......... ..t....... .......... .......... Tfnode2 .......... .......... ..t....... .......... .......... Ac4405lr ---------- ---------- ---------- ---------- ---------- Af081113 .......... .......... ..t....... .......... .......... Af081106 .......... .......... ..t....... .......... .......... D2 ---------- ---------- ---------- ---------- ---------- D3 ---------- ---------- ---------- ---------- ---------- L1md4 .......... .......... ..t....... .......... .......... Dab ---------- ---------- ---------- ---------- ---------- Dar ---------- ---------- ---------- ---------- ---------- Daq ---------- ---------- ---------- ---------- ---------- Dap ---------- ---------- ---------- ---------- ---------- Daa ---------- ---------- ---------- ---------- ---------- Dae ---------- ---------- ---------- ---------- ---------- Dan ---------- ---------- ---------- ---------- ---------- L1orl .......... .......... ..t....... .......... .......... Musmht ---------- ---------- ---------- ---------- ---------- Dad ---------- ---------- ---------- ---------- ---------- Af081111 .......... .......... ..t....... .......... .......... Af081109 .......... .......... ..t....... .......... .......... L1spa .......... .......... ..t....... .......... .......... Tfnode1 .......... .......... ..t....... .......... .......... [ 5400 ' ' ' ' ] L1mdA2 TTGGAAGGAG CAATTTGCAA ATTTGTCTGG AATAACAAAA AACCTAGGAT Dat ---------- ---------- ---------- ---------- ---------- Af081112 ..a....... .......... ...ca..... .......... ....g..... Af081107 ..a....... .......... ...ca..... .......... .......... Ac5938b ..a....... .......... ...ca..... .......... ....g..... Tfnode2 ..a....... .......... ...ca..... .......... ....g..... Ac4405lr ---------- ---------- ---------- ---------- ---------- Af081113 ..a....... .......... ...ca..... .......... ....g..... Af081106 ..a....... .......... ...ca..... .......... ....g..... D2 ---------- ---------- ---------- ---------- ---------- D3 ---------- ---------- ---------- ---------- ---------- L1md4 ..a....... .......... ...ca..... .......... ....g..... Dab ---------- ---------- ---------- ---------- ---------- Dar ---------- ---------- ---------- ---------- ---------- Daq ---------- ---------- ---------- ---------- ---------- Dap ---------- ---------- ---------- ---------- ---------- Daa ---------- ---------- ---------- ---------- ---------- Dae ---------- ---------- ---------- ---------- ---------- Dan ---------- ---------- ---------- ---------- ---------- L1orl ..a....... .......... ...ca..... .......... ....g..... Musmht ---------- ---------- ---------- ---------- ---------- Dad ---------- ---------- ---------- ---------- ---------- Af081111 ..a....... .......... ...ca..... .......... ....g..... Af081109 ..a....... .......... ...ca..... .......... ....g..... L1spa ..a....... .......... ...ca..... .......... ....g..... Tfnode1 ..a....... .......... ...ca..... .......... ....g..... [ 5450 ' ' ' ' ] L1mdA2 AGCAAAAAGT CTTCTCAAGG ATAAAAGAAC TTCTGGCGGA ATCACCATGC Dat ---------- ---------- ---------- ---------- ---------- Af081112 ........c. .......... .......... c.....t... .......... Af081107 ........c. .......... .......... c.....t... .......... Ac5938b ........c. .......... .......... c.....t... .......... Tfnode2 ........c. .......... .......... c.....t... .......... Ac4405lr ---------- ---------- ---------- ---------- ---------- Af081113 ........c. .......... .......... c.....t... .......... Af081106 ........c. .......... .......... c.....t... .......... D2 ---------- ---------- ---------- ---------- ---------- D3 ---------- ---------- ---------- ---------- ---------- L1md4 ........c. .......... .......... c.....t... .......... Dab ---------- ---------- ---------- ---------- ---------- Dar ---------- ---------- ---------- ---------- ---------- Daq ---------- ---------- ---------- ---------- ---------- Dap ---------- ---------- ---------- ---------- ---------- Daa ---------- ---------- ---------- ---------- ---------- Dae ---------- ---------- ---------- ---------- ---------- Dan ---------- ---------- ---------- ---------- ---------- L1orl ........c. .......... .......... c.....t... .......... Musmht ---------- ---------- ---------- ---------- ---------- Dad ---------- ---------- ---------- ---------- ---------- Af081111 ........c. .......... .......... c.....t... .......... Af081109 ........c. .......... .......... c.....t... .......... L1spa ........c. .......... .......... c.....t... .......... Tfnode1 ........c. .......... .......... c.....t... .......... [ 5500 ' ' ' ' ] L1mdA2 CAGACCTAAA GCTTTACTAC AGAGCAATTG TGATAAAAAC TGCATGGTAC Dat ---------- ---------- ---------- ---------- ---------- Af081112 .t........ .......... .......... .......... .......... Af081107 .t........ .......... .......... .......... .......... Ac5938b .t........ .......... .......... .......... .......... Tfnode2 .t........ .......... .......... .......... .......... Ac4405lr ---------- ---------- ---------- ---------- ---------- Af081113 .t........ .......... .......... .......... .......... Af081106 .t........ .......... ....t..... .......... .......... D2 ---------- ---------- ---------- ---------- ---------- D3 ---------- ---------- ---------- ---------- ---------- L1md4 .t........ .......... .......... .......... .......... Dab ---------- ---------- ---------- ---------- ---------- Dar ---------- ---------- ---------- ---------- ---------- Daq ---------- ---------- ---------- ---------- ---------- Dap ---------- ---------- ---------- ---------- ---------- Daa ---------- ---------- ---------- ---------- ---------- Dae ---------- ---------- ---------- ---------- ---------- Dan ---------- ---------- ---------- ---------- ---------- L1orl .t........ .......... .......... .......... .......... Musmht --------.. .......... .......... .......... .......... Dad ---------- ---------- ---------- ---------- ---------- Af081111 .t........ .......... .......... .......... .......... Af081109 .t........ .......... .......... .......... .......... L1spa .t........ .......... .......... .......... .......... Tfnode1 .t........ .......... .......... .......... .......... [ 5550 ' ' ' ' ] L1mdA2 TGGTATAGAG ACAGACAAGT AGACCAATGG AATAGAATTG AAGATCCAGA Dat ---------- ---------- ---------- ---------- ---------- Af081112 .......... .......... g......... .......... ....c..... Af081107 .......... .......... g......... .......... ....c..... Ac5938b .......... .......... g......... .......... ....c..... Tfnode2 .......... .......... g......... .......... ....c..... Ac4405lr ---------- ---------- ---------- ---------- ---------- Af081113 .......... .......... g......... .......... ....c..... Af081106 .......... .......... g......... .......... ....c..... D2 ---------- ---------- ---------- ---------- ---------- D3 ---------- ---------- ---------- ---------- ---------- L1md4 .......... .......... g......... .......... ....c..... Dab ---------- ---------- ---------- ---------- ---------- Dar ---------- ---------- ---------- ---------- ---------- Daq ---------- ---------- ---------- ---------- ---------- Dap ---------- ---------- ---------- ---------- ---------- Daa ---------- ---------- ---------- ---------- ---------- Dae ---------- ---------- ---------- ---------- ---------- Dan ---------- ---------- ---------- ---------- ---------- L1orl .......... .......... g......... .......... ....c..... Musmht .......... .......... g......... .......... ....c..... Dad ---------- ---------- ---------- ---------- ---------- Af081111 .......... .......... g......... .......... ....c..... Af081109 .......... .......... .......... .......... ....c..... L1spa .......... .......... .......... .......... ....c..... Tfnode1 .......... .......... g......... .......... ....c..... [ 5600 ' ' ' ' ] L1mdA2 AATGAACCCA CACACCTATG GTCACTTGAT CTTCGACAAG GGAGCTAAAA Dat ---------- ---------- ---------- ---------- ---------- Af081112 .......... .......... .......... .......... .....c.... Af081107 .......... .......... .......... .......... .....c.... Ac5938b .......... .......... .......... .......... .....c.... Tfnode2 .......... .......... .......... .......... .....c.... Ac4405lr ---------- ---------- ---------- ---------- ---------- Af081113 .......... .......... .......... .......... .....c.... Af081106 .......... .......... .......... .......... .....c.... D2 ---------- ---------- ---------- ---------- ---------- D3 ---------- ---------- ---------- ---------- ---------- L1md4 .......... .......... .......... .......... .....c.... Dab ---------- ---------- ---------- ---------- ---------- Dar ---------- ---------- ---------- ---------- ---------- Daq ---------- ---------- ---------- ---------- ---------- Dap ---------- ---------- ---------- ---------- ---------- Daa ---------- ---------- ---------- ---------- ---------- Dae ---------- ---------- ---------- ---------- ---------- Dan ---------- ---------- ---------- ---------- ---------- L1orl .......... .......... .......... .......... .....c.... Musmht .......... .......... .......... .......... .....c.... Dad ---------- ---------- ---------- ---------- ---------- Af081111 .......... .......... .......... .......... .....c.... Af081109 .......... .......... .......... .......... .....c.... L1spa .......... .......... .......... .......... .....c.... Tfnode1 .......... .......... .......... .......... .....c.... [ 5650 ' ' ' ' ] L1mdA2 CCATCCAGTG GAAGAAAGAC AGCATTTTCA ACAATTGGTG CTGGCACAAC Dat ---------- ---------- ---------- ---------- ---------- Af081112 .......... .......... .......... .......... .......... Af081107 .......... .......... .......... .......... .......... Ac5938b .......... .......... .......... .......... .......... Tfnode2 .......... .......... .......... .......... .......... Ac4405lr ---------- ---------- ---------- ---------- ---------- Af081113 .......... .......... .......... .......... .......... Af081106 .......... .......... .......... .......... .......... D2 ---------- ---------- ---------- ---------- ---------- D3 ---------- ---------- ---------- ---------- ---------- L1md4 .......... .......... .......... .......... .......... Dab ---------- ---------- ---------- ---------- ---------- Dar ---------- ---------- ---------- ---------- ---------- Daq ---------- ---------- ---------- ---------- ---------- Dap ---------- ---------- ---------- ---------- ---------- Daa ---------- ---------- ---------- ---------- ---------- Dae ---------- ---------- ---------- ---------- ---------- Dan ---------- ---------- ---------- ---------- ---------- L1orl .......... .......... .......... .......... .......... Musmht .......... .......... .......... .......... .......... Dad ---------- ---------- ---------- ---------- ---------- Af081111 .......... .......... .......... .......... .......... Af081109 .......... .......... .......... .......... .......... L1spa .......... .......... .......... .......... .......... Tfnode1 .......... .......... .......... .......... .......... [ 5700 ' ' ' ' ] L1mdA2 TGGTTGTTAT CGTGTAGAAG AATGCGAATC GATCCATACT TATCTCCTTG Dat ---------- ---------- ---------- ---------- ---------- Af081112 .......... .a........ .......... .......... .......... Af081107 .......... .a........ .......... .......... .......... Ac5938b .......... .a........ .......... .......... .......... Tfnode2 .......... .a........ .......... .......... .......... Ac4405lr ---------- --........ .......... .......... .......... Af081113 .......... .a........ .......... .......... .......... Af081106 .......... .a........ .......... .......... .......... D2 ---------- ---------- ---------- ---------- ---------- D3 ---------- ---------- ---------- ---------- ---------- L1md4 .......... .a........ ....t..... .......... .......... Dab ---------- ---------- ---------- ---------- ---------- Dar ---------- ---------- ---------- ---------- ---------- Daq ---------- ---------- ---------- ---------- ---------- Dap ---------- ---------- ---------- ---------- ---------- Daa ---------- ---------- ---------- ---------- ---------- Dae ---------- ---------- ---------- ---------- ---------- Dan ---------- ---------- ---------- ---------- ---------- L1orl .......... .a........ .......... .......... .......... Musmht .......... .a........ .......... .......... .......... Dad ---------- ---------- ---------- ---------- ---------- Af081111 .......... .a........ .......... .......... .......... Af081109 .......... .a........ .......... .......... .......... L1spa .......... .a........ .......... .......... .......... Tfnode1 .......... .a........ .......... .......... .......... [ 5750 ' ' ' ' ] L1mdA2 TACTAAGGTC AAATCTAAGT GGATCAAGGA ACTTCACATA AAACCAGAGA Dat ---------- ---------- ---------- ---------- ---------- Af081112 .......... .......... .......... .......... .......... Af081107 .......... .......... .......... .......... .......... Ac5938b .......... .......... .......... .......... .......... Tfnode2 .......... .......... .......... .......... .......... Ac4405lr .......... .......... .......... .......... .......... Af081113 .......... .......... .......... .......... .......... Af081106 .......... .......... .......... .......... .......... D2 ---------- ---------- ---------- ---------- ---------- D3 ---------- ---------- ---------- ---------- ---------- L1md4 .......... .......... .......... .......... .......... Dab ---------- ---------- ---------- ---------- ---------- Dar ---------- ---------- ---------- ---------- ---------- Daq ---------- ---------- ---------- ---------- ---------- Dap ---------- ---------- ---------- ---------- ---------- Daa ---------- ---------- ---------- ---------- ---------- Dae ---------- ---------- ---------- ---------- ---------- Dan ---------- ---------- ---------- ---------- ---------- L1orl .......... .......... .......... .......... .......... Musmht .......... .......... .......... .......... .......... Dad ---------- ---------- ---------- ---------- ---------- Af081111 .......... .......... .......... .......... .......... Af081109 .......... .......... .......... .......... .......... L1spa .......... .......... .......... .......... .......... Tfnode1 .......... .......... .......... .......... .......... [ 58000 ' ' ' ' ] L1mdA2 CACTGAAACT TATAGAGGAG AAAGTGGGGA AAAGCCTTGA AGATATGGGC Dat ---------- ---------- ---------- ---------- ---------- Af081112 .......... .......... .......... .......... .......... Af081107 .......... .......... .......... .......... .......... Ac5938b .......... .......... .......... .......... .......... Tfnode2 .......... .......... .......... .......... .......... Ac4405lr .......... .......... .......... .......... .......... Af081113 .......... .......... .......... .......... .......... Af081106 .......... .......... .......... .......... .......... D2 ---------- ---------- ---------- ---------- ---------- D3 ---------- ---------- ---------- ---------- ---------- L1md4 .......... .......... .......... .......... .......... Dab ---------- ---------- ---------- ---------- ---------- Dar ---------- ---------- ---------- ---------- ---------- Daq ---------- ---------- ---------- ---------- ---------- Dap ---------- ---------- ---------- ---------- ---------- Daa ---------- ---------- ---------- ---------- ---------- Dae ---------- ---------- ---------- ---------- ---------- Dan ---------- ---------- ---------- ---------- ---------- L1orl .......... .......... .......... .......... .......... Musmht .......... .......... .......... ......g.-- ---------- Dad ---------- ---------- ---------- ---------- ---------- Af081111 .......... .......... .......... .......... .......... Af081109 .......... .......... .......... ....t..... .......... L1spa .......... .......... .......... ....t..... .......... Tfnode1 .......... .......... .......... .......... .......... [ 5850 ' ' ' ' ] L1mdA2 ACAGGGGAAA AATTCCTGAA CAGAACAGCA ATGGCTTGTG CTGTAAGATC Dat ---------- ---------- ---------- ---------- ---------- Af081112 .......... .......... .......... .......... .......... Af081107 .......... .......... .......... .......... .......... Ac5938b .......... .......... .......... .......... .......... Tfnode2 .......... .......... .......... .......... .......... Ac4405lr .......... .......... .......... .......... .......... Af081113 .......... .......... .......... .......... .......... Af081106 .......... .......... .......... .......... .......... D2 ---------- ---------- ---------- ---------- ---------- D3 ---------- ---------- ---------- ---------- ---------- L1md4 .......... .......... .......... .......... .......... Dab ---------- ---------- ---------- ---------- ---------- Dar ---------- ---------- ---------- ---------- ---------- Daq ---------- ---------- ---------- ---------- ---------- Dap ---------- ---------- ---------- ---------- ---------- Daa ---------- ---------- ---------- ---------- ---------- Dae ---------- ---------- ---------- ---------- ---------- Dan ---------- ---------- ---------- ---------- ---------- L1orl .......... .......... .......... .......... .......... Musmht ---------- ---------- ---------- ---------- ---------- Dad ---------- ---------- ---------- ---------- ---------- Af081111 .......... .......... t......... .......... .......... Af081109 .......... .......... .......... .......... .......... L1spa .......... .......... .......... .......... .......... Tfnode1 .......... .......... .......... .......... .......... [ 5900 ' ' ' ' ] L1mdA2 GAGAATCGAC AAATGGGACC TAATGAAACT GCAAAGTTTC TGCAAGGCAA Dat ---------- ---------- ---------- ---------- ---------- Af081112 ......t... .......... .......... c......... .......... Af081107 ......t... .......... .......... c......... .......... Ac5938b ......t... .......... .......... c......... .......... Tfnode2 ......t... .......... .......... c......... .......... Ac4405lr ......t... .......... .......... c......... .......... Af081113 ......t... .......... .......... c......... .......... Af081106 ......t... .......... .......... c......... .......... D2 ---------- ---------- ---------- ---------- ---------- D3 ---------- ---------- ---------- ---------- ---------- L1md4 ......t... .......... .......... c......... .......... Dab ---------- ---------- ---------- ---------- ---------- Dar ---------- ---------- ---------- ---------- ---------- Daq ---------- ---------- ---------- ---------- ---------- Dap ---------- ---------- ---------- ---------- ---------- Daa ---------- ---------- ---------- ---------- ---------- Dae ---------- ---------- ---------- ---------- ---------- Dan ---------- ---------- ---------- ---------- ---------- L1orl ......t... .......... .......... c......... .......... Musmht ---------- ---------- ---------- ---------- ---------- Dad ---------- ---------- ---------- ---------- ---------- Af081111 ......t... .......... .......... c......... .......... Af081109 ......t... .......... .......... c......... .......... L1spa ......t... .......... .......... c......... .......... Tfnode1 ......t... .......... .......... c......... .......... [ 5950 ' ' ' ' ] L1mdA2 AAGACACTGT CAATAAGACA AAAAGACCAC CAACAGATTG GGAAAGGATC Dat ---------- ---------- ---------- ---------- ---------- Af081112 .......... .t........ .......... .......c.. .......... Af081107 .......... .t........ .......... .......c.. .......... Ac5938b .......... .t........ .......... .......c.. .......... Tfnode2 .......... .t........ .......... .......c.. .......... Ac4405lr .......... .t........ .......... .......c.. .......... Af081113 .......... .t........ .......... .......c.. .......... Af081106 .......... .t........ .......... .......c.. .......... D2 ---------- ---------- ---------- ---------- ---------- D3 ---------- ---------- ---------- ---------- ---------- L1md4 .......... .t........ .......... .......c.. .......... Dab ---------- ---------- ---------- ---------- ---------- Dar ---------- ---------- ---------- ---------- ---------- Daq ---------- ---------- ---------- ---------- ---------- Dap ---------- ---------- ---------- ---------- ---------- Daa ---------- ---------- ---------- ---------- ---------- Dae ---------- ---------- ---------- ---------- ---------- Dan ---------- ---------- ---------- ---------- ---------- L1orl .......... .t........ .......... .......c.. .......... Musmht ---------- ---------- ---------- ---------- ---------- Dad ---------- ---------- ---------- ---------- ---------- Af081111 .......... .t........ .......... .......c.. .......... Af081109 .......... .t........ .......... .......c.. .......... L1spa .......... .t........ .......... .......c.. .......... Tfnode1 .......... .t........ .......... .......c.. .......... [ 6000 ' ' ' ' ] L1mdA2 TTTACCTATC CTAAATCAGA TAGGGGACTA ATATCCAACA TATATAAAGA Dat ---------- ---------- ---------- ---------- ---------- Af081112 .......... .......... .......... .......... .......... Af081107 .......... .......... .......... .......... .......... Ac5938b .......... .......... .......... .......... .......... Tfnode2 .......... .......... .......... .......... .......... Ac4405lr .......... .......... .......... .......... .......... Af081113 .......... .......... .......... .......... .......... Af081106 .......... .......... .......... .......... .......... D2 ---------- ---------- ---------- ---------- ---------- D3 ---------- ---------- ---------- ---------- ---------- L1md4 .......... .......... .......... .......... .......... Dab ---------- ---------- ---------- ---------- ---------- Dar ---------- ---------- ---------- ---------- ---------- Daq ---------- ---------- ---------- ---------- ---------- Dap ---------- ---------- ---------- ---------- ---------- Daa ---------- ---------- ---------- ---------- ---------- Dae ---------- ---------- ---------- ---------- ---------- Dan ---------- ---------- ---------- ---------- ---------- L1orl .......... .......... .......... .......... .......... Musmht ---------- ---------- ---------- ---------- ---------- Dad ---------- ---------- ---------- ---------- ---------- Af081111 .......... .......... .......... .......... .......... Af081109 .......... .......... .......... .......... .......... L1spa .......... .......... .......... .......... .......... Tfnode1 .......... .......... .......... .......... .......... [ 6050 ' ' ' ' ] L1mdA2 ACTCAAGAAG GTGGACTTCA GAAAATCAAA TAACCCCATT AAAAAATGGG Dat ---------- ---------- ---------- ---------- ---------- Af081112 .......... ......c... .......... .......c.. .......... Af081107 .......... ......c... .......... .......c.. .......... Ac5938b .......... ......c... .......... .......c.. .......... Tfnode2 .......... ......c... .......... .......c.. .......... Ac4405lr .......... ......c... .......... .......c.. .......... Af081113 .......... ......c... .......... .......c.. .......... Af081106 .......... ......c... .......... .......c.. .......... D2 ---------- ---------- ---------- ---------- ---------- D3 ---------- ---------- ---------- ---------- ---------- L1md4 .......... ......c... .......... .......c.. .......... Dab ---------- ---------- ---------- ---------- ---------- Dar ---------- ---------- ---------- ---------- ---------- Daq ---------- ---------- ---------- ---------- ---------- Dap ---------- ---------- ---------- ---------- ---------- Daa ---------- ---------- ---------- ---------- ---------- Dae ---------- ---------- ---------- ---------- ---------- Dan ---------- ---------- ---------- ---------- ---------- L1orl .......... ......c... .......... .......c.. .......... Musmht ---------- ---------- ---------- ---------- ---------- Dad ---------- ---------- ---------- ---------- ---------- Af081111 .......... ......c... .......... .......c.. .......... Af081109 .......... ......c... .......... .......c.. .......... L1spa .......... ......c... .......... .......c.. .......... Tfnode1 .......... ......c... .......... .......c.. .......... [ 6100 ' ' ' ' ] L1mdA2 GCTCAGAACT GAACAAAGAA TTCTCACCCG AGGAATACCG AATGGCAGAG Dat ---------- ---------. ........t. .......... .......... Af081112 .......... .......... ........t. .......... .......... Af081107 .......... .......... ........t. .......... .......... Ac5938b .......... .......... ........t. .......... .......... Tfnode2 .......... .......... ........t. .......... .......... Ac4405lr .......... .......... ........t. .......... .......... Af081113 .......... .......... ........t. .......... .......... Af081106 .......... .......... ........t. .......... .......... D2 ---------- ---------- ---------- ---------- ---------- D3 ---------- ---------- ---------- ---------- ---------- L1md4 .......... .......... ........t. .......... .......... Dab ---------- ---------. ........t. .......... .......... Dar ---------- ---------. ........t. .......... .......... Daq ---------- ---------. ........t. .......... .......... Dap ---------- ---------. ........t. .......... .......... Daa ---------- ---------. ........t. .......... .......... Dae ---------- ---------. ........t. .......... .......... Dan ---------- ---------. ........t. .......... .......... L1orl .......... .......... ........t. .......... .......... Musmht ---------- ---------- ---------- ---------- ---------- Dad ---------- ---------. ........t. .......... .......... Af081111 .......... .......... ........t. .......... .......... Af081109 .......... .......... ........t. .......... .......... L1spa .......... .......... ........t. .......... .......... Tfnode1 .......... .......... ........t. .......... .......... [ 6150 ' ' ' ' ] L1mdA2 AAGCACTTGA AAAAATGTTC AACATCCTTA ATCATCAGGG AAATGCAAAT Dat ......c... .......... .......... .......... .......... Af081112 ......c... .......... .......... .......... .......... Af081107 ......c... .......... .......... .......... .......... Ac5938b ......c... .......... .......... .......... .......... Tfnode2 ......c... .......... .......... .......... .......... Ac4405lr ......c... .......... .......... .......... .......... Af081113 ......c... .......... .......... .........t .......... Af081106 ......c... .......... .......... .......... .......... D2 ---------- ---------- ---------- ---------- ---------- D3 ---------- ---------- ---------- ---------- ---------- L1md4 ......c... .......... .......... .......... .......... Dab ......c... .......... .......... .......... .......... Dar ......c... .......... .......... .......... .......... Daq ......c... .......... .......... .......... .......... Dap ......c... .......... .......... .......... .......... Daa ......c... .......... .......... .......... .......... Dae ......c... .......... .......... .......... .......... Dan ......c... .......... .......... .......... .......... L1orl ......c... .......... .......... .......... .......... Musmht ---------- ---------- ---------- ---------- ---------- Dad ......c... .......... .......... .......... .......... Af081111 ......c... .......... .......... .......... .......... Af081109 ......c... .......... .......... .......... .......... L1spa ......c... .......... .......... .......... .......... Tfnode1 ......c... .......... .......... .......... .......... [ 6200 ' ' ' ' ] L1mdA2 CAAAACAACC CTGAGATTCC ACCTCACACC AGTCAGAATG GCTAAGATCA Dat .......... .......... .......... ...g...... .......... Af081112 .......... .......... .......... ...g...... .......... Af081107 .......... .......... .......... ...g...... .......... Ac5938b .......... .......... .......... ...g...... .......... Tfnode2 .......... .......... .......... ...g...... .......... Ac4405lr .......... .......... .......... ...g...... .......... Af081113 .......... .......... .......... ...g...... .......... Af081106 .......... .......... .......... ...g...... .......... D2 ---------- ---------- ---------- ---------- ---------- D3 ---------- ---------- ---------- ---------- ---------- L1md4 .......... .......... .......... .......... .......... Dab .......... .......... .......... ...g...... .......... Dar .......... .......... .......... ...g...... .......... Daq .......... .......... .......... ...g...... .......... Dap .......... .......... .......... ...g...... .......... Daa .......... .......... .......... ...g...... .......... Dae .......... .......... .......... ...g...... .......... Dan ....g..... .......... .......... ...g...... .......... L1orl .......... .......... .......... ...g...... .......... Musmht ---------- ---------- ---------- ---------- ---------- Dad .......... .......... .......... ...g...... ........t. Af081111 .......... .......... .......... ...g...... .......... Af081109 .......... .......... .......... ...g...... .......... L1spa .......... .......... .......... ...g...... .......... Tfnode1 .......... .......... .......... ...g...... .......... [ 6250 ' ' ' ' ] L1mdA2 AAAATTCAGG TGACAGCAGA TGCTGGCGAG GATGTGGAGA AAGAGGAACA Dat .......... .......... .......... .......... ......c... Af081112 .......... .......... .......... .......... .......... Af081107 .......... .......... .......... .......... .......... Ac5938b .......... .......... .......... .......... .......... Tfnode2 .......... .......... .......... .......... .......... Ac4405lr .......... .......... .......... .......... .......... Af081113 .......... .......... .......... .......... .......... Af081106 .......... .......... .......... .......... .......... D2 ---------- ---------- ---------- ---------- ---------- D3 ---------- ---------- ---------- ---------- ---------- L1md4 .......... .......... .......... .......... .......... Dab .......... .......... .......... .......... .......... Dar .......... .......... .......... .......... .......... Daq .......... .......... .......... .......... .......... Dap .......... .......... .......... .......... .......... Daa .......... .......... .......... .......... .......... Dae .......... .......... .......... .......... .......... Dan .......... .......... .......... .......... .......... L1orl .......... .......... .......... .......... .......... Musmht ---------- ---------- ---------- ---------- ---------- Dad .......... .......... .......... .......... .......... Af081111 .......... .......... .......... .......... .......... Af081109 .......... .......... .......... .......... .......... L1spa .......... .......... .......... .......... .......... Tfnode1 .......... .......... .......... .......... .......... [ 6300 ' ' ' ' ] L1mdA2 CTCCTCCATT GTTGGTGGGA GTGCAGGCTT GTACAACCAC TCTGGAAATC Dat .......... .......... t......... .......... .......... Af081112 .......... .......... t......... .......... .......... Af081107 .......... .......... t......... .......... .......... Ac5938b .......... .......... t......... .......... .......... Tfnode2 .......... .......... t......... .......... .......... Ac4405lr .......... .......... t......... .......... .......... Af081113 .......... .......... t......... .......... .......... Af081106 .......... .......... t......... .......... .......... D2 ---------- ---------- ---------- ---------- ---------- D3 ---------- ---------- ---------- ---------- ---------- L1md4 .......... .......... t......... .......... .......... Dab .......... .......... t......... .......... .......... Dar .......... .......... t.a....... .......... .......... Daq .......... .......... t......... .......... .......... Dap .......... .......... t......... .......... .......... Daa .......... .......... t......... .......... .......... Dae .......... .......... t......... .......... .......... Dan .......... ........a. t......... .......... .......... L1orl .......... ........a. t......... .......... .......... Musmht ---------- ---------- ---------- ---------- ---------- Dad .......... .......... t......... .......... .......... Af081111 .......... .......... t......... .......... .......... Af081109 .......... .......... t......... .......... .......... L1spa .......... .......... t......... .......... .......... Tfnode1 .......... .......... t......... .......... .......... [ 6350 ' ' ' ' ] L1mdA2 AGTCTGGCGG TTCCTCAGAA AACTGGACAT AGTACTACCG GAGGATCCAG Dat .......... .......... ..t....... .......... .......... Af081112 .......... .......... ..t....... .......... .......... Af081107 .......... .......... ..t....... .........a .......... Ac5938b .......... .......... ..t....... .......... .......... Tfnode2 .......... .......... ..t....... .......... .......... Ac4405lr .......... .......... ..t....... .......... .......... Af081113 .......... .......... ..t....... .......... .......... Af081106 .......... .......... ..t....... .......... .......... D2 ---------- ---------- ---------- ---------- --........ D3 ---------- ---------- ---------- ---------- --........ L1md4 .......... .......... ..t....... .......... .......... Dab .......... .......... ..t....... .......... .......... Dar .......... .......... ..t....... .......... .......... Daq .......... .......... ..t....... .......... .......... Dap .......... .......... ..t....... .......... .......... Daa .......... .......... ..t....... .......... .......... Dae .......... .......... ..t....... .......... .......... Dan .......... .......... ..t....... .......... .......... L1orl .......... .......... ..t....... .......... .......... Musmht ---------- ---------- ---------- ---------- ---------- Dad .......... .......... ..t....... .......... .......... Af081111 .......... .......... ..t....... .......... .......... Af081109 .......... .......... ..t....... .......... ..a....... L1spa .......... .......... ..t....... .......... .......... Tfnode1 .......... .......... ..t....... .......... .......... [ 6400 ' ' ' ' ] L1mdA2 CAATACCTCT CCTGGGCATA TATCCAGAAG ATGCCCCAAC AGGTAAGAAG Dat .......... .......... .......... .a........ t......... Af081112 .......... .......... .......... .a........ t......... Af081107 .......... .......... .......... .a........ t......... Ac5938b .......... .......... .......... .a........ t......... Tfnode2 .......... .......... .......... .a........ t......... Ac4405lr .......... .......... .......... .a........ t......... Af081113 .......... .......... .......... .a........ t......... Af081106 .......... .......... .......... .a........ t......... D2 .......... .......... .......... .a........ t......... D3 a......... .......... .......... .a........ t......... L1md4 .......... .......... .......... .a........ t......... Dab .......... .......... .......... .a........ t......... Dar .......... .......... .......... .a........ t......... Daq .......... .......... .......... .a........ t......... Dap .......... .......... .......... .a........ t......... Daa .......... .......... .......... .a........ t......... Dae .......... .......... .......... .a........ t......... Dan .......... .......... .......... .a........ t......... L1orl .......... .......... .......... .a........ t......... Musmht ---------- ---------- ---------- ---------- ---------- Dad .......... .......... .......... .a........ t......... Af081111 .......... .......... .......... .a........ t......... Af081109 .......... .......... .......... .a........ t......... L1spa .......... .......... .......... .a........ t......... Tfnode1 .......... .......... .......... .a........ t......... [ 6450 ' ' ' ' ] L1mdA2 GACACATGCT CCACTATGTT CATAGCAGCC TTATTTATAA TAGCCAGAAG Dat .......... .......... .......... .......... .........a Af081112 .......... .......... .......... .......... .........a Af081107 .......... .......... .......... .......... .........a Ac5938b .......... .......... .......... .......... .........a Tfnode2 .......... .......... .......... .......... .........a Ac4405lr .......... .......... .......... .......... .........a Af081113 .......... .......... .......... .......... .........a Af081106 .......... .......... .......... .......... .........a D2 .......... .......... .......... .......... .........a D3 .......... .......... .......... .......... .........a L1md4 .......... .......... .......... .......... .........a Dab .......... .......... .......... .......... .........a Dar .......... .......... .......... .......... .........a Daq .......... .......... .......... .......... .........a Dap .......... .......... .......... .......... .........a Daa .......... .......... .......... .......... .........a Dae .......... .......... .......... .......... .........a Dan .......... .......... .......... .......... .........a L1orl .......... .......... .......... .......... .........a Musmht ---------- ---------- ---------- ---------- ---------- Dad .......... .......... .......... .......... .........a Af081111 .......... .......... .......... .......... .........a Af081109 .......... .......... .......... .......... .........a L1spa .......... .......... .......... .......... .........a Tfnode1 .......... .......... .......... .......... .........a [ 6500 ' ' ' ' ] L1mdA2 CTGGAAAGAA CCTAGATGCC CCTCAACAGA GGAATGGATA CAGAAAATGT Dat .......... ..c....... .......... .......... .......... Af081112 .......... ..c....... .......... .......... .......... Af081107 .......... ..c....... .......... .......... .......... Ac5938b .......... ..c....... .......... .......... .......... Tfnode2 .......... ..c....... .......... .......... .......... Ac4405lr .......... ..c....... .......... .......... .......... Af081113 .......... ..c....... .......... .......... .......... Af081106 .......... ..c....... .......... .......... .......... D2 .......... ..c....... .......... .......... .......... D3 .......... ..c....... .......... .......... .......... L1md4 .......... ..c....... .......... .......... .......... Dab .......... ..c....... .......... .......... .......... Dar .......... ..c....... .......... .......... .......... Daq .......... ..c....... .......... .......... .......... Dap .......... ..c....... .......... .......... .......... Daa .......... ..c....... .......... .......... .......... Dae .......... ..c....... .......... .......... .......... Dan .......... ..c....... .......... .......... .......... L1orl .......... ..c....... .......... .......... .......... Musmht ---------- ---------- ---------- ---------- ---------- Dad .......... ..c....... .......... .......... .......... Af081111 .......... ..c....... .......... .......... .......... Af081109 .......... ..c....... .......... .......... .......... L1spa .......... ..c....... .......... .......... .......... Tfnode1 .......... ..c....... .......... .......... .......... [ 6550 ' ' ' ' ] L1mdA2 GGTACATCTA CACAATGGAG TACTACTCAG CTATTAAAAA GAATGAATTT Dat .......... .......... .......... .......... .......... Af081112 .......... .......... .......... .......... .......... Af081107 .......... .......... .......... .......... .......... Ac5938b .......... .......... .......... .......... .......... Tfnode2 .......... .......... .......... .......... .......... Ac4405lr .......... .......... .......... .......... .......... Af081113 .......... .......... .......... .......... .......... Af081106 .......... .......... .......... .......... .......... D2 .......... .......... c......... .......... .......... D3 .......... .......... .......... .......... .......... L1md4 .......... .......... .......... .......... .......... Dab .......... .......... .......... .......... .......... Dar .......... .......... .......... .......... .......... Daq .......... .......... .......... .......... .......... Dap .......... .......... .......... .......... .......... Daa .......... .......... .......... .......... .......... Dae .......... .......... .......... .......... .......... Dan .......... .......... .......... .......... .......... L1orl .......... .......... .......... .......... .......... Musmht ---------- ---------- ---------- ---------- ---------- Dad .......... .......... .......... .......... .......... Af081111 .......... .......... .......... .......... .......... Af081109 .......... .......... .......... .......... .......... L1spa .......... .......... .......... .......... .......... Tfnode1 .......... .......... .......... .......... .......... [ 6600 ' ' ' ' ] L1mdA2 ATGAAATTCC TAGCCAAATG GATGGACCTG GAGGGCATCA TCCTGAGTGA Dat .......... .......... .......... ...a...... .......... Af081112 .......... .......... .......... ...a...... .......... Af081107 .......... .......... .......... ...a...... .......... Ac5938b .......... .......... .......... ...a...... .......... Tfnode2 .......... .......... .......... ...a...... .......... Ac4405lr .......... .......... .......... ...a...... .t........ Af081113 .......... .......... .......... ...a...... .......... Af081106 .......... .......... .......... ...a...... .......... D2 .......... .......... .......... ...a...... .......... D3 .......... .......... .......... ...a...... .......... L1md4 .......... .......... .......... ...a...... .......... Dab .......... .......... .......... ...a...... .......... Dar .......... .......... .......... ...a...... .......... Daq .......... .......... .......... ...a...... .......... Dap .......... .......... .......... ...a...... .......... Daa .......... .......... .......... ...a...... .......... Dae .......... .......... .......... ...a...... .......... Dan .......... .......... .......... ...a...... .......... L1orl .......... .......... .......... ...a...... .......... Musmht ---------- ---------- ---------- ---------- ---------- Dad .......... .......... .......... ...a...... .......... Af081111 .......... .........a .......... ...a...... .......... Af081109 .......... .......... .......... ...a...... .......... L1spa .......... .......... .......... ...a...... .......... Tfnode1 .......... .......... .......... ...a...... .......... [ 6650 ' ' ' ' ] L1mdA2 GGTAACACAT TCACAAAGAA ACTCACACAA TATGTATTCA CTGATAAGTG Dat .........a ........g. .......... ......c... .......... Af081112 .........a ........g. .......... ......c... .......... Af081107 .........a ........g. .......... ......c... .......... Ac5938b .........a ........g. .......... ......c... .......... Tfnode2 .........a ........g. .......... ......c... .......... Ac4405lr .........a ........g. .......... ......c... .......... Af081113 .........a ........g. .......... ......c... .......... Af081106 .........a ........g. .......... ......c... .......... D2 .........a ........g. .......... ......c... ..-------- D3 .........a ........g. .......... ......c... ..-------- L1md4 .........a ........g. .......... ......c... .......... Dab .........a ........g. .......... ......c... .......... Dar .........a ........g. .......... ......c... .......... Daq .........a ........g. .......... ......c... .......... Dap .........a ........g. .......... ......c... .......... Daa .........a ........g. .......... ......c... .......... Dae .........a ........g. .......... ......c... .......... Dan .........a ........g. .......... ......c... .......... L1orl .........a ........g. .......... ......c... .......... Musmht ---------- ---------- ---------- ---------- ---------- Dad .........a ........g. .......... ......c... .......... Af081111 .........a ........g. .......... ......c... .......... Af081109 .........a ........g. .......... ......c... .......... L1spa .........a ........g. .......... ......c... .......... Tfnode1 .........a ........g. .......... ......c... .......... [ 6700 ' ' ' ] L1mdA2 GATATTAGC- ----CCCAAA CCT-AGGATA CCCAAGATAT AAGATATAAT Dat ....c....- ----..a... ...-...... ....c..... ......c... Af081112 ....c....- ----..a... ...-...... ....c..... ......c... Af081107 .........- ----..a... ...-...... ....c..... ......c... Ac5938b ....c....- ----..a... ...-...... ....c..... ......c... Tfnode2 ....c....- ----..a... ...-...... ....c..... ......c... Ac4405lr ....c....- ----..a... ...-...... ....c..... ......c... Af081113 ....c....- ----..a... ...-...... ....c..... ......c... Af081106 ....c....- ----..a... ...-...... ....c..... ......c... D2 ---------- ---------- ---------- ---------- ---------- D3 ---------- ---------- ---------- ---------- ---------- L1md4 ....c....- ----..a... ...-...... ....c..... ......c... Dab ....c....- ----..a... ...-...... ....c..... ......c... Dar ....c....- ----..a... ...-...... ....c..... ......c... Daq ....c....- ----..a... ...-...... ....c..... ......c... Dap ....c....- ----..a... ...-...... ....c..... ......c... Daa ....c....- ----..a... ...-...... ....t..... ......c... Dae ....c....- ----..a... ...-...... ....c..... ......c... Dan ....c....- ----..a... ...-...... ....c..... ......c.c. L1orl ....c....- ----..a... ...-...... ....c..... ......c... Musmht ---------- ---------- ---------- ---------- ---------- Dad ....c....- ----..a... ...-...... ....c..... ......c... Af081111 ....c....- ----..a... ...-...... ....c..... ......c... Af081109 ....c....g agct..a... ...-...... ....c..... ......c... L1spa ....c....- ----..a... ...-...... ....c..... ......c... Tfnode1 ....c....- ----..a... ...-...... ....c..... ......c... [ ' 6750 ' ' ' ] L1mdA2 TTGCTAAACA CATGAAACTC AAGGAGAATG AAGACTGAAG TGTGGACACT Dat ..c....... .......... ...a.a.... .......... .......... Af081112 ..c....... .........t ...a.a.... .......... .......... Af081107 ..c....... .......... ...a.a.... .......... .......... Ac5938b ..c....... .......... ...a.a.... .......... .......... Tfnode2 ..c....... .......... ...a.a.... .......... .......... Ac4405lr ..c....... .......... ...a.a.... .......... .......... Af081113 ..c....... .......... ...a.a.... .......... .......... Af081106 ..c....... .......... ...a.a.... .......... .......... D2 ---------- ---------- ---------- ---------- ---------- D3 ---------- ---------- ---------- ---------- ---------- L1md4 ..c....... .......... ...a.a.... .......... .......... Dab ..c....... .......... ...a.a.... .......... .......... Dar ..c....... .......... ...a.a.... .......... .......... Daq ..c....... .......... ...a.a.... .......... .......... Dap ..c....... .......... ...a.a.... .......... .......... Daa ..c....... .......... ...a.a.... .......... .......... Dae ..c....... .......... ...a.a.... .......... .......... Dan ..c....... .......... ...a.a.... .......... .......... L1orl ..c....... .......... ...a.a.... .......... .......... Musmht ---------- ---------- ---------- ---------- ---------- Dad ..c....... .......... ...a.a.... .......... .......... Af081111 ..c....... .......... ...a.a.... .......... .......... Af081109 ..c....... .......... ...a.a.... .......... .......... L1spa ..c....... .......... ...a.a.... .......... .......... Tfnode1 ..c....... .......... ...a.a.... .......... .......... [ ' 6800 ' ' ' ] L1mdA2 ATGCCCCTCC TTAGATTTGG GAACAAAACA CCCATGGAAG GAGTTACAGA Dat .......... .....ag... .......... .......... .....g.... Af081112 .......... .....ag... .......... .......... .......... Af081107 .......... .....ag... .......... .......... .......... Ac5938b .......... .....ag... .......... .......... .......... Tfnode2 .......... .....ag... .......... .......... .......... Ac4405lr .......... .....ag... .......... .......... .......... Af081113 .......... .....ag... .......... .......... .......... Af081106 .......... .....ag... .......... .......... .......... D2 ---------- ---------- ---------- ---------- ---------- D3 ---------- ---------- ---------- ---------- ---------- L1md4 .......... .....ag... .......... .......... .......... Dab .......... .....ag... .......... .......... .......... Dar .......... .....ag... .......... .......... .......... Daq .......... .....ag... .......... .......... .......... Dap .......... .....ag... .......... .......... .......... Daa .......... .....ag... .......... .......... .......... Dae .......... .....ag... .......... .......... .......... Dan .......... .....ag... .......... .......... .......... L1orl .......... .....ag... .......... .......... .......... Musmht ---------- ---------- ---------- ---------- ---------- Dad .......... .....ag... .......... .......... .......... Af081111 .......... .....ag... .......... .......... .......... Af081109 .......... .....ag... .......... .......... .......... L1spa .......... .....ag... .......... .......... .......... Tfnode1 .......... .....ag... .......... .......... .......... [ ' 6850 ' ' ' ] L1mdA2 GACGGAGTTT GGAGCTGAGA TGAAAGGATG GACCATGTAG AGACTGCCAT Dat a..aa...a. .......... .......... .......... .......... Af081112 a.aa...... .......... .......... .......... .......... Af081107 a.aa...... .......... .......... .......... .......... Ac5938b a.aa...... .......... .......... .......... .......... Tfnode2 a.aa...... .......... .......... .......... .......... Ac4405lr a.aa...... .......... .......... .......... .......... Af081113 a.aa...... .......... .......... .......... .......... Af081106 a.aa...... .......... .......... .......... .......... D2 ---------- ---------- ---------- ---------- ---------- D3 ---------- ---------- ---------- ---------- ---------- L1md4 a.aa...... .......... .......... .......... .......... Dab a.aa...... .......... .......... .......... .......... Dar a.aa...... .......... .......... .......... .......... Daq a.aa...... .......... .t........ .......... .......... Dap a.aa...... .......... .......... .......... .......... Daa a.aa...... .......... .......... .......... .......... Dae a.aa...... .......... .......... .......... .......... Dan a.aa...... .......... .......... .......... ........t. L1orl a.aa...... .......... .......... .......... .......... Musmht ---------- ---------- ---------- ---------- ---------- Dad a.aa...... .......... .......... .......... .......... Af081111 a.aa...... .......... ........g. .......... .......... Af081109 a.aa...... .......... ........g. .......... .......... L1spa a.aa...... .......... ........g. .......... .......... Tfnode1 a..aa...a. .......... .......... .......... .......... [ ' 6900 ' ' ' ] L1mdA2 AGCCAGGGAT CCACCCCATA ATCAGCATCC AAACGCTGAC ACCATTGCAT Dat .......... .......... .......... .......... .....a.... Af081112 .t........ .......... .......... .......... .......... Af081107 .t........ .......... .......... .......... .......... Ac5938b .t........ .......... .......... .......... .......... Tfnode2 .t........ .......... .......... .......... .......... Ac4405lr .t........ .......... .......... .......... .......... Af081113 .t........ .......... .......... .......... .......... Af081106 .t........ .......... .......... .......... .......... D2 ---------- ---------- ---------- ---------- ---------- D3 ---------- ---------- ---------- ---------- ---------- L1md4 .t........ .......... .......... .......... .......... Dab .t........ .......... .......... .......... .......... Dar .t........ .......... .......... .......... .......... Daq .t........ .......... .......... .......... .......... Dap .t........ .......... .......... .......... .......... Daa .......... .......... .......... .......... .......... Dae .t........ .......... .......... .......... .......... Dan .t........ .......... .......... .......... .......... L1orl .t........ .......... .......... .......... .......... Musmht ---------- ---------- ---------- ---------- ---------- Dad .t........ .......... .......... .......... .......... Af081111 .t........ .......... .......... .......... .......... Af081109 .t........ .......... .......... .......... .......... L1spa .t........ .......... .......... .......... .......... Tfnode1 .t........ .......... ......t... ...t...... .......... [ ' 6950 ' ' ' ] L1mdA2 ACACTAGCAA GATTTTATTG AAAGGACGCA GATGTAGCTG TCTCTTGTGA Dat .......... .......c.. .......c.. .......... .......... Af081112 .t........ ........c. .......c.. .......... ........tt Af081107 .t........ ........c. .......c.. .......... .......... Ac5938b .t........ ........c. .......c.. .......... .......... Tfnode2 .t........ ........c. .......c.. .......... .......... Ac4405lr .t........ ........c. .......c.. .......... .......... Af081113 .t........ ........c. .......c.. .......... .......... Af081106 .t........ ........c. .......c.. .......... .......... D2 ---------- ---------- ---------- ---------- ---------- D3 ---------- ---------- ---------- ---------- ---------- L1md4 .t........ ........c. .......c.. .......... .......... Dab .t........ ........c. .......c.. .......... .......... Dar .t........ ........c. .......c.. .......... .......... Daq .t........ ........c. .......c.. .......... .......... Dap .t........ ........c. .......c.. .......... .......... Daa .t........ ........c. .......c.. .......... .......... Dae .t........ ........c. .......c.. .......... .......... Dan .t........ ........c. .......c.. .......... .......... L1orl .t........ ........c. .......c.. .......... .......... Musmht ---------- ---------- ---------- ---------- ---------- Dad .t........ ........c. .......c.. .......... .......... Af081111 .t........ ........c. .......c.. .......... .......... Af081109 .t........ ........c. .......c.. .......... .......... L1spa .t........ ........c. .......c.. .......... .......... Tfnode1 .......... .......c.. .......c.. .......... .......... [ ' 7000 ' ' ' ] L1mdA2 GACTATGCCG GGGCCCAGCA AACACAGAAG TGGATGCTCA CAGTCAGCTA Dat .......... .....t.... .......... .......... ......c... Af081112 ........t. .....t.... .......... .......... .......... Af081107 .......... .....t.... .......... .......... .......... Ac5938b .......... .....t.... .......... .......... .......... Tfnode2 .......... .....t.... .......... .......... .......... Ac4405lr .......... .....t.... .......... .......... .......... Af081113 .......... .....t.... .......... .......... .......... Af081106 .......... .....t.... .......... .......... .......... D2 ---------- ---------- ---------- ---------- ---------- D3 ---------- ---------- ---------- ---------- ---------- L1md4 .......... .....t.... .......... .......... .......... Dab .......... .....t.... .......... .......... .......... Dar .......... .....t.... .......... .......... .......... Daq .......... .....t.... .......... .......... .......... Dap .......... .....t.... .......... .......... .......... Daa .......... .....t.... .......... .......... .......... Dae .......... .....t...g .......... .......... .......... Dan .......... .....t.... .......... .......... .......... L1orl .......... .....t.... .......... .......... .......... Musmht ---------- ---------- ---------- ---------- ---------- Dad .........c t....t.... .......... .......... .......... Af081111 .......... .....t.... .......... .......... .......... Af081109 .......... .....t.... .......... .......... .......... L1spa .......... .....t.... .......... .......... .......... Tfnode1 .......... .....t.... .......... .......... .......... [ ' 7050 ' ' ' ] L1mdA2 ATGGATGGAT CATAGGGCTC CCAATGGAGG AGCTAGAGAA AGTAGCCAAG Dat .......... ..c....... .......... .......... ....c..... Af081112 .......... ..c....... .......... .......... ....c..... Af081107 .......... ..c....... .......... .......... ....c..... Ac5938b .......... ..c....... .......... .......... ....c..... Tfnode2 .......... ..c....... .......... .......... ....c..... Ac4405lr .......... ..c....... .......... .......... ....c..... Af081113 .......... ..c....... .......... .......... ....c..... Af081106 .......... ..c....... .......... .......... ....t..... D2 ---------- ---------- ---------- ---------- ---------- D3 ---------- ---------- ---------- ---------- ---------- L1md4 .......... ..c....... .......... .......... ....c..... Dab .......... ..c....... .......... .......... ....c..... Dar .......... ..c....... .......... .......... ....c..... Daq .......... ..c....... .......... .......... ....c..... Dap .......... ..c....... .......... .......... ....c..... Daa .......... ..c....... .......... .......... ....c..... Dae .......... ..c....... .......... .......... ....t..... Dan .......... ..c....... .......... .......... ....c..... L1orl .......... ..c....... .......... .......... ....c..... Musmht ---------- ---------- ---------- ---------- ---------- Dad .......... ..c....... .......... .......... ....c..... Af081111 .......... ..c....... .......... .......... ....c..... Af081109 .......... ..c....... .......... .......... ....c..... L1spa .......... ..c....... .......... .......... ....c..... Tfnode1 .......... ..c....... .......... .......... ....c..... [ ' 7100 ' ' ' ] L1mdA2 GAGCTAAAGG GATCTGCAAC CCTATAGGTG GAACAACATT ATGAGCTAAC Dat .......... .....t.... .....----- ---------- ---------- Af081112 .......... .....t.... .......... .......... ....a..... Af081107 .......... .....t.... .......... .......... ....a..... Ac5938b .......... .....t.... .......... .......... ....a..... Tfnode2 .......... .....t.... .......... .......... ....a..... Ac4405lr .......... .....t.... .......... .......... ....a..... Af081113 .......... .....t.... .......... .......... ....a..... Af081106 .......... .....t.... .......... .......... ....a..... D2 ---------- ---------- ---------- ---------- ---------- D3 ---------- ---------- ---------- ---------- ---------- L1md4 .......... .....t.... .......... .......... ....a..... Dab .......... .....t.... .....----- ---------- ---------- Dar .......... .....t.... .....----- ---------- ---------- Daq .......... .g...t.... .....----- ---------- ---------- Dap .......... .....t.... .....----- ---------- ---------- Daa .......... .....t.... .....----- ---------- ---------- Dae .......... .....t.... .....----- ---------- ---------- Dan .......... .....t.... .....----- ---------- ---------- L1orl .......... .....t.... .......... ........c. ....a..... Musmht ---------- ---------- ---------- ---------- ---------- Dad .......... .......... .....----- ---------- ---------- Af081111 .......... .......... .......... .......... ....a..... Af081109 .......... .......... .......... .......... ....a..... L1spa .......... .......... .......... .......... ....a..... Tfnode1 .......... .....t.... .......... .......... ....a..... [ ' 7150 ' ' ' ] L1mdA2 CAGTACCCCG GAGCTCTTGA CTCTAGCTGC ATATATATCA AAAGATGGCC Dat ---------- ---------- ---------- ---------- ---------- Af081112 .........t .......... .......... ....g..... .......... Af081107 .........t .......... .......... ....g..... .......... Ac5938b .........t .......... .......... ....g..... .......... Tfnode2 .........t .......... .......... ....g..... .......... Ac4405lr .........t .......... .......... ....g..... .......... Af081113 .........t .......... .......... ....g..... .......... Af081106 .........t .......... .......... ....g..... .......... D2 ---------- ---------- ---------- ---------- ---------- D3 ---------- ---------- ---------- ---------- ---------- L1md4 .......... .......... .......... ....g..... .......... Dab ---------- ---------- ---------- ---------- ---------- Dar ---------- ---------- ---------- ---------- ---------- Daq ---------- ---------- ---------- ---------- ---------- Dap ---------- ---------- ---------- ---------- ---------- Daa ---------- ---------- ---------- ---------- ---------- Dae ---------- ---------- ---------- ---------- ---------- Dan ---------- ---------- ---------- ---------- ---------- L1orl .........t .......... .......... ....g..... .......... Musmht ---------- ---------- ---------- ---------- ---------- Dad ---------- ---------- ---------- ---------- ---------- Af081111 .........t .......... .......... ....g..... .......... Af081109 .........t .......... .......... ....g..... .......... L1spa .........t .......... .......... ....g..... .......... Tfnode1 .........t .......... .......... ....g..... .......... [ ' 7200 ' ' ' ] L1mdA2 TAGTCGGCCA TCACTGGAAA GAGAGGCCCA TTGGACTTGC AAACTTTATA Dat ---------- ---------- ---------- ---------- ---------- Af081112 .......... .......... .......... ......ac.. .g.....g.g Af081107 .......... .......... .......... ......ac.. .g.....g.g Ac5938b .......... .......... .......... ......ac.. .g.....g.g Tfnode2 .......... .......... .......... ......ac.. .g.....g.g Ac4405lr .......... .......... .......... ......ac.. .g.....g.g Af081113 .......... .......... .......... ......ac.. .g.....g.g Af081106 .......... .......... .......... ......ac.. .g.....g.g D2 ---------- ---------- ---------- ---------- ---------- D3 ---------- ---------- ---------- ---------- ---------- L1md4 .......... .......... .......... ......ac.. .g.....g.g Dab ---------- ---------- ---------- ---------- ---------- Dar ---------- ---------- ---------- ---------- ---------- Daq ---------- ---------- ---------- ---------- ---------- Dap ---------- ---------- ---------- ---------- ---------- Daa ---------- ---------- ---------- ---------- ---------- Dae ---------- ---------- ---------- ---------- ---------- Dan ---------- ---------- ---------- ---------- ---------- L1orl .......... .......... .......... ......ac.. .g.....g.g Musmht ---------- ---------- ---------- ---------- ---------- Dad ---------- ---------- ---------- ---------- ---------- Af081111 .......... .......... .......... ......ac.. .g.....g.g Af081109 .......... .......... .......... ......ac.. .g.....g.g L1spa .......... .......... .......... ......ac.. .g.....g.g Tfnode1 .......... .......... .......... ......ac.. .g.....g.g [ ' 7250 ' ' ' ] L1mdA2 TGCCCCAGTA CAGGGGAATA CCAGGGCCAA A-AAGGGGGA GTGGGTGGGC Dat ---------- ---------- ---------- ---------- ---------- Af081112 ......g... .......tcg .......... .-gg...... .........t Af081107 ......g... ........cg .......... .-gg...... .........t Ac5938b ......g... ........cg .......... .-gg...... .........t Tfnode2 ......g... ........cg .......... .-gg...... .........t Ac4405lr ......g... ........cg .......... .-gg...... .........t Af081113 ......g... ........cg .......... .-gg...... .........t Af081106 ......g... ........cg .......... .-gg...... .........t D2 ---------- ---------- ---------- ---------- ---------- D3 ---------- ---------- ---------- ---------- ---------- L1md4 ......g... ........cg .......... .-gg...... .........t Dab ---------- ---------- ---------- ---------- ---------- Dar ---------- ---------- ---------- ---------- ---------- Daq ---------- ---------- ---------- ---------- ---------- Dap ---------- ---------- ---------- ---------- ---------- Daa ---------- ---------- ---------- ---------- ---------- Dae ---------- ---------- ---------- ---------- ---------- Dan ---------- ---------- ---------- ---------- ---------- L1orl ......g... ........cg .......... .-gg...... .........t Musmht ---------- ---------- ---------- ---------- ---------- Dad ---------- ---------- ---------- ---------- ---------- Af081111 ......g... ........cg .......... .ggg...... .........t Af081109 ......g... ........cg .......... .ggg...... .........t L1spa ......g... ........cg .......... .ggg...... .........t Tfnode1 ......g... ........cg .......... .-gg...... .........t [ ' 7300 ' ' ' ] L1mdA2 AGGGGAGTGG GGGTGGGTGG ATATGGGGGA CTTTTGGTAT AGCATTGGAA Dat ---------- ---------- ---------- ---------- ---------- Af081112 .......... .......... g..a...... .......... .......... Af081107 .......... .......... g..a...... .......... .......... Ac5938b .......... .......... g..a...... .......... .......... Tfnode2 .......... .......... g..a...... .......... .......... Ac4405lr .......... .......... g..a...... .......... .....---.. Af081113 .......... .......... g..a...... .......... .......... Af081106 ........t. .......... g..a...... .......... .......... D2 ---------- ---------- ---------- ---------- ---------- D3 ---------- ---------- ---------- ---------- ---------- L1md4 .......... .......... g..a...... .......... .......... Dab ---------- ---------- ---------- ---------- ---------- Dar ---------- ---------- ---------- ---------- ---------- Daq ---------- ---------- ---------- ---------- ---------- Dap ---------- ---------- ---------- ---------- ---------- Daa ---------- ---------- ---------- ---------- ---------- Dae ---------- ---------- ---------- ---------- ---------- Dan ---------- ---------- ---------- ---------- ---------- L1orl .......... .......... g..a...... .......... .......... Musmht ---------- ---------- ---------- ---------- ---------- Dad ---------- ---------- ---------- ---------- ---------- Af081111 .......... .......... g..a...... .......... .......... Af081109 .......... ....a..... g..a...... .......... ..-------- L1spa .......... .......... g..a...... .......... .......... Tfnode1 .......... .......... g..a...... .......... .......... [ ' 7350 ' ] L1mdA2 ATGTAAATGA GTTAAATACC TAATAAAAAA TGG Dat ---------- ---------- ---------- --- Af081112 .......... .c........ ........-- --- Af081107 .......... .c........ ........-- --- Ac5938b .......... .c........ .......... ... Tfnode2 .......... .c........ .......... ... Ac4405lr .......... .c........ .......... ... Af081113 .......... .c........ ........-- --- Af081106 .......... .c........ ........-- --- D2 ---------- ---------- ---------- --- D3 ---------- ---------- ---------- --- L1md4 .......... .c........ .......... ... Dab ---------- ---------- ---------- --- Dar ---------- ---------- ---------- --- Daq ---------- ---------- ---------- --- Dap ---------- ---------- ---------- --- Daa ---------- ---------- ---------- --- Dae ---------- ---------- ---------- --- Dan ---------- ---------- ---------- --- L1orl .......... .c........ .......... ... Musmht ---------- ---------- ---------- --- Dad ---------- ---------- ---------- --- Af081111 .......... .c........ ........-- --- Af081109 ---------- ---------- ---------- --- L1spa .......... .c........ .......... ... Tfnode1 .......... .c........ .......... ... ; End;