Tail structure region of VpV262.
Focused searches identified additional homologues
between VpV262 and SIO1. It was not possible to specifically establish
homology to particular T7 proteins. However, the pattern of matching
in itself reveals the likely identity of the major tail proteins.
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T7-like viruses have a very large internal virion protein
that extends upon infection to become a longer tail. It is usually
poorly conserved except for recognition domains for the bacteria at the
C terminus. VpV262 orfU by size alone is probably a distant homologue
of this protein.
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T7 (and all phages) have tail fibers that extend and have
recognition domains for the bacteria at their C termini. These proteins
are notoriously mosaic in their structure, with the C termini often exchanged
even between closely related viruses. This presumably reflects the
coadaptive struggle with the host. VpV262 orf N fits this pattern.
See fig below.